TRDN-AS1 (TRDN antisense RNA 1) - Rat Genome Database

Name: TRDN-AS1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TRDN-AS1 (TRDN antisense RNA 1) Homo sapiens

Analyze

Symbol:

TRDN-AS1

Name:

TRDN antisense RNA 1

RGD ID:

13210606

HGNC Page

HGNC:40592

Description:

ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia; catecholaminergic polymorphic ventricular tachycardia 1; catecholaminergic polymorphic ventricular tachycardia 5

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

HRAT13

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	123,439,604 - 123,471,756 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	123,389,421 - 123,511,509 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	123,760,749 - 123,792,901 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	6	q22.31	NCBI
HuRef	6	121,338,264 - 121,369,890 (+)	NCBI		HuRef
CHM1_1	6	124,024,316 - 124,056,478 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	124,627,391 - 124,659,527 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

catecholaminergic polymorphic ventricular tachycardia (IAGP)

catecholaminergic polymorphic ventricular tachycardia 1 (IAGP)

catecholaminergic polymorphic ventricular tachycardia 5 (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

Effort-induced polymorphic ventricular tachycardia (IAGP)

References

Additional References at PubMed

PMID:28839111

Genomics

Variants

Variants in TRDN-AS1
35 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 6q22.31(chr6:123206400-123959297)x3	copy number gain	See cases [RCV000053387]	Chr6:123206400..123959297 [GRCh38] Chr6:123527545..124280442 [GRCh37] Chr6:123569244..124322141 [NCBI36] Chr6:6q22.31	uncertain significance
GRCh38/hg38 6q22.31(chr6:123352392-123845516)x3	copy number gain	See cases [RCV000136997]	Chr6:123352392..123845516 [GRCh38] Chr6:123673537..124166661 [GRCh37] Chr6:123715236..124208360 [NCBI36] Chr6:6q22.31	uncertain significance
GRCh38/hg38 6q22.31(chr6:123206400-123981401)x3	copy number gain	See cases [RCV000137762]	Chr6:123206400..123981401 [GRCh38] Chr6:123527545..124302546 [GRCh37] Chr6:123569244..124344245 [NCBI36] Chr6:6q22.31	likely benign
GRCh38/hg38 6q22.31(chr6:123206369-123959291)x3	copy number gain	See cases [RCV000139579]	Chr6:123206369..123959291 [GRCh38] Chr6:123527514..124280436 [GRCh37] Chr6:123569213..124322135 [NCBI36] Chr6:6q22.31	likely benign
GRCh38/hg38 6q22.31(chr6:123188343-124008918)x3	copy number gain	See cases [RCV000143453]	Chr6:123188343..124008918 [GRCh38] Chr6:123509488..124330063 [GRCh37] Chr6:123551187..124371762 [NCBI36] Chr6:6q22.31	uncertain significance
GRCh38/hg38 6q22.31(chr6:123197871-124008917)x3	copy number gain	See cases [RCV000143491]	Chr6:123197871..124008917 [GRCh38] Chr6:123519016..124330062 [GRCh37] Chr6:123560715..124371761 [NCBI36] Chr6:6q22.31	uncertain significance
GRCh38/hg38 6q22.31(chr6:123206400-123959297)x3	copy number gain	See cases [RCV000148083]	Chr6:123206400..123959297 [GRCh38] Chr6:123527545..124280442 [GRCh37] Chr6:123569244..124322141 [NCBI36] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.931+18del	deletion	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002519593]\|Catecholaminergic polymorphic ventricular tachycardia 5 [RCV003741162]\|not provided [RCV001563524]\|not specified [RCV000221715]	Chr6:123464888 [GRCh38] Chr6:123786033 [GRCh37] Chr6:6q22.31	benign\|likely benign
NM_006073.4(TRDN):c.911C>T (p.Pro304Leu)	single nucleotide variant	Cardiovascular phenotype [RCV000245220]\|Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002518718]	Chr6:123464926 [GRCh38] Chr6:123786071 [GRCh37] Chr6:6q22.31	likely benign\|uncertain significance
NM_006073.4(TRDN):c.854-134del	deletion	not provided [RCV000834120]	Chr6:123465117 [GRCh38] Chr6:123786262 [GRCh37] Chr6:6q22.31	benign
NC_000006.11:g.(?_123539726)_(123957940_?)dup	duplication	Catecholaminergic polymorphic ventricular tachycardia [RCV000639198]	Chr6:123218581..123636795 [GRCh38] Chr6:123539726..123957940 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.884C>T (p.Pro295Leu)	single nucleotide variant	Cardiovascular phenotype [RCV000619195]\|Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002526669]\|Catecholaminergic polymorphic ventricular tachycardia 5 [RCV003224297]\|not provided [RCV000486067]	Chr6:123464953 [GRCh38] Chr6:123786098 [GRCh37] Chr6:6q22.31	uncertain significance
GRCh38/hg38 6q21-23.2(chr6:108944899-132067720)x1	copy number loss	See cases [RCV000051196]	Chr6:108944899..132067720 [GRCh38] Chr6:109266102..132388860 [GRCh37] Chr6:109372795..132430553 [NCBI36] Chr6:6q21-23.2	pathogenic
GRCh38/hg38 6q22.1-22.33(chr6:115601230-128514324)x1	copy number loss	See cases [RCV000052196]	Chr6:115601230..128514324 [GRCh38] Chr6:115922394..128835469 [GRCh37] Chr6:116029087..128877162 [NCBI36] Chr6:6q22.1-22.33	pathogenic
GRCh38/hg38 6q22.31(chr6:118975015-125713307)x1	copy number loss	See cases [RCV000052197]	Chr6:118975015..125713307 [GRCh38] Chr6:119296180..126034453 [GRCh37] Chr6:119337879..126076146 [NCBI36] Chr6:6q22.31	pathogenic
GRCh38/hg38 6q22.31-22.32(chr6:121829616-126154472)x1	copy number loss	See cases [RCV000137174]	Chr6:121829616..126154472 [GRCh38] Chr6:122150762..126475618 [GRCh37] Chr6:122192461..126517311 [NCBI36] Chr6:6q22.31-22.32	uncertain significance
GRCh38/hg38 6q22.1-22.32(chr6:117607147-126699980)x3	copy number gain	See cases [RCV000137726]	Chr6:117607147..126699980 [GRCh38] Chr6:117928310..127021125 [GRCh37] Chr6:118035003..127062818 [NCBI36] Chr6:6q22.1-22.32	pathogenic
GRCh38/hg38 6q13-24.1(chr6:74382807-142040500)x3	copy number gain	See cases [RCV000139729]	Chr6:74382807..142040500 [GRCh38] Chr6:75092523..142361637 [GRCh37] Chr6:75149243..142403330 [NCBI36] Chr6:6q13-24.1	pathogenic
GRCh38/hg38 6q21-22.31(chr6:106503719-125781219)x1	copy number loss	See cases [RCV000141587]	Chr6:106503719..125781219 [GRCh38] Chr6:106951594..126102365 [GRCh37] Chr6:107058287..126144058 [NCBI36] Chr6:6q21-22.31	pathogenic
NM_006073.4(TRDN):c.861C>T (p.Ser287=)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia [RCV001410332]\|not provided [RCV000839234]	Chr6:123464976 [GRCh38] Chr6:123786121 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854G>A (p.Gly285Glu)	single nucleotide variant	Cardiovascular phenotype [RCV003296970]	Chr6:123464983 [GRCh38] Chr6:123786128 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.902G>A (p.Arg301Lys)	single nucleotide variant	Cardiovascular phenotype [RCV000617976]\|Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002531783]	Chr6:123464935 [GRCh38] Chr6:123786080 [GRCh37] Chr6:6q22.31	uncertain significance
NC_000006.11:g.(?_123539726)_(123825066_?)dup	duplication	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003103821]	Chr6:123218581..123503921 [GRCh38] Chr6:123539726..123825066 [GRCh37] Chr6:6q22.31	uncertain significance
Single allele	deletion	Interstitial 6q microdeletion syndrome [RCV002280353]	Chr6:115941808..133892653 [GRCh38] Chr6:6q22.1-23.2	pathogenic
NM_006073.4(TRDN):c.872C>T (p.Pro291Leu)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002553089]	Chr6:123464965 [GRCh38] Chr6:123786110 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.854-84A>G	single nucleotide variant	not provided [RCV000835796]	Chr6:123465067 [GRCh38] Chr6:123786212 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854-237A>G	single nucleotide variant	not provided [RCV000838226]	Chr6:123465220 [GRCh38] Chr6:123786365 [GRCh37] Chr6:6q22.31	benign
NM_006073.4(TRDN):c.854-325C>T	single nucleotide variant	not provided [RCV000840616]	Chr6:123465308 [GRCh38] Chr6:123786453 [GRCh37] Chr6:6q22.31	benign
NC_000006.12:g.(?_123438043)_(123465003_?)del	deletion	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003103844]	Chr6:123438043..123465003 [GRCh38] Chr6:123759188..123786148 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.863C>T (p.Pro288Leu)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002536005]	Chr6:123464974 [GRCh38] Chr6:123786119 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.931+6T>C	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002562383]	Chr6:123464900 [GRCh38] Chr6:123786045 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.854-188T>C	single nucleotide variant	not provided [RCV001540807]	Chr6:123465171 [GRCh38] Chr6:123786316 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.923C>T (p.Ala308Val)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002547373]	Chr6:123464914 [GRCh38] Chr6:123786059 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.885G>A (p.Pro295=)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002559314]	Chr6:123464952 [GRCh38] Chr6:123786097 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.894A>G (p.Gln298=)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002555571]	Chr6:123464943 [GRCh38] Chr6:123786088 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.899C>G (p.Ser300Cys)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002555786]	Chr6:123464938 [GRCh38] Chr6:123786083 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.931+14T>C	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003053445]	Chr6:123464892 [GRCh38] Chr6:123786037 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854-17A>G	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002561653]	Chr6:123465000 [GRCh38] Chr6:123786145 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.931+10T>A	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002494140]\|Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003006989]	Chr6:123464896 [GRCh38] Chr6:123786041 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.931+18dup	duplication	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003007142]	Chr6:123464887..123464888 [GRCh38] Chr6:123786032..123786033 [GRCh37] Chr6:6q22.31	benign
NM_006073.4(TRDN):c.931+19C>T	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002561615]	Chr6:123464887 [GRCh38] Chr6:123786032 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854-7T>C	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002993458]\|TRDN-related condition [RCV003950974]	Chr6:123464990 [GRCh38] Chr6:123786135 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.931+9T>C	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003033293]	Chr6:123464897 [GRCh38] Chr6:123786042 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854-2A>T	single nucleotide variant	Cardiovascular phenotype [RCV002447821]	Chr6:123464985 [GRCh38] Chr6:123786130 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.874C>T (p.Pro292Ser)	single nucleotide variant	Cardiovascular phenotype [RCV002373543]\|Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003100016]	Chr6:123464963 [GRCh38] Chr6:123786108 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.881T>A (p.Leu294Ter)	single nucleotide variant	Cardiovascular phenotype [RCV002373754]	Chr6:123464956 [GRCh38] Chr6:123786101 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.877C>T (p.Pro293Ser)	single nucleotide variant	Cardiovascular phenotype [RCV002373649]	Chr6:123464960 [GRCh38] Chr6:123786105 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.865G>A (p.Ala289Thr)	single nucleotide variant	Cardiovascular phenotype [RCV003308257]\|Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002731343]	Chr6:123464972 [GRCh38] Chr6:123786117 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.856_890del (p.Gln286fs)	deletion	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003035570]	Chr6:123464947..123464981 [GRCh38] Chr6:123786092..123786126 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.925C>T (p.Leu309Phe)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003007412]	Chr6:123464912 [GRCh38] Chr6:123786057 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.920C>T (p.Pro307Leu)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002663788]	Chr6:123464917 [GRCh38] Chr6:123786062 [GRCh37] Chr6:6q22.31	uncertain significance
NM_006073.4(TRDN):c.876T>A (p.Pro292=)	single nucleotide variant	Cardiovascular phenotype [RCV003167852]\|Catecholaminergic polymorphic ventricular tachycardia 1 [RCV002898597]	Chr6:123464961 [GRCh38] Chr6:123786106 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.912G>A (p.Pro304=)	single nucleotide variant	Cardiovascular phenotype [RCV003176724]	Chr6:123464925 [GRCh38] Chr6:123786070 [GRCh37] Chr6:6q22.31	likely benign
GRCh38/hg38 6q21-23.1(chr6:113857248-130442177)x1	copy number loss	Intellectual disability, autosomal dominant 55, with seizures [RCV003327704]	Chr6:113857248..130442177 [GRCh38] Chr6:6q21-23.1	pathogenic
NM_006073.4(TRDN):c.901A>C (p.Arg301=)	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003527245]	Chr6:123464936 [GRCh38] Chr6:123786081 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854-13C>G	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003839876]	Chr6:123464996 [GRCh38] Chr6:123786141 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854-4G>A	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003638551]	Chr6:123464987 [GRCh38] Chr6:123786132 [GRCh37] Chr6:6q22.31	likely benign
NM_006073.4(TRDN):c.854-10C>A	single nucleotide variant	Catecholaminergic polymorphic ventricular tachycardia 1 [RCV003639062]	Chr6:123464993 [GRCh38] Chr6:123786138 [GRCh37] Chr6:6q22.31	likely benign

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	522
Count of miRNA genes:	347
Interacting mature miRNAs:	365
Transcripts:	ENST00000418467, ENST00000427828, ENST00000434768, ENST00000587049, ENST00000587106, ENST00000589182
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

317

273

Low

556

161

Below cutoff

1460

772

496

135

445

2422

1333

1109

624

499

329

1747

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_030438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_110844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL445259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL832096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000418467

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,562 - 123,471,759 (+)	Ensembl

RefSeq Acc Id:

ENST00000427828

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,640 - 123,469,850 (+)	Ensembl

RefSeq Acc Id:

ENST00000434768

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,584 - 123,471,756 (+)	Ensembl

RefSeq Acc Id:

ENST00000587049

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,597 - 123,463,766 (+)	Ensembl

RefSeq Acc Id:

ENST00000587106

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,389,421 - 123,471,759 (+)	Ensembl

RefSeq Acc Id:

ENST00000589182

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,678 - 123,469,950 (+)	Ensembl

RefSeq Acc Id:

ENST00000610906

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,678 - 123,442,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000615864

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,685 - 123,441,112 (+)	Ensembl

RefSeq Acc Id:

ENST00000618357

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,678 - 123,445,150 (+)	Ensembl

RefSeq Acc Id:

ENST00000619147

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,678 - 123,445,161 (+)	Ensembl

RefSeq Acc Id:

ENST00000625262

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,597 - 123,510,247 (+)	Ensembl

RefSeq Acc Id:

ENST00000625415

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,709 - 123,488,921 (+)	Ensembl

RefSeq Acc Id:

ENST00000628939

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,706 - 123,509,742 (+)	Ensembl

RefSeq Acc Id:

ENST00000629087

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,597 - 123,470,143 (+)	Ensembl

RefSeq Acc Id:

ENST00000655724

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,738 - 123,490,956 (+)	Ensembl

RefSeq Acc Id:

ENST00000656482

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,610 - 123,510,242 (+)	Ensembl

RefSeq Acc Id:

ENST00000668867

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,572 - 123,511,509 (+)	Ensembl

RefSeq Acc Id:

ENST00000669371

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,527 - 123,471,654 (+)	Ensembl

RefSeq Acc Id:

ENST00000670687

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,714 - 123,491,757 (+)	Ensembl

RefSeq Acc Id:

ENST00000686678

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	6	123,439,597 - 123,491,935 (+)	Ensembl

RefSeq Acc Id:

NR_110844

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	123,439,604 - 123,471,756 (+)	NCBI
CHM1_1	6	124,024,341 - 124,056,478 (+)	NCBI
T2T-CHM13v2.0	6	124,627,391 - 124,659,527 (+)	NCBI

Sequence:

show sequence

GGTTGCAGTAAGTCTGGATGCCACATCAAACTGTTTGTGGTACTTCTAAACTTCGTGGAAGAGC
CCTGTTTCATAAATCTGAGACAGCCTTGGTCTGAGGGAGCAAAGACAGAGAATTCACGTGCTGC
CCAGGCATAGCCACATAGCAGGTGGACATCCCTGGACACTTTTCTGACCCTCATTGGATTTTCC
TGGAAGTACGGAGAGTTACATCCAGAGAACTCTGAACATTTTGGAAGGACCCCAATCCTGCAAA
CAATGAATGGCAATAAATCCTGGGACTGGAAAGGGGCTTCTCAACCCCAAGGCAACCATAAAGT
CCTATACAAAGAAAGATACAGCAGTGTGAAAGAGGCCTGGATGAAAAAACAAAGACAGAGCCAG
TGAGCCAGAGCCAGAGCCAGAGGACAAGAGAGAAAGGCAGAGAATGGAAAACACAGACAGAGAA
GGCAGATGCGTAGAGAGACAGAGATTCAATGAGAAAATAAGGAAGGAAGAAAGAAAGAAAACAA
AAACGTTCTCAGCACTACAACTTCTGCCTTGTTCTGTTCCAGAACAGTATGAGCTCAGTACTTT
TTCAGACTCTCAATTTTCTACAACTAATAATTTGCTCTTTCAGTTAGTGGCAAAGGCTTAACGA
CAAAGGTTCATCTTTAATATTAGAGAGGCACTTTTAAAATTTATGATGCTAAGCCTTTTGTTCT
GGATATGGTATGTTGCACAGGTCTAGGGACTGGGATTTCAGATGTCTATTCCGTACCCTTATTC
TTTTATTTATTAAATCTTTTAGTGTGTATTTTTTTCTATTTTCTCTTCTTTTATTAGTATGTAT
TTCTTGAGTCATTAACATACAACATATATAGGACTTCCTCTGAGGATACAATAATGTATATGAT
GGACAAGATACGTAAAAGTGCCTTGAAGAGACTTGGTCTTGTGAGGGGACAGACAGGAAACAGG
CAATTATCACCTAACTTAGGTCTGTTGTTTCAAGGTAAAATAAGAATAATAACATCTGTGTTGG
CTGGGATGTTGTGAGTGTTTGTGGAGATAATAGTACAAATGAAATTACTGAGGGACAATGGTGA
AGATAGGGCCATATCATGGAGCTTACACTAGTGATGGAAGGAGATGGGAGATACAAAAGCAAGT
CAATATTTCAGATTTCGTAAATGAATGGCAAGCATAGAGCAGTGAGGCAGAGAATGACTGGAGA
AAGAGACTATGTTAAACTGGATAGTAAAGGAAGAGCAGGACCCCACTAAACTATATGGAGTTTT
GTGCAAATCACATGAACACACGTAGAACATTTTAGGCTGCTCATGTGACTTTGGATTTGTCCTA
AGGGCAATAGTAAGCCTTTGAACTGCTTTAGCATGATAGGATTTTAAAAGATCACTGGCTGCTG
TGTGAACAAAAATAATGTTGTAAAGAAAAGGATATTAGCTGTATCAGATCAGCTGGAGACTACT
GAAATAACCCAAGCTGGCTTGGACTACATAGGAGTAGTGTAAACTCATTCATTCATGCAAGAAA
TACTTACTGAGTGCCTACTCAGTACCAGACCCTTTTCTAGGACATGGAGTTATAGCAGTGAACA
ATATAGAAAAAAATCCCCGAATTCATGGAGACTCCAGTGAGCAGAGACAAAAAAATAGCAACTA
AATAAGTTAAAAGGAATTGAGTACCCTATAAAAGTTTATCAGGGAAATGTTATAAGGAATGACT
TTCGGAGTAATGGGTAGTGATCTTAAATGTATGGTCAATGAAAATCAGAAGTTGTAGAGAAGTG
GATAAATTCACAGTACGTTTTAAAGTAGACCTAATAAGACTTAATGAATTTGATGTGGCAAGTG
AGAAAAATACATCAAGGATGATGACTTTTATAATTTGACTTGAGTATCTGGGAACAAACAAGTA
CAGTGCCATAATAAGGGCAGAAAATTTTCCATTCACTCAGCAACTTATGAACTCATTTGCTTAG
TCTTTATTGCCTCTTGCATTATGTAGTTTTCACTTTGCTGGAGTACTTGTATAGAAGATCACCA
GTGAAGAAGCCAGAGATGGTTTATTTGGTCATCCCAATAATACATCTTATTGTTAATTAACTCT
CAAGGGTTTTTTTTCACAATTTTAGAAAAGGTTTAAGCAAATGAATTATTTAACATGAATTGGC
TATGTGACCCTACTATAAGGTGTTTAAAACACCAACAGCTTAAACTTCTTAGATCAAAGGACAT
CCTCCAGGCCAAAATGTTTCCACTGGAACGGTTTCTTTGCTTCCTGATTAAAAGCTTCCCTAAT
ATATTTCCACGTGTTATTACATATTTTCGTATTCACTTTGATGGAAAGCAAGAATAGCAGCCAA
ATACATATTTCATGCATTCTTTTGATTAAAAATGATAAAGG

hide sequence

Promoters

RGD ID:

15096069

Promoter ID:

EPDNEWNC_H900

Type:

initiation region

Name:

TRDN-AS1_1

Description:

TRDN antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40592]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	6	123,439,678 - 123,439,738	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	TRDN-AS1	COSMIC
Ensembl Genes	ENSG00000235535	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000669371	ENTREZGENE
GTEx	ENSG00000235535	GTEx
HGNC ID	HGNC:40592	ENTREZGENE
Human Proteome Map	TRDN-AS1	Human Proteome Map
NCBI Gene	TRDN-AS1	ENTREZGENE
RNAcentral	URS000075B0AE	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar

Send us a Message

Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar