Ap4m1 (adaptor-related protein complex AP-4, mu 1) - Rat Genome Database

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Gene: Ap4m1 (adaptor-related protein complex AP-4, mu 1) Mus musculus
Analyze
Symbol: Ap4m1
Name: adaptor-related protein complex AP-4, mu 1
RGD ID: 1321016
MGI Page MGI
Description: Predicted to enable protein domain specific binding activity. Involved in protein targeting. Predicted to be located in early endosome. Predicted to be part of AP-4 adaptor complex. Predicted to be active in cytoplasmic vesicle and trans-Golgi network. Is expressed in brain. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 50. Orthologous to human AP4M1 (adaptor related protein complex 4 subunit mu 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930443L05Rik; adapter-related protein complex 4 mu-1 subunit; adapter-related protein complex 4 subunit mu-1; adaptor-related protein complex 4 subunit mu-1; adaptor-related protein complex AP-4 mu4 subunit; AP-4 adapter complex mu subunit; AP-4 adaptor complex mu subunit; AP-4 complex subunit mu-1; Ap4m4; mu subunit of AP-4; mu-adaptin-related protein 2; mu-ARP2; mu4; mu4-adaptin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,170,283 - 138,178,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,170,264 - 138,178,691 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385138,172,021 - 138,180,429 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,172,002 - 138,180,429 (+)Ensemblmm10GRCm38
MGSCv375138,613,249 - 138,619,915 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365138,401,809 - 138,408,471 (+)NCBIMGSCv36mm8
Celera5135,151,353 - 135,157,995 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.98NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
AP-4 adaptor complex  (IEA,ISO,ISS,NAS)
clathrin adaptor complex  (IEA)
cytoplasmic vesicle  (IBA)
cytosol  (IEA)
early endosome  (IEA,ISS)
endosome  (IEA)
Golgi apparatus  (IEA)
membrane  (IEA)
trans-Golgi network  (IBA,IEA,ISO,ISS,NAS,TAS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9714600   PMID:10066790   PMID:10349636   PMID:10436028   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18341993  
PMID:18799693   PMID:19559397   PMID:21677750   PMID:21873635   PMID:21909369   PMID:27568566   PMID:27626380   PMID:30973865   PMID:32968282   PMID:36951961   PMID:38355793  


Genomics

Comparative Map Data
Ap4m1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,170,283 - 138,178,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,170,264 - 138,178,691 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385138,172,021 - 138,180,429 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,172,002 - 138,180,429 (+)Ensemblmm10GRCm38
MGSCv375138,613,249 - 138,619,915 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365138,401,809 - 138,408,471 (+)NCBIMGSCv36mm8
Celera5135,151,353 - 135,157,995 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.98NCBI
AP4M1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,100,794 - 100,109,039 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,100,858 - 100,110,345 (+)Ensemblhg38GRCh38
GRCh37799,699,266 - 99,706,662 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,537,066 - 99,542,739 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34799,343,830 - 99,349,453NCBI
Celera794,433,789 - 94,439,462 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,334,781 - 94,340,455 (+)NCBIHuRef
CHM1_1799,629,287 - 99,634,960 (+)NCBICHM1_1
T2T-CHM13v2.07101,340,729 - 101,348,885 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,059,249 - 99,064,921 (+)NCBI
Ap4m1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,163,474 - 22,171,734 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1222,163,466 - 22,171,731 (+)EnsemblGRCr8
mRatBN7.21217,049,766 - 17,055,954 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,049,777 - 17,058,026 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1217,873,224 - 17,879,102 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,496,968 - 18,502,846 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,550,374 - 17,556,252 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,314,222 - 19,320,339 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,314,251 - 19,320,142 (+)Ensemblrn6Rnor6.0
Rnor_5.01221,371,852 - 21,377,968 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41217,614,882 - 17,620,773 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1218,980,013 - 18,985,904 (+)NCBICelera
RGSC_v3.11217,604,001 - 17,610,295 (+)NCBI
Cytogenetic Map12q11NCBI
Ap4m1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573759,222 - 763,222 (-)Ensembl
ChiLan1.0NW_004955573759,222 - 763,222 (-)NCBIChiLan1.0ChiLan1.0
AP4M1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,020,512 - 118,028,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,285,144 - 166,293,064 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,137,085 - 92,142,756 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,570,205 - 105,575,971 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,570,205 - 105,575,971 (+)EnsemblpanPan2panpan1.1
AP4M1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,488,496 - 9,492,703 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,486,372 - 9,492,243 (-)EnsemblcanFam3CanFam3.1
ROS_Cfam_1.069,425,495 - 9,429,591 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,423,773 - 9,429,399 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,274,807 - 9,278,909 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,255,130 - 9,259,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,434,718 - 9,438,823 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ap4m1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,784,566 - 133,790,213 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543246,335 - 254,975 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936543246,335 - 250,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP4M1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,013,747 - 8,017,700 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.138,013,701 - 8,017,701 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AP4M1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,971,007 - 12,976,914 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,971,297 - 12,976,779 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660703,296,018 - 3,301,894 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap4m1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,883,828 - 16,887,685 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474016,883,725 - 16,887,678 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Ap4m1
515 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1387
Count of miRNA genes:594
Interacting mature miRNAs:759
Transcripts:ENSMUST00000019662, ENSMUST00000134100, ENSMUST00000142687, ENSMUST00000143241, ENSMUST00000151318, ENSMUST00000155745, ENSMUST00000157031
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse

Markers in Region
AW549759  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385138,178,682 - 138,178,780UniSTSGRCm38
MGSCv375138,619,910 - 138,620,008UniSTSGRCm37
Celera5135,157,990 - 135,158,088UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5G1UniSTS
Whitehead/MRC_RH51670.77UniSTS
D49439  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385138,178,682 - 138,178,761UniSTSGRCm38
MGSCv375138,619,910 - 138,619,989UniSTSGRCm37
Celera5135,157,990 - 135,158,069UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5G1UniSTS
Whitehead/MRC_RH51670.77UniSTS
RH137179  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385138,178,728 - 138,178,907UniSTSGRCm38
MGSCv375138,619,956 - 138,620,135UniSTSGRCm37
Celera5135,158,036 - 135,158,215UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map5G2UniSTS
Ap4m1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G1UniSTS
cM Map5 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF242858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY912481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE627979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ159660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000019662   ⟹   ENSMUSP00000019662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,170,264 - 138,178,691 (+)Ensembl
GRCm38.p6 Ensembl5138,172,002 - 138,180,429 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,174,831 - 138,176,949 (+)Ensembl
GRCm38.p6 Ensembl5138,176,569 - 138,178,687 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,173,048 - 138,175,462 (+)Ensembl
GRCm38.p6 Ensembl5138,174,786 - 138,177,200 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143241   ⟹   ENSMUSP00000123770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,170,330 - 138,176,943 (+)Ensembl
GRCm38.p6 Ensembl5138,172,068 - 138,178,681 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151318   ⟹   ENSMUSP00000121338
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,170,267 - 138,173,275 (+)Ensembl
GRCm38.p6 Ensembl5138,172,005 - 138,175,013 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,170,844 - 138,173,122 (+)Ensembl
GRCm38.p6 Ensembl5138,172,582 - 138,174,860 (+)Ensembl
Ensembl Acc Id: ENSMUST00000157031
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,170,309 - 138,172,634 (+)Ensembl
GRCm38.p6 Ensembl5138,172,047 - 138,174,372 (+)Ensembl
RefSeq Acc Id: NM_021392   ⟹   NP_067367
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,170,283 - 138,176,949 (+)NCBI
GRCm385138,172,021 - 138,178,687 (+)NCBI
MGSCv375138,613,249 - 138,619,915 (+)RGD
Celera5135,151,353 - 135,157,995 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504551   ⟹   XP_006504614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,170,387 - 138,178,691 (+)NCBI
GRCm385138,172,162 - 138,180,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254076   ⟹   XP_030109936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,170,695 - 138,178,691 (+)NCBI
GRCm385138,172,433 - 138,180,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254077   ⟹   XP_030109937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,170,425 - 138,178,691 (+)NCBI
GRCm385138,172,163 - 138,180,429 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_067367 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504614 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109936 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109937 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF63513 (Get FASTA)   NCBI Sequence Viewer  
  AAH11174 (Get FASTA)   NCBI Sequence Viewer  
  AAW83718 (Get FASTA)   NCBI Sequence Viewer  
  AAW83719 (Get FASTA)   NCBI Sequence Viewer  
  AAW83720 (Get FASTA)   NCBI Sequence Viewer  
  AAW83721 (Get FASTA)   NCBI Sequence Viewer  
  AAW83722 (Get FASTA)   NCBI Sequence Viewer  
  AAW83723 (Get FASTA)   NCBI Sequence Viewer  
  AAW83724 (Get FASTA)   NCBI Sequence Viewer  
  AAW83725 (Get FASTA)   NCBI Sequence Viewer  
  AAW83726 (Get FASTA)   NCBI Sequence Viewer  
  AAW83727 (Get FASTA)   NCBI Sequence Viewer  
  AAW83728 (Get FASTA)   NCBI Sequence Viewer  
  AAW83729 (Get FASTA)   NCBI Sequence Viewer  
  AAW83730 (Get FASTA)   NCBI Sequence Viewer  
  AAW83731 (Get FASTA)   NCBI Sequence Viewer  
  AAW83732 (Get FASTA)   NCBI Sequence Viewer  
  AAW83733 (Get FASTA)   NCBI Sequence Viewer  
  AAW83734 (Get FASTA)   NCBI Sequence Viewer  
  AAW83735 (Get FASTA)   NCBI Sequence Viewer  
  AAW83736 (Get FASTA)   NCBI Sequence Viewer  
  AAW83737 (Get FASTA)   NCBI Sequence Viewer  
  AAW83738 (Get FASTA)   NCBI Sequence Viewer  
  AAW83739 (Get FASTA)   NCBI Sequence Viewer  
  AAW83740 (Get FASTA)   NCBI Sequence Viewer  
  BAC27490 (Get FASTA)   NCBI Sequence Viewer  
  EDL19210 (Get FASTA)   NCBI Sequence Viewer  
  EDL19211 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000019662
  ENSMUSP00000019662.5
GenBank Protein Q9JKC7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_067367   ⟸   NM_021392
- UniProtKB: Q9JKC7 (UniProtKB/Swiss-Prot),   Q8CD17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504614   ⟸   XM_006504551
- Peptide Label: isoform X1
- UniProtKB: Q8CD17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109937   ⟸   XM_030254077
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109936   ⟸   XM_030254076
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000123770   ⟸   ENSMUST00000143241
Ensembl Acc Id: ENSMUSP00000121338   ⟸   ENSMUST00000151318
Ensembl Acc Id: ENSMUSP00000019662   ⟸   ENSMUST00000019662
Protein Domains
AP complex mu/sigma subunit   MHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JKC7-F1-model_v2 AlphaFold Q9JKC7 1-449 view protein structure

Promoters
RGD ID:6888500
Promoter ID:EPDNEW_M7701
Type:multiple initiation site
Name:Ap4m1_1
Description:Mus musculus adaptor-related protein complex AP-4, mu 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385138,172,119 - 138,172,179EPDNEW
RGD ID:6837095
Promoter ID:MM_KWN:44540
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   Kidney,   MEF_B4,   Spleen
Transcripts:OTTMUST00000054326,   OTTMUST00000054392,   OTTMUST00000054393,   OTTMUST00000054394,   OTTMUST00000054395
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365138,613,231 - 138,614,057 (+)MPROMDB
RGD ID:6837096
Promoter ID:MM_KWN:44541
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4
Transcripts:OTTMUST00000054396
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365138,615,646 - 138,616,146 (+)MPROMDB
RGD ID:6837098
Promoter ID:MM_KWN:44542
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain
Transcripts:OTTMUST00000054397
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365138,616,836 - 138,618,142 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1337063 AgrOrtholog
Ensembl Genes ENSMUSG00000019518 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000019662 ENTREZGENE
  ENSMUST00000019662.11 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.450.60 UniProtKB/Swiss-Prot
  Mu homology domain, subdomain B UniProtKB/Swiss-Prot
InterPro Adaptor_comp_med_subunit UniProtKB/Swiss-Prot
  AP2_Mu_C_sf UniProtKB/Swiss-Prot
  Clathrin_mu UniProtKB/Swiss-Prot
  Clathrin_mu_CS UniProtKB/Swiss-Prot
  Longin-like_dom_sf UniProtKB/Swiss-Prot
  MHD UniProtKB/Swiss-Prot
KEGG Report mmu:11781 UniProtKB/Swiss-Prot
MGD MGI:1337063 ENTREZGENE
NCBI Gene 11781 ENTREZGENE
PANTHER AP COMPLEX SUBUNIT MU UniProtKB/Swiss-Prot
Pfam Adap_comp_sub UniProtKB/Swiss-Prot
PhenoGen Ap4m1 PhenoGen
PIRSF Clathrin_mu UniProtKB/Swiss-Prot
PRINTS CLATHRINADPT UniProtKB/Swiss-Prot
PROSITE CLAT_ADAPTOR_M_2 UniProtKB/Swiss-Prot
  MHD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49447 UniProtKB/Swiss-Prot
  SSF64356 UniProtKB/Swiss-Prot
UniProt AP4M1_MOUSE UniProtKB/Swiss-Prot
  E9Q416_MOUSE UniProtKB/TrEMBL
  E9Q9U6_MOUSE UniProtKB/TrEMBL
  Q2TFM4_MOUSE UniProtKB/TrEMBL
  Q2TFM7_MOUSE UniProtKB/TrEMBL
  Q2TFM8_MOUSE UniProtKB/TrEMBL
  Q2TFM9_MOUSE UniProtKB/TrEMBL
  Q2TFN0_MOUSE UniProtKB/TrEMBL
  Q2TFN2_MOUSE UniProtKB/TrEMBL
  Q2TFN6_MOUSE UniProtKB/TrEMBL
  Q2TFN8_MOUSE UniProtKB/TrEMBL
  Q8CD17 ENTREZGENE, UniProtKB/TrEMBL
  Q9JKC7 ENTREZGENE