Xrn2 (5'-3' exoribonuclease 2) - Rat Genome Database

Name: Xrn2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Xrn2 (5'-3' exoribonuclease 2) Mus musculus

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Symbol:

Xrn2

Name:

5'-3' exoribonuclease 2

RGD ID:

1320992

MGI Page

MGI

Description:

Predicted to enable RNA exonuclease activity, producing 5'-phosphomonoesters; identical protein binding activity; and nucleic acid binding activity. Involved in RNA metabolic process and spermatogenesis. Predicted to be located in aggresome; nucleolus; and nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in adenoid cystic carcinoma and lung cancer. Orthologous to human XRN2 (5'-3' exoribonuclease 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

protein Dhm1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	XRN2 (5'-3' exoribonuclease 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Xrn2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Xrn2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	XRN2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	XRN2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Xrn2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	XRN2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	XRN2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Xrn2 (5'-3' exoribonuclease 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Xrn2 (5'-3' exoribonuclease 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	XRN2 (5'-3' exoribonuclease 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	xrn2 (5'-3' exoribonuclease 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	RAT1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rat1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	xrn-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	xrn2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	146,854,672 - 146,919,922 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	146,854,916 - 146,919,920 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	147,012,755 - 147,078,000 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	147,012,996 - 147,078,000 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	146,838,796 - 146,903,736 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	146,704,563 - 146,766,521 (+)	NCBI		MGSCv36	mm8
Celera	2	148,268,335 - 148,333,354 (+)	NCBI		Celera
Cytogenetic Map	2	G2	NCBI
cM Map	2	72.63	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoid cystic carcinoma (ISO)

familial hyperinsulinemic hypoglycemia 1 (ISO)

leiomyosarcoma (ISO)

lung cancer (ISO)

status epilepticus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (ISO)

2,6-dinitrotoluene (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

choline (EXP)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

decabromodiphenyl ether (ISO)

deguelin (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diuron (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (ISO)

folic acid (EXP)

FR900359 (ISO)

gentamycin (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (EXP)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (EXP)

phenobarbital (EXP)

pirinixic acid (EXP)

rotenone (ISO)

sodium arsenite (EXP,ISO)

succimer (EXP)

sunitinib (ISO)

tamoxifen (EXP)

tetrachloromethane (EXP)

tetraphene (EXP)

titanium dioxide (EXP)

trichloroethene (ISO)

triphenyl phosphate (ISO)

troglitazone (EXP)

valproic acid (EXP)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA recombination (NAS)

DNA repair (NAS)

hippocampus development (IEA,ISO)

microtubule-based process (TAS)

mRNA processing (IEA)

neuron differentiation (IEA,ISO)

nuclear-transcribed mRNA catabolic process (IBA)

retina development in camera-type eye (IEA,ISO)

RNA metabolic process (IGI)

spermatogenesis (IEP)

termination of RNA polymerase II transcription (ISO,ISS)

Cellular Component

aggresome (IEA,ISO)

nucleolus (ISO,ISS)

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

3'-5'-RNA exonuclease activity (ISO)

5'-3' exonuclease activity (ISO,ISS)

5'-3' RNA exonuclease activity (IBA,NAS)

identical protein binding (IEA,ISO)

metal ion binding (IEA)

protein binding (IPI)

RNA binding (IBA)

transcription termination site sequence-specific DNA binding (ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

3'-end pre-mRNA processing pathway (ISO)

ribosome biogenesis pathway (IEA,ISO)

RNA polymerase II transcription termination pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	CpG island methylation profiling in human salivary gland adenoid cystic carcinoma.	Bell A, etal., Cancer. 2011 Jul 1;117(13):2898-909. doi: 10.1002/cncr.25818. Epub 2011 Jan 11.
2.	Pre-mRNA 3'-end processing complex assembly and function.	Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
3.	Gene expression signatures of primary and metastatic uterine leiomyosarcoma.	Davidson B, etal., Hum Pathol. 2014 Apr;45(4):691-700. doi: 10.1016/j.humpath.2013.11.003. Epub 2013 Nov 13.
4.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5.	Pilocarpine-induced seizures trigger differential regulation of microRNA-stability related genes in rat hippocampal neurons.	Kinjo ER, etal., Sci Rep. 2016 Feb 12;6:20969. doi: 10.1038/srep20969.
6.	Genetic variants cis-regulating Xrn2 expression contribute to the risk of spontaneous lung tumor.	Lu Y, etal., Oncogene. 2010 Feb 18;29(7):1041-9. doi: 10.1038/onc.2009.396. Epub 2009 Nov 16.
7.	MGDs mouse GO annotations	MGD data from the GO Consortium
8.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA.	Sloan KE, etal., RNA. 2014 Apr;20(4):540-50. doi: 10.1261/rna.043471.113. Epub 2014 Feb 18.

Additional References at PubMed

PMID:7671812	PMID:7885830	PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12520002	PMID:12904583	PMID:14610273	PMID:15489334
PMID:16141072	PMID:16141073	PMID:16919269	PMID:17967808	PMID:18799693	PMID:20368287	PMID:21036871	PMID:21267068	PMID:21677750	PMID:21873635	PMID:22057269	PMID:22767893
PMID:24457600	PMID:26336360	PMID:27331609	PMID:28378742	PMID:29459677	PMID:30196744	PMID:32325033	PMID:32560809	PMID:36495875	PMID:37697435

Genomics

Comparative Map Data

Xrn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	146,854,672 - 146,919,922 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	146,854,916 - 146,919,920 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	147,012,755 - 147,078,000 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	147,012,996 - 147,078,000 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	146,838,796 - 146,903,736 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	146,704,563 - 146,766,521 (+)	NCBI		MGSCv36	mm8
Celera	2	148,268,335 - 148,333,354 (+)	NCBI		Celera
Cytogenetic Map	2	G2	NCBI
cM Map	2	72.63	NCBI

XRN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	21,303,331 - 21,389,825 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	21,303,331 - 21,389,825 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	21,283,969 - 21,370,463 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	21,231,942 - 21,318,463 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	21,231,941 - 21,318,463	NCBI
Celera	20	21,360,521 - 21,444,351 (+)	NCBI		Celera
Cytogenetic Map	20	p11.22	NCBI
HuRef	20	21,248,976 - 21,332,731 (+)	NCBI		HuRef
CHM1_1	20	21,284,715 - 21,370,457 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	21,362,698 - 21,446,483 (+)	NCBI		T2T-CHM13v2.0

Xrn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	154,888,558 - 154,962,519 (+)	NCBI		GRCr8
mRatBN7.2	3	134,436,916 - 134,509,308 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	134,437,109 - 134,509,306 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	138,350,638 - 138,422,835 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	146,934,742 - 147,006,929 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	144,637,900 - 144,710,092 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	141,224,858 - 141,298,272 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	141,225,290 - 141,298,265 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	147,641,256 - 147,716,287 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	135,651,059 - 135,724,442 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	135,541,370 - 135,629,673 (+)	NCBI
Celera	3	133,299,770 - 133,372,470 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

Xrn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	29,107,034 - 29,175,538 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	29,107,060 - 29,175,374 (+)	NCBI	ChiLan1.0	ChiLan1.0

XRN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	22,192,379 - 22,278,708 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	22,188,948 - 22,275,544 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	21,260,871 - 21,347,430 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	21,222,138 - 21,308,561 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	21,222,138 - 21,308,561 (+)	Ensembl	panpan1.1		panPan2

XRN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	2,042,521 - 2,128,942 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	2,042,888 - 2,128,867 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	2,070,749 - 2,157,181 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	2,449,943 - 2,536,442 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	2,449,949 - 2,536,432 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	2,046,962 - 2,133,487 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	2,150,331 - 2,236,452 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	2,427,267 - 2,513,473 (-)	NCBI		UU_Cfam_GSD_1.0

Xrn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	150,649,492 - 150,724,750 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	4,069,934 - 4,145,745 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	4,069,956 - 4,145,212 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

XRN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	29,107,667 - 29,193,479 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	29,107,641 - 29,193,500 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	33,060,057 - 33,145,974 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

XRN2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	50,287,718 - 50,373,869 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	50,288,073 - 50,373,883 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666078	5,086,667 - 5,173,118 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Xrn2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	21,691,199 - 21,767,790 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	21,691,099 - 21,768,267 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	314
Count of miRNA genes:	246
Interacting mature miRNAs:	280
Transcripts:	ENSMUST00000028921, ENSMUST00000136136, ENSMUST00000137358, ENSMUST00000147057
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301907	Rends_m	renal disease susceptibility (mouse)			Not determined		2	135699221	169699361	Mouse
11038696	Ltpr2f_m	Leishmania tropica response 2f (mouse)					2	115212857	149212994	Mouse
1301783	Bhr1_m	bronchial hyperresponsiveness 1 (mouse)			Not determined		2	142593476	178442452	Mouse
11038702	Ltpr2_m	Leishmania tropica response 2 (mouse)					2	103095716	167212356	Mouse
11039521	Ltpr2g_m	Leishmania tropica response 2g (mouse)					2	115212857	149212994	Mouse
12910799	Pwgrq2_m	pre-weaning growth rate QTL 2 (mouse)					2	118589253	160611165	Mouse
1558939	Gnf1_m	growth and fatness 1 (mouse)			Not determined		2	143773445	169117924	Mouse
1302174	Dssc2_m	dextran sodium sulfate induced colitis QTL2 (mouse)			Not determined		2	24224632	148700377	Mouse
12910795	Pwbwq5_m	post-weaning body weight QTL 5 (mouse)					2	118589253	160611165	Mouse
11353826	Bdln10_m	body length 10 (mouse)					2	140441482	174441482	Mouse
1300867	Lore2_m	loss of righting induced by ethanol 2 (mouse)			Not determined		2	144515861	180896594	Mouse
1300806	Aod4_m	autoimmune ovarian dysgenesis 4 (mouse)			Not determined		2	145228719	179228841	Mouse
4141033	Wg2d_m	weight gain in high growth mice 2d (mouse)			Not determined			143773445	160303008	Mouse
27226761	Feml18_m	femur length 18, 16 week (mouse)					2	94230345	154241920	Mouse
1301066	Otx2m2_m	orthodenticle homolog 2 (Drosophila) modifier 2 (mouse)			Not determined		2	123231973	148700377	Mouse
12910812	Pwgrq1_m	pre-weaning growth rate QTL 1 (mouse)					2	118589253	160611165	Mouse
1301961	Bts1_m	bladder tumor susceptibility 1 (mouse)			Not determined		2	132024159	166024330	Mouse
12910814	Pwbwq1_m	pre-weaning body weight QTL 1 (mouse)					2	118589253	160611165	Mouse
4141155	Plast2b_m	plasma plant sterol 2b (mouse)			Not determined		2	84013198	148522175	Mouse
1301618	Bglu1_m	blood glucose level 1 (mouse)			Not determined		2	117942930	174324863	Mouse
4141854	T2dm2sa_m	type 2 diabetes mellitus 2 in SMXA RI mice (mouse)			Not determined		2	29307947	148374934	Mouse
27226749	Femd10_m	femur midshaft diameter 10, 16 week (mouse)					2	124441920	168241920	Mouse
10045885	Cplaq15_m	circadian period of locomotor activity 15 (mouse)			Not determined		2	110916118	154354667	Mouse
10054066	Bwq9_m	body weight QTL 9 (mouse)			Not determined		2	135699221	169699361	Mouse
1302143	Bwq5_m	body weight (mouse)			Not determined		2	127664019	161664118	Mouse
10412082	Hylaq1_m	Hyperlocomotor activity related QTL 1 (mouse)			Not determined		2	84013198	148667470	Mouse
1301822	Pgia2_m	proteoglycan induced arthritis 2 (mouse)			Not determined		2	123937311	157937424	Mouse
10043956	Gnf5_m	growth and fatness 5 (mouse)			Not determined		2	135699221	169699361	Mouse
1302013	Tbbmd3_m	total body bone mineral density 3 (mouse)			Not determined		2	145196949	179197085	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
12880427	V25Dq3_m	vitamin D inactive form serum level QTL 3 (mouse)					2	129341920	163341920	Mouse
13504830	Bacsq1_m	baculum shape QTL 1 (mouse)					2	145716184	161016184	Mouse
12801456	Intmrm1_m	intima/media ratio modifier 1 (mouse)					2	142428347	176428450	Mouse
1301031	Bdln3_m	body length 3 (mouse)			Not determined		2	127664019	161664118	Mouse
1558881	Ses7_m	salmonella enteritidis susceptibility 7 (mouse)			Not determined		2	116306330	150306474	Mouse
12801461	Intim1_m	intima modifier 1 (mouse)					2	142428347	176428450	Mouse
11049566	Lmr28e_m	leishmaniasis resistance 28e (mouse)					2	133144911	167145058	Mouse
11049567	Lmr28f_m	leishmaniasis resistance 28f (mouse)					2	133144911	167145058	Mouse
1357484	Bsbob_m	BSB obesity (mouse)			Not determined		2	143773445	165665019	Mouse
4141703	Chlq13_m	circulating hormone level QTL 13 (mouse)			Not determined		2	135699221	169699361	Mouse
11341717	Rvfs1_m	Rift Valley fever susceptibility 1 (mouse)					2	135432544	173449616	Mouse
1301865	Hdlq19_m	HDL QTL 19 (mouse)			Not determined		2	145518775	179518926	Mouse
27226788	Feml13_m	femur length 13, 10 week (mouse)					2	102630345	159941920	Mouse
1301295	Prdt1_m	prion disease incubation time 1 (mouse)			Not determined		2	116077623	150077741	Mouse
1300846	Pbwg11_m	postnatal body weight growth 11 (mouse)			Not determined		2	138966600	172966729	Mouse
1301294	Hrtfm5_m	heart failure modifier 5 (mouse)			Not determined		2	122883015	156883131	Mouse

Markers in Region

RH125855

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	147,045,833 - 147,046,082	UniSTS	GRCm38
MGSCv37	2	146,871,569 - 146,871,818	UniSTS	GRCm37
Celera	2	148,301,229 - 148,301,478	UniSTS
Cytogenetic Map	2	H1	UniSTS
Whitehead/MRC_RH	2	1739.07	UniSTS

UniSTS:234548

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	147,077,701 - 147,077,884	UniSTS	GRCm38
MGSCv37	2	146,903,437 - 146,903,620	UniSTS	GRCm37
Celera	2	148,333,055 - 148,333,238	UniSTS
Cytogenetic Map	2	H1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001356402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001356403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_011917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011239519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030250983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK004800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK031247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK053643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL928876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC004028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC052395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC052823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC054743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D38517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000028921 ⟹ ENSMUSP00000028921

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	146,854,916 - 146,919,920 (+)	Ensembl
GRCm38.p6 Ensembl	2	147,012,996 - 147,078,000 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000136136

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	146,884,466 - 146,889,742 (+)	Ensembl
GRCm38.p6 Ensembl	2	147,042,546 - 147,047,822 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000137358

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	146,903,360 - 146,910,820 (+)	Ensembl
GRCm38.p6 Ensembl	2	147,061,440 - 147,068,900 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000147057

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	146,871,472 - 146,880,207 (+)	Ensembl
GRCm38.p6 Ensembl	2	147,029,552 - 147,038,287 (+)	Ensembl

RefSeq Acc Id:

NM_001356402 ⟹ NP_001343331

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	146,854,919 - 146,919,920 (+)	NCBI
GRCm38	2	147,012,999 - 147,078,000 (+)	NCBI

Sequence:

show sequence

GTAACTTCCGGCCGCTGAACGCACGTGGGAGGAAGTGCTGGTGCCCGCGGCTGCCGCTCCTGCT
AGTCTCGTTGGTTACACTCTCCCGCTGGCCCGGCTGCTGTTTCGAGCTGCCCGCTGGTCATGGG
AGTCCCGGCGTTCTTCCGCTGGCTCAGCCGCAAGTACCCGTCCATCATTGTCAACTGCGTGGAG
GAGAAGCCAAAAGAATGCAACGGTGTAAAGATTCCAGTTGATGCCAGTAAACCTAATCCAAATG
ATGTGGAGTTTGATAATCTGTATTTGGATATGAATGGGATCATCCACCCCTGCACTCATCCTGA
AGACAAACCAGCACCAAAAAATGAAGATGAAATGATGGTTGCAATTTTTGAGTACATTGACAGA
CTTTTCAATATTGTAAGACCAAGAAGACTTCTCTACATGGCAATAGATGGGGTGGCACCACGTG
CAAAAATGAATCAGCAGCGTTCAAGGAGGTTCAGAGCATCAAAGGAAGGAATGGAAGCAGCAGT
TGAGAAGCAGCGAGTCAGAGAGGAAATACTTGCAAAAGGGAACTGAGTTCATGGACAATCTTGC
TAAATGCCTTCGCTATTACATAGCTGATCGTTTAAATAATGACCCTGGGTGGAAAAATTTGACA
GTTATATTATCTGATGCTAGTGCACCTGGTGAAGGAGAACACAAAATCATGGATTACATTAGAA
GACAAAGAGCCCAGCCTAACCATGACCCAAATACTCATCATTGTTTGTGTGGAGCTGATGCTGA
TCTAATTATGCTTGGTCTTGCTACACATGAACCTAACTTCACCATAATCAGAGAAGAATTCAAA
CCAAATAAACCTAAACCATGTGCTCTTTGTAATCAGTTTGGACACGAGGTCAAGGATTGTGAAG
GTTTGCCAAGAGAAAAGAAGGGAAAGCATGATGAACTTGCAGATAGTCTTCCTTGTGCAGAAGG
GGAGTTTATCTTCCTTCGGCTGAATGTCCTTCGAGAGTATCTGGAAAGAGAACTCACCATGGCC
AGCTTACCATTCCCATTTGATGTGGAGAGGAGCATTGATGACTGGGTGTTCATGTGCTTCTTTG
TGGGGAATGATTTCCTTCCTCACTTGCCATCACTAGAGATTAGGGAAGGTGCAATTGATCGTTT
GGTTAACATATACAAAAACGTGGTACACAAAACTGGGGGTTACCTTACAGAAAGTGGTTATGTC
AATCTGCAAAGAGTACAGATGATCATGTTAGCAGTTGGTGAAGTTGAGGATAGCATTTTTAAAA
AGAGAAAAGATGATGAGGACAGTTTTAGAAGACGACAGAAAGAAAAAAGAAAGAGGATGAAGAG
AGATCAACCAGCTTTTACTCCTAGTGGAATATTAACACCTCATGCCTTGGGTTCAAGAAATTCA
CCAGGTTGTCAAGTAGCCAGTAATCCAAGACAAGCAGCCTATGAAATGAGGATGCAGAGAAACT
CTAGTCCTTCAATATCTCCTAATACAAGTTTTGCATCTGATGGCTCCCCATCTCCACTAGGAGG
AATTAAGAGAAAAGCAGAAGACAGTGACAGTGAGCCAGAGCCAGAGGATAACGTCAGGTTATGG
GAAGCTGGTTGGAAGCAACGATACTACAAGAACAAATTTGATGTAGATGCAGCTGATGAGAAAT
TCCGACGTAAGGTTGTTCAGTCCTACGTTGAAGGACTGTGCTGGGTTCTTCGCTATTATTACCA
GGGCTGTGCTTCCTGGAAGTGGTATTATCCATTCCATTATGCACCATTTGCCTCAGACTTTGAA
GGTATTGCAGACATGTCCTCTGAATTTGAAAAGGGCACAAAACCGTTTAAGCCACTGGAACAAC
TAATGGGGGTTTTCCCAGCTGCAAGTGGTAACTTTCTACCTCCAACATGGCGGAAGCTCATGAG
TGACCCTGATTCCAGTATAATTGACTTCTATCCTGAAGATTTTGCTATTGATTTGAATGGGAAG
AAATATGCATGGCAAGGTGTTGCTCTATTGCCATTTGTGGATGAGCGAAGGCTGCGAGCGGCTC
TAGAAGAGGTGTACCCAGACCTCACTCCAGAAGAGAACAGGAGAAATAGTCTTGGAGGTGATGT
TTTGTTTGTGGGAAAACTTCATCCACTACGCGACTTCATTTTAGAGCTGTATCAGACGGGTTCC
ACAGAGCCAGTTGATGTGCCACCTGAATTGTGTCACGGGATTCAAGGGACGTTTTCTTTGGATG
AAGAAGCCATTCTTCCAGACCAAACAGTATGTTCCCCTGTGCCCATGTTGCGGGACCTGACACA
GAACACTGCAGTCAGTATTAATTTTAAAGATCCACAGTTTGCTGAAGATTATGTTTTTAAAGCT
GCAATGCTTCCAGGAGCAAGAAAGCCAGCAACAGTTCTGAAACCTGGTGACTGGGAAAAATCCA
GCAATGGGCGGCAATGGAAACCTCAGCTTGGCTTTAACCGGGACCGGCGGCCTGTTCACCTGGA
CCAGGCAGCCTTTAGAACTTTAGGCCATGTTACACCAAGAGGCTCGGGGACGAGTGTTTATACG
AACACTGCACTACCACCTGCCAATTACCAGGGGAACAATTACAGGCCACTGCTGAGAGGTCAAG
CTCAGATCCCAAAACTTATGTCAAATATGAGGCCCCAAGATTCCTGGCGAGGCCCTCCTCCTCT
TTTCCAGCAGCATAGATTTGAGAGAAGTGTTGGAGCTGAACCTCTACTGCCATGGAACCGGATG
ATCCAAAACCAAAATGCAGCCTTTCAGCCAAATCAGTACCAGATGCTAGGAGGACCTGGAGGCT
ATCCACCCAGACGTGACGATCACCGAGGAGGGAGACAGGGATATCCCAGAGAAGGACGGAAATA
CCCTTTGCCACCACCCTCGGGAAGATACAGTTGGAATTAGGCTTTTGTAAAGCTTTCCACATTC
CTTTTACCAGTCTACATTTTTATGCTATTTGTGGAAAGGTTTCTTTCTCAAGTAGTAGTTTTTA
ATAAAACTACAGTACTTTGTGTATTTCTTTTATCTGTGTGTATATTTTTACTGATCTGATCTCA
CTGTTTCATGCTGCTTTCCAGAGATGTGTATGGCATAATACAGTGGGTCTGAATTTATTATTGC
TTGTAAACACATTTGACGAAATTAGGAGTCCTGGGTTTTCATTATGGTTAAAATTCAAAACAGC
TCTATGCTGATTTTAATGCACATTAATAATTAGGTATGGACATTGAGCTGCACATTCTGCAGAC
GAGCATATATTGCTCAACATTTCTTTGAAAACATTTCATTAAAGTACTTGACTTACAGAAATTT
GTGGACTTTAGTAAAAAAATAAAAATAAAGCTAAACTTTAAAAA

hide sequence

RefSeq Acc Id:

NM_001356403 ⟹ NP_001343332

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	146,854,919 - 146,919,920 (+)	NCBI
GRCm38	2	147,012,999 - 147,078,000 (+)	NCBI

Sequence:

show sequence

GTAACTTCCGGCCGCTGAACGCACGTGGGAGGAAGTGCTGGTGCCCGCGGCTGCCGCTCCTGCT
AGTCTCGTTGGTTACACTCTCCCGCTGGCCCGGCTGCTGTTTCGAGCTGCCCGCTGGTCATGGG
AGTCCCGGCGTTCTTCCGCTGGCTCAGCCGCAAGTACCCGTCCATCATTGTCAACTGCGTGGAG
GAGAAGCCAAAAGAATGCAACGGTGTAAAGATTCCAGTTGATGCCAGTAAACCTAATCCAAATG
ATGTGGAGTTTGATAATCTGTATTTGGATATGAATGGGATCATCCACCCCTGCACTCATCCTGA
AGACAAACCAGCACCAAAAAATGAAGATGAAATGATGGTTGCAATTTTTGAGTACATTGACAGA
CTTTTCAATATTGTAAGACCAAGAAGACTTCTCTACATGGCAATAGATGGGGTGGCACCACGTG
CAAAAATGAATCAGCAGCGTTCAAGGAGGTTCAGAGCATCAAAGGAAGGAATGGAAGCAGCAGT
TGAGAAGCAGCGAGTCAGAGAGGAAATACTTGCAAAAGGTGGCTTTCTTCCTCCAGAAGAAATA
AAAGAAAGATTTGACAGCAACTGTATTACCCCAGGAACTGAGTTCATGGACAATCTTGCTAAAT
GCCTTCGCTATTACATAGCTGATCGTTTAAATAATGACCCTGGGTGGAAAAATTTGACAGTTAT
ATTATCTGATGCTAGTGCACCTGGTGAAGGAGAACACAAAATCATGGATTACATTAGAAGACAA
AGAGCCCAGCCTAACCATGACCCAAATACTCATCATTGTTTGTGTGGAGCTGATGTTTGGACAC
GAGGTCAAGGATTGTGAAGGTTTGCCAAGAGAAAAGAAGGGAAAGCATGATGAACTTGCAGATA
GTCTTCCTTGTGCAGAAGGGGAGTTTATCTTCCTTCGGCTGAATGTCCTTCGAGAGTATCTGGA
AAGAGAACTCACCATGGCCAGCTTACCATTCCCATTTGATGTGGAGAGGAGCATTGATGACTGG
GTGTTCATGTGCTTCTTTGTGGGGAATGATTTCCTTCCTCACTTGCCATCACTAGAGATTAGGG
AAGGTGCAATTGATCGTTTGGTTAACATATACAAAAACGTGGTACACAAAACTGGGGGTTACCT
TACAGAAAGTGGTTATGTCAATCTGCAAAGAGTACAGATGATCATGTTAGCAGTTGGTGAAGTT
GAGGATAGCATTTTTAAAAAGAGAAAAGATGATGAGGACAGTTTTAGAAGACGACAGAAAGAAA
AAAGAAAGAGGATGAAGAGAGATCAACCAGCTTTTACTCCTAGTGGAATATTAACACCTCATGC
CTTGGGTTCAAGAAATTCACCAGGTTGTCAAGTAGCCAGTAATCCAAGACAAGCAGCCTATGAA
ATGAGGATGCAGAGAAACTCTAGTCCTTCAATATCTCCTAATACAAGTTTTGCATCTGATGGCT
CCCCATCTCCACTAGGAGGAATTAAGAGAAAAGCAGAAGACAGTGACAGTGAGCCAGAGCCAGA
GGATAACGTCAGGTTATGGGAAGCTGGTTGGAAGCAACGATACTACAAGAACAAATTTGATGTA
GATGCAGCTGATGAGAAATTCCGACGTAAGGTTGTTCAGTCCTACGTTGAAGGACTGTGCTGGG
TTCTTCGCTATTATTACCAGGGCTGTGCTTCCTGGAAGTGGTATTATCCATTCCATTATGCACC
ATTTGCCTCAGACTTTGAAGGTATTGCAGACATGTCCTCTGAATTTGAAAAGGGCACAAAACCG
TTTAAGCCACTGGAACAACTAATGGGGGTTTTCCCAGCTGCAAGTGGTAACTTTCTACCTCCAA
CATGGCGGAAGCTCATGAGTGACCCTGATTCCAGTATAATTGACTTCTATCCTGAAGATTTTGC
TATTGATTTGAATGGGAAGAAATATGCATGGCAAGGTGTTGCTCTATTGCCATTTGTGGATGAG
CGAAGGCTGCGAGCGGCTCTAGAAGAGGTGTACCCAGACCTCACTCCAGAAGAGAACAGGAGAA
ATAGTCTTGGAGGTGATGTTTTGTTTGTGGGAAAACTTCATCCACTACGCGACTTCATTTTAGA
GCTGTATCAGACGGGTTCCACAGAGCCAGTTGATGTGCCACCTGAATTGTGTCACGGGATTCAA
GGGACGTTTTCTTTGGATGAAGAAGCCATTCTTCCAGACCAAACAGTATGTTCCCCTGTGCCCA
TGTTGCGGGACCTGACACAGAACACTGCAGTCAGTATTAATTTTAAAGATCCACAGTTTGCTGA
AGATTATGTTTTTAAAGCTGCAATGCTTCCAGGAGCAAGAAAGCCAGCAACAGTTCTGAAACCT
GGTGACTGGGAAAAATCCAGCAATGGGCGGCAATGGAAACCTCAGCTTGGCTTTAACCGGGACC
GGCGGCCTGTTCACCTGGACCAGGCAGCCTTTAGAACTTTAGGCCATGTTACACCAAGAGGCTC
GGGGACGAGTGTTTATACGAACACTGCACTACCACCTGCCAATTACCAGGGGAACAATTACAGG
CCACTGCTGAGAGGTCAAGCTCAGATCCCAAAACTTATGTCAAATATGAGGCCCCAAGATTCCT
GGCGAGGCCCTCCTCCTCTTTTCCAGCAGCATAGATTTGAGAGAAGTGTTGGAGCTGAACCTCT
ACTGCCATGGAACCGGATGATCCAAAACCAAAATGCAGCCTTTCAGCCAAATCAGTACCAGATG
CTAGGAGGACCTGGAGGCTATCCACCCAGACGTGACGATCACCGAGGAGGGAGACAGGGATATC
CCAGAGAAGGACGGAAATACCCTTTGCCACCACCCTCGGGAAGATACAGTTGGAATTAGGCTTT
TGTAAAGCTTTCCACATTCCTTTTACCAGTCTACATTTTTATGCTATTTGTGGAAAGGTTTCTT
TCTCAAGTAGTAGTTTTTAATAAAACTACAGTACTTTGTGTATTTCTTTTATCTGTGTGTATAT
TTTTACTGATCTGATCTCACTGTTTCATGCTGCTTTCCAGAGATGTGTATGGCATAATACAGTG
GGTCTGAATTTATTATTGCTTGTAAACACATTTGACGAAATTAGGAGTCCTGGGTTTTCATTAT
GGTTAAAATTCAAAACAGCTCTATGCTGATTTTAATGCACATTAATAATTAGGTATGGACATTG
AGCTGCACATTCTGCAGACGAGCATATATTGCTCAACATTTCTTTGAAAACATTTCATTAAAGT
ACTTGACTTACAGAAATTTGTGGACTTTAGTAAAAAAATAAAAATAAAGCTAAACTTTAAAAA

hide sequence

RefSeq Acc Id:

NM_011917 ⟹ NP_036047

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	146,854,919 - 146,919,920 (+)	NCBI
GRCm38	2	147,012,999 - 147,078,000 (+)	NCBI
MGSCv37	2	146,838,796 - 146,903,736 (+)	RGD
Celera	2	148,268,335 - 148,333,354 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

GTAACTTCCGGCCGCTGAACGCACGTGGGAGGAAGTGCTGGTGCCCGCGGCTGCCGCTCCTGCT
AGTCTCGTTGGTTACACTCTCCCGCTGGCCCGGCTGCTGTTTCGAGCTGCCCGCTGGTCATGGG
AGTCCCGGCGTTCTTCCGCTGGCTCAGCCGCAAGTACCCGTCCATCATTGTCAACTGCGTGGAG
GAGAAGCCAAAAGAATGCAACGGTGTAAAGATTCCAGTTGATGCCAGTAAACCTAATCCAAATG
ATGTGGAGTTTGATAATCTGTATTTGGATATGAATGGGATCATCCACCCCTGCACTCATCCTGA
AGACAAACCAGCACCAAAAAATGAAGATGAAATGATGGTTGCAATTTTTGAGTACATTGACAGA
CTTTTCAATATTGTAAGACCAAGAAGACTTCTCTACATGGCAATAGATGGGGTGGCACCACGTG
CAAAAATGAATCAGCAGCGTTCAAGGAGGTTCAGAGCATCAAAGGAAGGAATGGAAGCAGCAGT
TGAGAAGCAGCGAGTCAGAGAGGAAATACTTGCAAAAGGTGGCTTTCTTCCTCCAGAAGAAATA
AAAGAAAGATTTGACAGCAACTGTATTACCCCAGGAACTGAGTTCATGGACAATCTTGCTAAAT
GCCTTCGCTATTACATAGCTGATCGTTTAAATAATGACCCTGGGTGGAAAAATTTGACAGTTAT
ATTATCTGATGCTAGTGCACCTGGTGAAGGAGAACACAAAATCATGGATTACATTAGAAGACAA
AGAGCCCAGCCTAACCATGACCCAAATACTCATCATTGTTTGTGTGGAGCTGATGCTGATCTAA
TTATGCTTGGTCTTGCTACACATGAACCTAACTTCACCATAATCAGAGAAGAATTCAAACCAAA
TAAACCTAAACCATGTGCTCTTTGTAATCAGTTTGGACACGAGGTCAAGGATTGTGAAGGTTTG
CCAAGAGAAAAGAAGGGAAAGCATGATGAACTTGCAGATAGTCTTCCTTGTGCAGAAGGGGAGT
TTATCTTCCTTCGGCTGAATGTCCTTCGAGAGTATCTGGAAAGAGAACTCACCATGGCCAGCTT
ACCATTCCCATTTGATGTGGAGAGGAGCATTGATGACTGGGTGTTCATGTGCTTCTTTGTGGGG
AATGATTTCCTTCCTCACTTGCCATCACTAGAGATTAGGGAAGGTGCAATTGATCGTTTGGTTA
ACATATACAAAAACGTGGTACACAAAACTGGGGGTTACCTTACAGAAAGTGGTTATGTCAATCT
GCAAAGAGTACAGATGATCATGTTAGCAGTTGGTGAAGTTGAGGATAGCATTTTTAAAAAGAGA
AAAGATGATGAGGACAGTTTTAGAAGACGACAGAAAGAAAAAAGAAAGAGGATGAAGAGAGATC
AACCAGCTTTTACTCCTAGTGGAATATTAACACCTCATGCCTTGGGTTCAAGAAATTCACCAGG
TTGTCAAGTAGCCAGTAATCCAAGACAAGCAGCCTATGAAATGAGGATGCAGAGAAACTCTAGT
CCTTCAATATCTCCTAATACAAGTTTTGCATCTGATGGCTCCCCATCTCCACTAGGAGGAATTA
AGAGAAAAGCAGAAGACAGTGACAGTGAGCCAGAGCCAGAGGATAACGTCAGGTTATGGGAAGC
TGGTTGGAAGCAACGATACTACAAGAACAAATTTGATGTAGATGCAGCTGATGAGAAATTCCGA
CGTAAGGTTGTTCAGTCCTACGTTGAAGGACTGTGCTGGGTTCTTCGCTATTATTACCAGGGCT
GTGCTTCCTGGAAGTGGTATTATCCATTCCATTATGCACCATTTGCCTCAGACTTTGAAGGTAT
TGCAGACATGTCCTCTGAATTTGAAAAGGGCACAAAACCGTTTAAGCCACTGGAACAACTAATG
GGGGTTTTCCCAGCTGCAAGTGGTAACTTTCTACCTCCAACATGGCGGAAGCTCATGAGTGACC
CTGATTCCAGTATAATTGACTTCTATCCTGAAGATTTTGCTATTGATTTGAATGGGAAGAAATA
TGCATGGCAAGGTGTTGCTCTATTGCCATTTGTGGATGAGCGAAGGCTGCGAGCGGCTCTAGAA
GAGGTGTACCCAGACCTCACTCCAGAAGAGAACAGGAGAAATAGTCTTGGAGGTGATGTTTTGT
TTGTGGGAAAACTTCATCCACTACGCGACTTCATTTTAGAGCTGTATCAGACGGGTTCCACAGA
GCCAGTTGATGTGCCACCTGAATTGTGTCACGGGATTCAAGGGACGTTTTCTTTGGATGAAGAA
GCCATTCTTCCAGACCAAACAGTATGTTCCCCTGTGCCCATGTTGCGGGACCTGACACAGAACA
CTGCAGTCAGTATTAATTTTAAAGATCCACAGTTTGCTGAAGATTATGTTTTTAAAGCTGCAAT
GCTTCCAGGAGCAAGAAAGCCAGCAACAGTTCTGAAACCTGGTGACTGGGAAAAATCCAGCAAT
GGGCGGCAATGGAAACCTCAGCTTGGCTTTAACCGGGACCGGCGGCCTGTTCACCTGGACCAGG
CAGCCTTTAGAACTTTAGGCCATGTTACACCAAGAGGCTCGGGGACGAGTGTTTATACGAACAC
TGCACTACCACCTGCCAATTACCAGGGGAACAATTACAGGCCACTGCTGAGAGGTCAAGCTCAG
ATCCCAAAACTTATGTCAAATATGAGGCCCCAAGATTCCTGGCGAGGCCCTCCTCCTCTTTTCC
AGCAGCATAGATTTGAGAGAAGTGTTGGAGCTGAACCTCTACTGCCATGGAACCGGATGATCCA
AAACCAAAATGCAGCCTTTCAGCCAAATCAGTACCAGATGCTAGGAGGACCTGGAGGCTATCCA
CCCAGACGTGACGATCACCGAGGAGGGAGACAGGGATATCCCAGAGAAGGACGGAAATACCCTT
TGCCACCACCCTCGGGAAGATACAGTTGGAATTAGGCTTTTGTAAAGCTTTCCACATTCCTTTT
ACCAGTCTACATTTTTATGCTATTTGTGGAAAGGTTTCTTTCTCAAGTAGTAGTTTTTAATAAA
ACTACAGTACTTTGTGTATTTCTTTTATCTGTGTGTATATTTTTACTGATCTGATCTCACTGTT
TCATGCTGCTTTCCAGAGATGTGTATGGCATAATACAGTGGGTCTGAATTTATTATTGCTTGTA
AACACATTTGACGAAATTAGGAGTCCTGGGTTTTCATTATGGTTAAAATTCAAAACAGCTCTAT
GCTGATTTTAATGCACATTAATAATTAGGTATGGACATTGAGCTGCACATTCTGCAGACGAGCA
TATATTGCTCAACATTTCTTTGAAAACATTTCATTAAAGTACTTGACTTACAGAAATTTGTGGA
CTTTAGTAAAAAAATAAAAATAAAGCTAAACTTTAAAAA

hide sequence

RefSeq Acc Id:

XM_011239519 ⟹ XP_011237821

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	146,854,672 - 146,901,930 (+)	NCBI
GRCm38	2	147,012,755 - 147,060,010 (+)	NCBI

Sequence:

show sequence

GATAGGCCACGCCTTTCCAAAGTCTCGGCCACACAAGGACTTTGCGGCTGCGGGCCTAATGTGG
CCGGCGCTCTTGGCTGGATTGCCGGAGAAGGCATCCGCCAGGAGTCGGCTCTCAAAGGCTTTAC
CAGAGAACGCGGCGAGCCAGGTCTACAGCTCGCCCAGCCGGGCCTCCACTCCGGCAGTCTAAAT
GAACTTCCACTTAACCGAGCTCCTTTCCCTGCATCCCCCGCGGTGGTGGTATGACGTAACTTCC
GGCCGCTGAACGCACGTGGGAGGAAGTGCTGGTGCCCGCGGCTGCCGCTCCTGCTAGTCTCGTT
GGTTACACTCTCCCGCTGGCCCGGCTGCTGTTTCGAGCTGCCCGCTGGTCATGGGAGTCCCGGC
GTTCTTCCGCTGGCTCAGCCGCAAGTACCCGTCCATCATTGTCAACTGCGTGGAGGAGAAGCCA
AAAGAATGCAACGGTGTAAAGATTCCAGTTGATGCCAGTAAACCTAATCCAAATGATGTGGAGT
TTGATAATCTGTATTTGGATATGAATGGGATCATCCACCCCTGCACTCATCCTGAAGACAAACC
AGCACCAAAAAATGAAGATGAAATGATGGTTGCAATTTTTGAGTACATTGACAGACTTTTCAAT
ATTGTAAGACCAAGAAGACTTCTCTACATGGCAATAGATGGGGTGGCACCACGTGCAAAAATGA
ATCAGCAGCGTTCAAGGAGGTTCAGAGCATCAAAGGAAGGAATGGAAGCAGCAGTTGAGAAGCA
GCGAGTCAGAGAGGAAATACTTGCAAAAGGTGGCTTTCTTCCTCCAGAAGAAATAAAAGAAAGA
TTTGACAGCAACTGTATTACCCCAGGAACTGAGTTCATGGACAATCTTGCTAAATGCCTTCGCT
ATTACATAGCTGATCGTTTAAATAATGACCCTGGGTGGAAAAATTTGACAGTTATATTATCTGA
TGCTAGTGCACCTGGTGAAGGAGAACACAAAATCATGGATTACATTAGAAGACAAAGAGCCCAG
CCTAACCATGACCCAAATACTCATCATTGTTTGTGTGGAGCTGATGCTGATCTAATTATGCTTG
GTCTTGCTACACATGAACCTAACTTCACCATAATCAGAGAAGAATTCAAACCAAATAAACCTAA
ACCATGTGCTCTTTGTAATCAGTTTGGACACGAGGTCAAGGATTGTGAAGGTTTGCCAAGAGAA
AAGAAGGGAAAGCATGATGAACTTGCAGATAGTCTTCCTTGTGCAGAAGGGGAGTTTATCTTCC
TTCGGCTGAATGTCCTTCGAGAGTATCTGGAAAGAGAACTCACCATGGCCAGCTTACCATTCCC
ATTTGATGTGGAGAGGAGCATTGATGACTGGGTGTTCATGTGCTTCTTTGTGGGGAATGATTTC
CTTCCTCACTTGCCATCACTAGAGATTAGGGAAGGTGCAATTGATCGTTTGGTTAACATATACA
AAAACGTGGTACACAAAACTGGGGGTTACCTTACAGAAAGTGGTTATGTCAATCTGCAAAGAGT
ACAGATGATCATGTTAGCAGTTGGTGAAGTTGAGGATAGCATTTTTAAAAAGAGAAAAGATGAT
GAGGACAGTTTTAGAAGACGACAGAAAGAAAAAAGAAAGAGGATGAAGAGAGATCAACCAGCTT
TTACTCCTAGTGGAATATTAACACCTCATGCCTTGGGTTCAAGAAATTCACCAGGTTGTCAAGT
AGCCAGTAATCCAAGACAAGCAGCCTATGAAATGAGGATGCAGAGAAACTCTAGTCCTTCAATA
TCTCCTAATACAAGTTTTGCATCTGATGGCTCCCCATCTCCACTAGGAGGAATTAAGAGAAAAG
CAGAAGACAGTGACAGTGAGCCAGAGCCAGAGGATAACGTCAGGTTATGGGAAGCTGGTTGGAA
GCAACGATACTACAAGAACAAATTTGATGTAGATGCAGCTGATGAGAAATTCCGACGTAAGGTT
GTTCAGTCCTACGTTGAAGGACTGTGCTGGGTTCTTCGCTATTATTACCAGGGCTGTGCTTCCT
GGAAGTGGTATTATCCATTCCATTATGCACCATTTGCCTCAGACTTTGAAGGTATTGCAGACAT
GTCCTCTGAATTTGAAAAGGGCACAAAACCGTTTAAGCCACTGGAACAACTAATGGGGGTTTTC
CCAGCTGCAAGTGGTAACTTTCTACCTCCAACATGGCGGAAGCTCATGAGTGACCCTGATTCCA
GTATAATTGACTTCTATCCTGAAGATTTTGCTATTGATTTGAATGGGAAGAAATATGCATGGCA
AGGTGTTGCTCTATTGCCATTTGTGGATGAGCGAAGGCTGCGAGCGGCTCTAGAAGAGGTGTAC
CCAGACCTCACTCCAGAAGAGAACAGGAGAAATAGTCTTGGAGGTGATGTTTTGTTTGTGGGAA
AACTTCATCCACTACGCGACTTCATTTTAGAGCTGTATCAGACGGGTTCCACAGAGCCAGTTGA
TGTGCCACCTGAATTGTGTCACGGGATTCAAGGGACGTTTTCTTTGGATGAAGAAGCCATTCTT
CCAGACCAAACAGTATGTTCCCCTGTGCCCATGTTGCGGGACCTGACACAGAACACTGCAGTCA
GGGAGAAGTACAGACTTGAAAGCCATGCTCATAAGCCCATCACAAACAATCTGGCTCTGTCAAA
TTTATTGTGGACACTGCATTAACCTGTGGGAGCTCAGTGTCTCATTGGTGCCTCAGGCCAGTTG
ATTACATTCGTTTTCTTTTTGAATTGTCACAGTTTTGTTCGTACTAGTTGGGTTTTCTTCATTT
TTCAAAGATTTTACTACCTAGCCCTCTAGAAACAGTTAATTCTACTCAAGCTTCTAATTAGGAA
AGAGAACGTTTCCTGAGAGAGTTACCGATCAGTGGATGAGTTTTGCAGTATTTTGGGGTGATAG
ATGTTGCTCTGCGCGTTCATTGTTTCTGAACCTGAAGGGCATTATAATGTTTGATATGAATGAG
TCCCTGTGTTCATTAAATTTACAAAACAAATCCAAGATCTAGGTGCAAATTCAGCTATATGTTG
AAAGTTTAACTTCAAACATGGAACTTTTTGAGTTAATTTTGTAAAGATTTGTGGAAAACTTGAG
CTAATTTTTATCTTTCAATGTAATTTTCAGCATTTTCTCTGAAATGGTGTTGAGACCATGGTCC
AGTTTTCTACAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACATAT
GCAAGTTGCAGTTAAATTTGTTTGGTGAATGAAGACCAAAAAATAGAACTTTCCAGTCAGTGTC
TATCTACCTCCTGCTTGAGAAACTCTTTCCTCAGATGGACTTTGGATTGGTTCCTGTCATATCT
GGTCTTATCTTTAGTACTGAGAAAGTGTGTTATTACACAAATTACTAGGGTACTTCAAGTTCAC
GTCTTCAGGAAGGGTTATTTTTCTTTTAATTGGATTGTGTATGAATGGAATTTTAAATGTAACG
ATTACCACAGTATTTATAAGGCTCACAGCTGGCAGATAGGTAACTATGAATCCAAAGCCTGAAG
GAAGTGGAATACACACACTCAGCAGCAGATTGCATGGTGGAAACCACTGGGGAGGGTTTAGCTG
ACACTGCCTGCAGTCCTTTGTAGGACACTGAACTAGATAACTTCTCCTCATAGAATGTCACAAT
TCTGCAAACTCTTTAAGTGCTTTAAAATGTCAAGTGTATGAATCATCAAAACTTCCCTGCAAGA
ATAGTTTGCATTGCCATGCTGGGTTAGCATTAATCCCAGAGTGGATAGGGAAAGGTAGAAGAAA
AATGAAGGTTGTCATTTGGAGTTTTCTCCTTGCTTTGAATAGAGTGCTCCCATTCTTAAACAGT
AATGTTGAAATAGCATTTGTCAGAATAATTTCTTTTTGTTTTAAAATTTGTTATGAGACATGCA
GGTACATGGTGAGCTCAGAGGGCGGGGTTGGGGAGGAGGTTGCACAAGCATATGTGTCGGTCAG
AAGACAGCTCTATGGAGTTGGGTCTTCTCTTCCACCTTCTTGTGGGTTTCAGAGATTAAATTCA
GATCACCAGGTTTGTGCAGTAAATGCCTTTACCCTCTGCACCATTTTGACAGCTCCTAAGAATA
ACTCTTAAGATGAACTAAGTCAGAAGAGATGTCGTGCATCTACAGGATCTTCTATGGTATACAA
ATAAACGTGTTAGTTCCTTATTTTCAACGATATTTAGGATCTACACTTTTATTTATTTCACCTC
TATCACATTTGTGAGGAAGTTAAAATGAAATACAACTGGCAAGGAAGGGGTGTGTTATACTCTC
AGCTGGTAGGAGGAAACCAATGTTGAAACAGCATGGTTACATCTATGTTAGGTAAAAGCAGGTG
AAAATACTCTCAGGTGCATAGAGTTGCATGGAATAATGTAAATCTCAACATGGTTCTCTGACTT
GGCTAAGCAGCCTATTGAGTCTATAGGCTGGCCTGGTTTAGGTGCTTTTGTTTAAGGCTTTGTG
GCAAGGGTCCTACCATACAGCTACAGGCCATTTGTATACTGTCTTTCCTTTTCCTTGGACTTAA
AGTGAGGGTTCAGGTGTTCCTCTGCTTCCTCTTCCTAGATAAATTGTGCACACCTGGTTTCTGT
TTCTGGTTGTGGAGATTGTCGATGGTCATCTGTATGTTTCTCTTCAGTGCTCTACCTGAACAAT
TTAAAAATAATAAACCTGAGAGAAGTGAAGGACTCTGAAATGTTTGGACCTGTATAAAAGATTA
TCTGTAGCCAAAGATATATCAGTCGGTAACTGTGCTTGCCATTAAACCTGGAAGACTGGTTCGG
TCTCAGAAGCCCACATGGAAGTAGAGAACCAGAAAACTCCTACAAGCTGTCTCTGTCCTTCATA
CTTGTGCCACAACCGTATGTGTGCTGCTGCATAAACAAACATATCAATAGATGAAATGATCTTT
TAAAAGGCTTTTGAACTGAAATAGATTTTTTTTCCTCGTTGGATCTTGCCTACTAGGTATTTTG
CTTTCAGAAATAAGTTTGTGCTGTGGCTAACGTTACCACATTGGAAATTGCATTTCTAAAAAAA
ATATGAAAGAACTTTTAAAGGAATTATTTAAAATTTTAGAAGTCTTTAACTTTAGGAGAAAGAC
TATTCTTATTGTGGCCTCAGATATTCAAAGAAAAGAATGATTTAGTCTTTAAGATTATCCTTGC
CCCCTGAATTAGAATGTCAAAATTTACTTTTAGGTACTTTTTCTCTTTCTAAATGATTTGTACT
ATCTTAAATATAAAAATCATTGTGTGGGTGTGGTTCTGAGAGGAGTTTGGGGAATTTATTTTCT
ATATTGGCTTAAAAAATTTTTTCCTTCAGAGCATAAGTATGGAAGATGAACATTTTAAACACTT
AAAGCAATGGTACATAAAGTCACTTGCATGTGTTTTGTAAATAAGTGTATCTCTCTTCCCAAAT
GCTAGTTTGAGCTCTTAACTAAATCTCATTGTTATCTCAGTAAGTGCATGCTGGAGCATACCTT
TATTTCCAGAGCTTAGGAGGCAGAGGCAGGCAGATTTCTTGAGTTTGAGGCCAGCCTTGTGTAC
AGATTTAGAGGAAATGATCTTTCGCACCCCAGGACTGTTTTCTCTTCCTGGGAGCTTGTTCTTT
TGCTGGTTTTCTTCATTATTCTAGTTTCAGGTCATTCCACGGGTAACTTGCTGGTATATTTGCA
TCTCAGCCTATCATTTGAACTTGAACATCATTCTGGTTTCATCTCCACATTGCACGTGCTTCCT
GACGAGCTCCACATTATCTCAGATGCCTAGTGAAGGCTCTTGCCTGAACTTTCTAGGTTTTTTC
CACATGAGAATAAAGACTGGAGAGTTTAGACATTTGTTGTATGTGACTGTAGAATAGTACTAGC
TTTGTGTGTTCCTTGGGAGAATTCGGTAAGTACATTATTTTTGTAGGGTTCACAGTTCTCATAG
ATCTTTATTGAGAAGGACTACTTGAATTAAATTAAGCTTTTCATGGTCTTGGGAAGAAGACCAT
GCCTCTGTTCCCTCAATTGAAACCTTGACCTGTGTTGACTGTGAGTGCACTGCAGGTGACGGTT
CCGTACACGGCACAACTTTAAAATTCCCTGTACATGCAGTATACCACTGTATGCACCACATTTC
TTTATCATCATTTTTGTACAAGGCCATATTAGTGACTGTATCTTGTTTATTGCGAATATTGCTG
CAGTAGATGTGGAGATGTAGCCATCTTTTTGTTTCTTTTAGTTTTATACCTGGCAGTGGGATTG
CCTTATAGGCATTGTGTCTTTTAGGGTTTTTTGTTTGTTTGTTGTTGTTGTTTTGTTTTGCTTT
AGAATTGTAAACATTTTTCCATAATGTAACTATAACATGTGTTCCCACAGTAGGTGAGAGTTCC
TTTTCCACCCCGAGTACTCAGGAGGCTCAGGCAGGAAGAACAAGAGTTTATGGCCAGTTGGGTT
GTGTATGTAGTGACCAGCAATTAAACCTACTAGAAAAGGGAAAATACTTCAGGATTTGGAGTAG
GCAAAGATTATTTTTTAAAAATGAGATCCTAAATTCACAGACCACAAAAGCAGCAGCAGTAACA
CGAGCCTACTGTTTAAAAAAATTAACCATTTTTTAAAATCCCCTTTCTAGATCCTCATCAACAT
TTGTTACTTTTTGTCTTTTTAATAGTTAAGCTGTAATACTGAATTGGAAGGACTTCTTCTGGTT
GATTTGAATTCCTTGCTGACTTGTGACTCTGTTTCTCTCATATAATTGCTAGCCATTTGTCTTG
TCTTTTGAGAGATATCCAATAGCCTTTAAATTTTGTCATTTCATTACATAGTCTGGGTACTATA
GCTTCTGTCTGGTTAATAGTTTGCATATACGTACTTCCATTCAATAAATAATCTTTGCCTACTC
TAAATCCTAAAGTATATTTCCTGTTCTAGTAGTTTAATAATCACTGGTCATATATTTGTATCTT
TTGAGTTGTTTAAGGTGAAACATGGTGGCTAGCTTTTATTTTTCTGCATATGTATATACATTTT
CCCAACATTTGTTGAGCATTGTATGTTCTTGATACCTTTGTCAAACTCAGGTGGCTGTGAAGAC
ACCAATTAATTTCTAGAGTTTTTGTCATGGTCTGCTGGTTTCTGTGTCTGCATTTTGAAGTCAA
AGTCTGTGGCACGTCAGCTTTGTTTGGTTTTGCTCAGGATGCTTTATTTGCTATGGATCCCATG
TTGTTTATGTGATTATTCTTCATAATACTATGAAGAATGGTATTTGTAGTTTCATGGCTATTGT
TTTATACCTTTAGACTGCTTTTGGTAATATGAACATTGTAGCAATATTAAAGGCTCTGTTTCTT
GAGCTTGGGATATATCTCTACCTTTTTGTATATCGTGAACTTTTTGTCACTGTCAGCATTTTGA
TAGCAGATATATTTTACTTTCTTAGTTTAATTTATTCCTAGTTTTTCCTCCTGTAAAACATTGA
ATATTGGGGATGATATGGCCTCTAAAAAATGTTTTTTATGTGTGTGTGCTTGAATGTTTGTGCA
AGTACCTGAGGATGTTAGAAAGAGATGCTGGATCCTCTGGAACTAGAGTTATAGTGGTTGTGAG
CTGCCTGGTGTGGGTACAGGTCCTCTGCAAAGAGCAGCAAGTGCCTTTAACTACTGAGCCATTT
CTTTTAGCCATATGAGACTGCTTTTTAAAATTTGTTTTTCAGCAAGAGTTTGTTAGTAATTGGG
GGTTGGGGGGTATTGTCTCTTTGTCTCTTTGTCCCCCCTCTTTTCTCTCTCTTTCTCATTGTGT
GTGTGTGTGTTGATTTTTATATCCTGTATCTTTACTAAGTCTATCAGTTCCATTGGGGTTTTGG
GTCTTCAGGGAATTCTCTATATAAGAGCATTTAATCTGACAGCAGTGTTAGCTGGCTTATGAGG
TTTTTCTACTTGGGATGACATTTATCTCTTTGTCTTACTTTATTACCATAGCAAAATTATGTTA
GATATGAGTGTTGATCTTTGTATTTTTCCATCTATCAGAGGAAACACTCAACCTTTTCCCTTTA
AAGCTTAAAGTTGGTTGTGCTTTTTCATACATAGCCTTTGTTATGTTGACATATTTTCCTGCTA
TGCCTACCATACTGAGGGTTTTTATCATGAAAGAATGTTGGATTTTATTGGGTGCATTTATTAA
GAGGATCATACTGTTTTGCCTTTCACTTTGTTAATGTAATGCTGCCTTAGTTACTTTCTTATTG
CTATGATAGAATCCCTGAAATAAGAGGATAGATTATTTGAGCTTACGGTTTTAAATAATTTGGG
CCATAGCTGTTTGGCCTCACAAACTTGGGCAAAACATTATGATAATGGAAATGTGAAGCAGAGG
AGAGTTGTTTTATTTCATGACTAACCAAGAAACAAAATGTTTTAGGAAGTAGCCATAAATGCAT
ATTCACAAGGACCCGCTCCCCAGTGACCGGCTTCCTCCAGGTAGTCACTTCCTGGTTTCTACAA
CCTCCACAAATGGTGTAACCATGCAGTAGTGATCAGAGTTCAAATCATGAGTGTATGAAGGACA
TTACATATTCAAACCGTCCCAGAGGCACTACCTTTATTGACTTGTAAGAATGTTCTTGCATCTC
TGGGATAAACCCTACCCGATCACGATGTTTGATATTTTTGATGTGCTGTCAGAATCGGCTTGAC
AGGATTTTGTTGACAATTTTTATATATGTGTTCATCAGAAATACTGGTTTGTATACTACTTTTG
CGATATGTCTTTATGTAACTTGGTGTTTGATTAATTCTAGCCCCATAGAATAAATTTTGACATA
GTCTCTTTTTTCAGTCTTTTGGAATGGTTTGAGTAAGATTGGTTTTAATTTCAGGTGTTTTGTA
GATTTCTGCAATATCCTTTTCTGCCACTCCATAATTAGTCTCATTTATTGTACCTTAAGTTGCA
GCCCCTTGTGTTTTCCTTGATTGCCTGATAAAAGAATTCTCTTGTTCCCTTCCCCCTTCCCCCT
CCCTCATTCATGTATACCTTGGTTTATAGGAGGCAGGTGAACACATAGCTTTAACTTGTCATCT
GTTCTGTGTCTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTGGTTTTTCGAGACAGGGTTTCTCT
GTGTAGCTCTGGCTGTCCTGGAACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCT
CCCAGGTGCTGGGATTAAAAGCGTGTGCCACCACGCCCGGCTTGTTCTGTGTCTTTTATTGCAT
GTCTACTCTCCTTATTTGTAAGACAACTAAGAAACATTCTTTATTTCTCAGTTTAGAAGGGGAG
ATAGCTTGGTGCCTAATCAGTGTCCAGACTGCCACCCTGATGTGTGTATAATTGGAAACCTAGC
AGATTGGAAACATACTGGAGGAAGTAAGTCAGCTGTTAGGAGACTGAGTACCTGAGAGAGTATA
TAGCAGTGTTTCCCTCCTTGTGTTTGCAAAGCCCCAGTGACAGCAAACACATAATTTCTGTGTT
CAGTACACTATTCTGAGACATTTTACTGCTGGTCCTGTTTTGCCCTCCTTCCACTTAGCCTAGT
AAGACACACTAGGGATAAAAAGAGTTGTAAGTAAACGGAAGATGAACCAACTGACTAAATCAAG
TATTGTTCAGTGGTTTCTTGTACTTGTGCTAATTTTTATTTTTAGTGTGATTTATGTATTTAAA
ATACACAATTGAGGTCTCAGTATGGGTAAGTTTTTTTTTCTGTAACACATGGATCCTAATTGTA
AAAATGGTGATACTGAACAAGAAAGAAAAGAATTAGCTGACTCAAAATATCAGCTAAATGATTC
AGTTAAAAAAATTACTGACTATAACAACCTCAATCATAAGAGTAATTTAGAAAAA

hide sequence

RefSeq Acc Id:

XM_030250983 ⟹ XP_030106843

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	146,866,428 - 146,919,922 (+)	NCBI
GRCm38	2	147,029,338 - 147,077,994 (+)	NCBI

Sequence:

show sequence

CCAAAAGAATGCAACGGTGTAAAGATTCCAGTTGATGCCAGTAAACCTAATCCAAATGATGTGG
AGTTTGATAATCTGTATTTGGATATGAATGGGATCATCCACCCCTGCACTCATCCTGAAGACAA
ACCAGCACCAAAAAATGAAGATGAAATGATGGTTGCAATTTTTGAGTACATTGACAGACTTTTC
AATATTGTAAGACCAAGAAGACTTCTCTACATGGCAATAGATGGGGTGGCACCACGTGCAAAAA
TGAATCAGCAGCGTTCAAGGAGGTTCAGAGCATCAAAGGAAGGAATGGAAGCAGCAGTTGAGAA
GCAGCGAGTCAGAGAGGAAATACTTGCAAAAGGTGGCTTTCTTCCTCCAGAAGAAATAAAAGAA
AGATTTGACAGCAACTGTATTACCCCAGGAACTGAGTTCATGGACAATCTTGCTAAATGCCTTC
GCTATTACATAGCTGATCGTTTAAATAATGACCCTGGGTGGAAAAATTTGACAGTTATATTATC
TGATGCTAGTGCACCTGGTGAAGGAGAACACAAAATCATGGATTACATTAGAAGACAAAGAGCC
CAGCCTAACCATGACCCAAATACTCATCATTGTTTGTGTGGAGCTGATGCTGATCTAATTATGC
TTGGTCTTGCTACACATGAACCTAACTTCACCATAATCAGAGAAGAATTCAAACCAAATAAACC
TAAACCATGTGCTCTTTGTAATCAGTTTGGACACGAGGTCAAGGATTGTGAAGGTTTGCCAAGA
GAAAAGAAGGGAAAGCATGATGAACTTGCAGATAGTCTTCCTTGTGCAGAAGGGGAGTTTATCT
TCCTTCGGCTGAATGTCCTTCGAGAGTATCTGGAAAGAGAACTCACCATGGCCAGCTTACCATT
CCCATTTGATGTGGAGAGGAGCATTGATGACTGGGTGTTCATGTGCTTCTTTGTGGGGAATGAT
TTCCTTCCTCACTTGCCATCACTAGAGATTAGGGAAGGTGCAATTGATCGTTTGGTTAACATAT
ACAAAAACGTGGTACACAAAACTGGGGGTTACCTTACAGAAAGTGGTTATGTCAATCTGCAAAG
AGTACAGATGATCATGTTAGCAGTTGGTGAAGTTGAGGATAGCATTTTTAAAAAGAGAAAAGAT
GATGAGAATATGTGGATTTTATACTTTTAGGACAGTTTTAGAAGACGACAGAAAGAAAAAAGAA
AGAGGATGAAGAGAGATCAACCAGCTTTTACTCCTAGTGGAATATTAACACCTCATGCCTTGGG
TTCAAGAAATTCACCAGGTTGTCAAGTAGCCAGTAATCCAAGACAAGCAGCCTATGAAATGAGG
ATGCAGAGAAACTCTAGTCCTTCAATATCTCCTAATACAAGTTTTGCATCTGATGGCTCCCCAT
CTCCACTAGGAGGAATTAAGAGAAAAGCAGAAGACAGTGACAGTGAGCCAGAGCCAGAGGATAA
CGTCAGGTTATGGGAAGCTGGTTGGAAGCAACGATACTACAAGAACAAATTTGATGTAGATGCA
GCTGATGAGAAATTCCGACGTAAGGTTGTTCAGTCCTACGTTGAAGGACTGTGCTGGGTTCTTC
GCTATTATTACCAGGGCTGTGCTTCCTGGAAGTGGTATTATCCATTCCATTATGCACCATTTGC
CTCAGACTTTGAAGGTATTGCAGACATGTCCTCTGAATTTGAAAAGGGCACAAAACCGTTTAAG
CCACTGGAACAACTAATGGGGGTTTTCCCAGCTGCAAGTGGTAACTTTCTACCTCCAACATGGC
GGAAGCTCATGAGTGACCCTGATTCCAGTATAATTGACTTCTATCCTGAAGATTTTGCTATTGA
TTTGAATGGGAAGAAATATGCATGGCAAGGTGTTGCTCTATTGCCATTTGTGGATGAGCGAAGG
CTGCGAGCGGCTCTAGAAGAGGTGTACCCAGACCTCACTCCAGAAGAGAACAGGAGAAATAGTC
TTGGAGGTGATGTTTTGTTTGTGGGAAAACTTCATCCACTACGCGACTTCATTTTAGAGCTGTA
TCAGACGGGTTCCACAGAGCCAGTTGATGTGCCACCTGAATTGTGTCACGGGATTCAAGGGACG
TTTTCTTTGGATGAAGAAGCCATTCTTCCAGACCAAACAGTATGTTCCCCTGTGCCCATGTTGC
GGGACCTGACACAGAACACTGCAGTCAGTATTAATTTTAAAGATCCACAGTTTGCTGAAGATTA
TGTTTTTAAAGCTGCAATGCTTCCAGGAGCAAGAAAGCCAGCAACAGTTCTGAAACCTGGTGAC
TGGGAAAAATCCAGCAATGGGCGGCAATGGAAACCTCAGCTTGGCTTTAACCGGGACCGGCGGC
CTGTTCACCTGGACCAGGCAGCCTTTAGAACTTTAGGCCATGTTACACCAAGAGGCTCGGGGAC
GAGTGTTTATACGAACACTGCACTACCACCTGCCAATTACCAGGGGAACAATTACAGGCCACTG
CTGAGAGGTCAAGCTCAGATCCCAAAACTTATGTCAAATATGAGGCCCCAAGATTCCTGGCGAG
GCCCTCCTCCTCTTTTCCAGCAGCATAGATTTGAGAGAAGTGTTGGAGCTGAACCTCTACTGCC
ATGGAACCGGATGATCCAAAACCAAAATGCAGCCTTTCAGCCAAATCAGTACCAGATGCTAGGA
GGACCTGGAGGCTATCCACCCAGACGTGACGATCACCGAGGAGGGAGACAGGGATATCCCAGAG
AAGGACGGAAATACCCTTTGCCACCACCCTCGGGAAGATACAGTTGGAATTAGGCTTTTGTAAA
GCTTTCCACATTCCTTTTACCAGTCTACATTTTTATGCTATTTGTGGAAAGGTTTCTTTCTCAA
GTAGTAGTTTTTAATAAAACTACAGTACTTTGTGTATTTCTTTTATCTGTGTGTATATTTTTAC
TGATCTGATCTCACTGTTTCATGCTGCTTTCCAGAGATGTGTATGGCATAATACAGTGGGTCTG
AATTTATTATTGCTTGTAAACACATTTGACGAAATTAGGAGTCCTGGGTTTTCATTATGGTTAA
AATTCAAAACAGCTCTATGCTGATTTTAATGCACATTAATAATTAGGTATGGACATTGAGCTGC
ACATTCTGCAGACGAGCATATATTGCTCAACATTTCTTTGAAAACATTTCATTAAAGTACTTGA
CTTACAGAAATTTGTGGACTTTAGTAAAAAAATAAAAATAAAGCTAAACTTTAAAAATG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001343331	(Get FASTA)	NCBI Sequence Viewer
	NP_001343332	(Get FASTA)	NCBI Sequence Viewer
	NP_036047	(Get FASTA)	NCBI Sequence Viewer
	XP_011237821	(Get FASTA)	NCBI Sequence Viewer
	XP_030106843	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH04028	(Get FASTA)	NCBI Sequence Viewer
	AAH54743	(Get FASTA)	NCBI Sequence Viewer
	BAA07524	(Get FASTA)	NCBI Sequence Viewer
	BAB23573	(Get FASTA)	NCBI Sequence Viewer
	BAC27318	(Get FASTA)	NCBI Sequence Viewer
	BAC35458	(Get FASTA)	NCBI Sequence Viewer
	BAE21766	(Get FASTA)	NCBI Sequence Viewer
	BAE39193	(Get FASTA)	NCBI Sequence Viewer
	BAE40020	(Get FASTA)	NCBI Sequence Viewer
	EDL28513	(Get FASTA)	NCBI Sequence Viewer
	EDL28514	(Get FASTA)	NCBI Sequence Viewer
	EDL28515	(Get FASTA)	NCBI Sequence Viewer
	EDL28516	(Get FASTA)	NCBI Sequence Viewer
	EDL28517	(Get FASTA)	NCBI Sequence Viewer
	EDL28518	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000028921
	ENSMUSP00000028921.6
GenBank Protein	Q9DBR1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_036047 ⟸ NM_011917
- Peptide Label:	isoform 1
- UniProtKB:	Q61489 (UniProtKB/Swiss-Prot), Q3UZT9 (UniProtKB/Swiss-Prot), Q3TKF2 (UniProtKB/Swiss-Prot), Q3TI26 (UniProtKB/Swiss-Prot), Q99KS7 (UniProtKB/Swiss-Prot), Q9DBR1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTH PEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEA AVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLT VILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFK PNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMA SLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV NLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNS PGCQVASNPRQAAYEMRMQRNSSPSISPNTSFASDGSPSPLGGIKRKAEDSDSEPEPEDNVRLW EAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE GIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSSIIDFYPEDFAIDLNGK KYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFVGKLHPLRDFILELYQTGS TEPVDVPPELCHGIQGTFSLDEEAILPDQTVCSPVPMLRDLTQNTAVSINFKDPQFAEDYVFKA AMLPGARKPATVLKPGDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVTPRGSGTSVYT NTALPPANYQGNNYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQHRFERSVGAEPLLPWNRM IQNQNAAFQPNQYQMLGGPGGYPPRRDDHRGGRQGYPREGRKYPLPPPSGRYSWN hide sequence

RefSeq Acc Id:

XP_011237821 ⟸ XM_011239519

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTH
PEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEA
AVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLT
VILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFK
PNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMA
SLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV
NLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNS
PGCQVASNPRQAAYEMRMQRNSSPSISPNTSFASDGSPSPLGGIKRKAEDSDSEPEPEDNVRLW
EAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE
GIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSSIIDFYPEDFAIDLNGK
KYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFVGKLHPLRDFILELYQTGS
TEPVDVPPELCHGIQGTFSLDEEAILPDQTVCSPVPMLRDLTQNTAVREKYRLESHAHKPITNN
LALSNLLWTLH

hide sequence

RefSeq Acc Id:	NP_001343332 ⟸ NM_001356403
- Peptide Label:	isoform 3

RefSeq Acc Id:	NP_001343331 ⟸ NM_001356402
- Peptide Label:	isoform 2

RefSeq Acc Id:	XP_030106843 ⟸ XM_030250983
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSMUSP00000028921 ⟸ ENSMUST00000028921

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9DBR1-F1-model_v2	AlphaFold	Q9DBR1	1-951	view protein structure

Promoters

RGD ID:

6833089

Promoter ID:

MM_KWN:32106

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000037296, UC008MSP.1, UC008MSQ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	146,837,806 - 146,838,987 (+)	MPROMDB

RGD ID:

6833092

Promoter ID:

MM_KWN:32108

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2

Transcripts:

OTTMUST00000037298

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	146,867,726 - 146,868,226 (+)	MPROMDB

RGD ID:

6879030

Promoter ID:

EPDNEW_M2966

Type:

initiation region

Name:

Xrn2_1

Description:

Mus musculus 5'-3' exoribonuclease 2 , transcript variant 3,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2967

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	147,013,035 - 147,013,095	EPDNEW

RGD ID:

6879032

Promoter ID:

EPDNEW_M2967

Type:

single initiation site

Name:

Xrn2_2

Description:

Mus musculus 5'-3' exoribonuclease 2 , transcript variant 3,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2966

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	147,014,763 - 147,014,823	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:894687	AgrOrtholog
Ensembl Genes	ENSMUSG00000027433	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000028921	ENTREZGENE
	ENSMUST00000028921.6	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.1050	UniProtKB/Swiss-Prot
	3.40.50.12390	UniProtKB/Swiss-Prot
InterPro	5_3_exoribonuclease	UniProtKB/Swiss-Prot
	Put_53exo	UniProtKB/Swiss-Prot
	Xrn1_helical	UniProtKB/Swiss-Prot
	Xrn2/3/4	UniProtKB/Swiss-Prot
KEGG Report	mmu:24128	UniProtKB/Swiss-Prot
MGD	MGI:894687	ENTREZGENE
NCBI Gene	24128	ENTREZGENE
PANTHER	5'-3' EXORIBONUCLEASE 2	UniProtKB/Swiss-Prot
	PTHR12341	UniProtKB/Swiss-Prot
Pfam	XRN_M	UniProtKB/Swiss-Prot
	XRN_N	UniProtKB/Swiss-Prot
PhenoGen	Xrn2	PhenoGen
PIRSF	Exonuclease_Xrn2	UniProtKB/Swiss-Prot
UniProt	Q3TI26	ENTREZGENE
	Q3TKF2	ENTREZGENE
	Q3UZT9	ENTREZGENE
	Q61489	ENTREZGENE
	Q99KS7	ENTREZGENE
	Q9DBR1	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q3TI26	UniProtKB/Swiss-Prot
	Q3TKF2	UniProtKB/Swiss-Prot
	Q3UZT9	UniProtKB/Swiss-Prot
	Q61489	UniProtKB/Swiss-Prot
	Q99KS7	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)