Rnf111 (ring finger 111) - Rat Genome Database

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Gene: Rnf111 (ring finger 111) Mus musculus
Analyze
Symbol: Rnf111
Name: ring finger 111
RGD ID: 1320806
MGI Page MGI
Description: Enables ubiquitin protein ligase activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within several processes, including cellular protein metabolic process; positive regulation of protein ubiquitination; and positive regulation of transforming growth factor beta receptor signaling pathway. Located in cytoplasm and nucleus. Part of protein-containing complex. Is expressed in several structures, including heart; nervous system; testis; and urinary system. Orthologous to human RNF111 (ring finger protein 111).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ar; ARK; Arkadia; E3 ubiquitin-protein ligase Arkadia; RING finger protein 111; RING-type E3 ubiquitin transferase Arkadia
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm6162  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,332,706 - 70,411,122 (-)NCBIGRCm39mm39
GRCm39 Ensembl970,332,706 - 70,411,007 (-)Ensembl
GRCm38970,425,424 - 70,503,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,425,424 - 70,503,725 (-)EnsemblGRCm38mm10GRCm38
MGSCv37970,273,236 - 70,351,532 (-)NCBIGRCm37mm9NCBIm37
MGSCv36970,224,593 - 70,302,889 (-)NCBImm8
Celera967,641,547 - 67,720,771 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA)
cytosol  (ISO)
nucleoplasm  (ISO,TAS)
nucleus  (IBA,IDA)
protein-containing complex  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:2176709   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11298452   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14657019  
PMID:15489334   PMID:15741177   PMID:16141072   PMID:16141073   PMID:16601693   PMID:17341133   PMID:17510063   PMID:17540781   PMID:17967808   PMID:18287559   PMID:18799693   PMID:18950738  
PMID:19032943   PMID:19959502   PMID:20368287   PMID:20507941   PMID:20965945   PMID:21795712   PMID:21873635   PMID:21998011   PMID:22988430   PMID:23530056   PMID:23537899   PMID:23751493  
PMID:24912682   PMID:25762727   PMID:27292644   PMID:28190767   PMID:34473197  


Genomics

Comparative Map Data
Rnf111
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,332,706 - 70,411,122 (-)NCBIGRCm39mm39
GRCm39 Ensembl970,332,706 - 70,411,007 (-)Ensembl
GRCm38970,425,424 - 70,503,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,425,424 - 70,503,725 (-)EnsemblGRCm38mm10GRCm38
MGSCv37970,273,236 - 70,351,532 (-)NCBIGRCm37mm9NCBIm37
MGSCv36970,224,593 - 70,302,889 (-)NCBImm8
Celera967,641,547 - 67,720,771 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.53NCBI
RNF111
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1558,865,175 - 59,097,419 (+)EnsemblGRCh38hg38GRCh38
GRCh381558,987,588 - 59,097,419 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371559,279,862 - 59,389,618 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361557,067,157 - 57,176,546 (+)NCBINCBI36hg18NCBI36
Build 341557,067,156 - 57,176,543NCBI
Celera1536,167,824 - 36,277,204 (+)NCBI
Cytogenetic Map15q22.1-q22.2NCBI
HuRef1536,102,268 - 36,211,882 (+)NCBIHuRef
CHM1_11559,397,853 - 59,507,605 (+)NCBICHM1_1
Rnf111
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2871,103,967 - 71,180,172 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl871,103,973 - 71,145,070 (-)Ensembl
Rnor_6.0876,864,343 - 76,940,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl876,864,344 - 76,940,196 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0876,142,443 - 76,218,335 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4874,909,360 - 74,983,363 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1874,928,412 - 75,002,379 (-)NCBI
Celera870,549,077 - 70,624,721 (+)NCBICelera
Cytogenetic Map8q24NCBI
Rnf111
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,587,270 - 15,624,576 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,590,053 - 15,651,344 (-)NCBIChiLan1.0ChiLan1.0
RNF111
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11556,212,580 - 56,374,485 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,265,379 - 56,374,484 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01537,957,390 - 38,068,006 (+)NCBIMhudiblu_PPA_v0panPan3
RNF111
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13023,934,156 - 24,027,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3023,976,311 - 24,027,759 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3023,907,947 - 24,003,371 (+)NCBI
ROS_Cfam_1.03024,102,577 - 24,198,087 (+)NCBI
ROS_Cfam_1.0 Ensembl3024,102,585 - 24,197,200 (+)Ensembl
UMICH_Zoey_3.13024,027,769 - 24,123,096 (+)NCBI
UNSW_CanFamBas_1.03024,110,994 - 24,206,320 (+)NCBI
UU_Cfam_GSD_1.03024,254,532 - 24,349,991 (+)NCBI
Rnf111
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,235,037 - 102,362,229 (+)NCBI
SpeTri2.0NW_00493647120,139,798 - 20,210,291 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF111
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,961,412 - 113,059,543 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,961,466 - 113,059,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,961,877 - 125,013,992 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF111
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12624,416,946 - 24,528,989 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2624,416,093 - 24,528,862 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048116,738,436 - 116,906,973 (+)NCBIVero_WHO_p1.0
Rnf111
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478112,912,205 - 13,042,683 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH143275  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38970,502,585 - 70,502,711UniSTSGRCm38
MGSCv37970,350,392 - 70,350,518UniSTSGRCm37
Celera967,719,511 - 67,719,637UniSTS
Cytogenetic Map9DUniSTS
cM Map939.0UniSTS
PMC291827P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3836,165,404 - 6,165,514UniSTSGRCm38
MGSCv3736,165,404 - 6,165,514UniSTSGRCm37
Celera36,231,473 - 6,231,583UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map9DUniSTS
cM Map939.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93791224471912244Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93819229172192291Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93819229172192291Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93819229172192291Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94357343177573577Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94357343177573577Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94452089278520980Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94892377482923895Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94892377482923895Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
14746993Manh66_mmandible shape 66 (mouse)94990676683906766Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95024403884244166Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95789776471574472Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95789776486239920Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96592377486695914Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
14700779Syncq8_msynovial calcification QTL 8 (mouse)96960700070785000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:953
Count of miRNA genes:307
Interacting mature miRNAs:366
Transcripts:ENSMUST00000034739, ENSMUST00000113595
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF330197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034739   ⟹   ENSMUSP00000034739
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,332,711 - 70,411,007 (-)Ensembl
GRCm38.p6 Ensembl970,425,429 - 70,503,725 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113595   ⟹   ENSMUSP00000109225
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,332,712 - 70,410,636 (-)Ensembl
GRCm38.p6 Ensembl970,425,430 - 70,503,354 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213208
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,332,706 - 70,361,240 (-)Ensembl
GRCm38.p6 Ensembl970,425,424 - 70,453,958 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213647   ⟹   ENSMUSP00000149501
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,332,712 - 70,410,660 (-)Ensembl
GRCm38.p6 Ensembl970,425,430 - 70,503,378 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213694
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,363,196 - 70,411,006 (-)Ensembl
GRCm38.p6 Ensembl970,455,914 - 70,503,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213996
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,334,319 - 70,337,433 (-)Ensembl
GRCm38.p6 Ensembl970,427,037 - 70,430,151 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215848   ⟹   ENSMUSP00000149445
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,332,711 - 70,410,636 (-)Ensembl
GRCm38.p6 Ensembl970,425,429 - 70,503,354 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215948
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl970,346,972 - 70,361,128 (-)Ensembl
GRCm38.p6 Ensembl970,439,690 - 70,453,846 (-)Ensembl
RefSeq Acc Id: NM_001357494   ⟹   NP_001344423
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,410,660 (-)NCBI
GRCm38970,425,424 - 70,503,378 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001374753   ⟹   NP_001361682
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,411,057 (-)NCBI
GRCm38970,425,424 - 70,503,775 (-)NCBI
Sequence:
RefSeq Acc Id: NM_033604   ⟹   NP_291082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,411,057 (-)NCBI
GRCm38970,425,424 - 70,503,775 (-)NCBI
MGSCv37970,273,236 - 70,351,532 (-)RGD
Celera967,641,547 - 67,720,771 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511576   ⟹   XP_006511639
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,410,672 (-)NCBI
GRCm38970,425,424 - 70,503,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511577   ⟹   XP_006511640
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,410,672 (-)NCBI
GRCm38970,425,424 - 70,503,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511578   ⟹   XP_006511641
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,410,672 (-)NCBI
GRCm38970,425,431 - 70,503,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511580   ⟹   XP_006511643
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,410,672 (-)NCBI
GRCm38970,425,424 - 70,503,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511581   ⟹   XP_006511644
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,713 - 70,410,666 (-)NCBI
GRCm38970,425,885 - 70,503,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511582   ⟹   XP_006511645
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,411,091 (-)NCBI
GRCm38970,425,424 - 70,503,809 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511583   ⟹   XP_006511646
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,411,078 (-)NCBI
GRCm38970,425,424 - 70,503,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511584   ⟹   XP_006511647
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,410,681 (-)NCBI
GRCm38970,425,424 - 70,503,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242841   ⟹   XP_011241143
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,410,672 (-)NCBI
GRCm38970,425,424 - 70,503,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313709   ⟹   XP_017169198
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,410,666 (-)NCBI
GRCm38970,425,885 - 70,503,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244746   ⟹   XP_030100606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,411,078 (-)NCBI
GRCm38970,425,424 - 70,503,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244747   ⟹   XP_030100607
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,411,122 (-)NCBI
GRCm38970,425,424 - 70,503,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244748   ⟹   XP_030100608
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,411,091 (-)NCBI
GRCm38970,425,431 - 70,503,809 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244750   ⟹   XP_030100610
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,333,167 - 70,411,122 (-)NCBI
GRCm38970,425,885 - 70,503,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244751   ⟹   XP_030100611
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,411,091 (-)NCBI
GRCm38970,425,424 - 70,503,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155421   ⟹   XP_036011314
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,706 - 70,410,688 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155422   ⟹   XP_036011315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39970,332,713 - 70,411,114 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001344423 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361682 (Get FASTA)   NCBI Sequence Viewer  
  NP_291082 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511639 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511640 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511641 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511643 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511644 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511645 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511646 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511647 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241143 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169198 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100606 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100607 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100608 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100610 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100611 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011314 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011315 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH54842 (Get FASTA)   NCBI Sequence Viewer  
  AAH69835 (Get FASTA)   NCBI Sequence Viewer  
  AAK38272 (Get FASTA)   NCBI Sequence Viewer  
  BAC29394 (Get FASTA)   NCBI Sequence Viewer  
  BAC33245 (Get FASTA)   NCBI Sequence Viewer  
  BAE23252 (Get FASTA)   NCBI Sequence Viewer  
  EDL26198 (Get FASTA)   NCBI Sequence Viewer  
  Q99ML9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_291082   ⟸   NM_033604
- Peptide Label: isoform 1
- UniProtKB: Q99ML9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511645   ⟸   XM_006511582
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006511646   ⟸   XM_006511583
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006511640   ⟸   XM_006511577
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006511639   ⟸   XM_006511576
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511644   ⟸   XM_006511581
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006511643   ⟸   XM_006511580
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006511641   ⟸   XM_006511578
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006511647   ⟸   XM_006511584
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011241143   ⟸   XM_011242841
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169198   ⟸   XM_017313709
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030100607   ⟸   XM_030244747
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030100606   ⟸   XM_030244746
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030100611   ⟸   XM_030244751
- Peptide Label: isoform X13
RefSeq Acc Id: NP_001344423   ⟸   NM_001357494
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030100608   ⟸   XM_030244748
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030100610   ⟸   XM_030244750
- Peptide Label: isoform X12
RefSeq Acc Id: NP_001361682   ⟸   NM_001374753
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000109225   ⟸   ENSMUST00000113595
RefSeq Acc Id: ENSMUSP00000034739   ⟸   ENSMUST00000034739
RefSeq Acc Id: ENSMUSP00000149501   ⟸   ENSMUST00000213647
RefSeq Acc Id: ENSMUSP00000149445   ⟸   ENSMUST00000215848
RefSeq Acc Id: XP_036011314   ⟸   XM_036155421
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036011315   ⟸   XM_036155422
- Peptide Label: isoform X14
Protein Domains
RING-type

Promoters
RGD ID:6845038
Promoter ID:MM_KWN:57974
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:UC009QOA.1,   UC009QOF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36970,301,416 - 70,302,367 (-)MPROMDB
RGD ID:6845040
Promoter ID:MM_KWN:57976
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113595,   NM_033604,   UC009QOB.1,   UC009QOC.1,   UC009QOD.1,   UC009QOG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36970,351,399 - 70,351,899 (-)MPROMDB
RGD ID:8670094
Promoter ID:EPDNEW_M13078
Type:multiple initiation site
Name:Rnf111_2
Description:Mus musculus ring finger 111 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13079  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38970,503,358 - 70,503,418EPDNEW
RGD ID:8670096
Promoter ID:EPDNEW_M13079
Type:initiation region
Name:Rnf111_1
Description:Mus musculus ring finger 111 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13078  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38970,503,740 - 70,503,800EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1934919 AgrOrtholog
Ensembl Genes ENSMUSG00000032217 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034739 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109225 UniProtKB/Swiss-Prot
  ENSMUSP00000149445 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000149501 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034739 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113595 UniProtKB/Swiss-Prot
  ENSMUST00000213647 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000215848 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RNF111_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:93836 UniProtKB/Swiss-Prot
MGD MGI:1934919 ENTREZGENE
NCBI Gene 93836 ENTREZGENE
Pfam RNF111_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf111 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SRK3_MOUSE UniProtKB/TrEMBL
  Q99ML9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UVL7 UniProtKB/Swiss-Prot
  Q6NSW2 UniProtKB/Swiss-Prot
  Q7TMR3 UniProtKB/Swiss-Prot
  Q8C881 UniProtKB/Swiss-Prot
  Q8CBC0 UniProtKB/Swiss-Prot