Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B) - Rat Genome Database
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Gene: Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B) Mus musculus
Analyze
Symbol: Sema3b
Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
RGD ID: 1320779
MGI Page MGI
Description: Predicted to have chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to localize to extracellular space and integral component of plasma membrane. Is expressed in several structures, including central nervous system; genitourinary system; peripheral nervous system; skeletal muscle; and tooth. Orthologous to human SEMA3B (semaphorin 3B).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AW208495; LUCA; LUCA-1; Se; sem; SemA; sema A; sema5; Semaa; semaphorin-3B; semaphorin-A; semaV
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,474,873 - 107,486,440 (-)NCBIGRCm39mm39
GRCm389107,597,674 - 107,609,241 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,597,674 - 107,609,229 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,500,446 - 107,511,572 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,456,456 - 107,463,503 (-)NCBImm8
Celera9107,206,897 - 107,218,025 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7748561   PMID:8633026   PMID:8812066   PMID:8817451   PMID:9753685   PMID:10349636   PMID:10985345   PMID:11042159   PMID:11074448   PMID:11076861   PMID:11231073   PMID:11487633  
PMID:11717452   PMID:12435358   PMID:12477932   PMID:14586460   PMID:14610273   PMID:14681479   PMID:15051154   PMID:15782199   PMID:15789413   PMID:15869472   PMID:16141072   PMID:16141073  
PMID:16202709   PMID:16284245   PMID:16602821   PMID:17145500   PMID:17626059   PMID:17942483   PMID:17971221   PMID:18287559   PMID:18356290   PMID:18489001   PMID:18617019   PMID:19812329  
PMID:20006658   PMID:20159958   PMID:21386911   PMID:21658587   PMID:21713436   PMID:21779340   PMID:21873635   PMID:22076636   PMID:22632726   PMID:22936999   PMID:22955271   PMID:22998873  
PMID:23341629   PMID:23534961   PMID:23902858   PMID:23991118   PMID:24952961   PMID:25485759   PMID:25721514   PMID:25826454   PMID:26302206   PMID:26319580   PMID:26633812   PMID:26723579  
PMID:26830346   PMID:29031500   PMID:29972687   PMID:30628891   PMID:31182634  


Genomics

Comparative Map Data
Sema3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,474,873 - 107,486,440 (-)NCBIGRCm39mm39
GRCm389107,597,674 - 107,609,241 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,597,674 - 107,609,229 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,500,446 - 107,511,572 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,456,456 - 107,463,503 (-)NCBImm8
Celera9107,206,897 - 107,218,025 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.31NCBI
SEMA3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,267,558 - 50,277,546 (+)EnsemblGRCh38hg38GRCh38
GRCh38350,267,652 - 50,277,546 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,305,040 - 50,314,573 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,280,044 - 50,289,577 (+)NCBINCBI36hg18NCBI36
Build 34350,280,043 - 50,289,574NCBI
Celera350,277,865 - 50,287,398 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef350,360,724 - 50,370,309 (+)NCBIHuRef
CHM1_1350,257,259 - 50,266,884 (+)NCBICHM1_1
Sema3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08116,353,791 - 116,362,655 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,354,073 - 116,361,343 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,710,050 - 115,719,431 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,845,709 - 112,852,565 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,864,748 - 112,872,108 (-)NCBI
Celera8107,578,526 - 107,585,547 (-)NCBICelera
Cytogenetic Map8q32NCBI
Sema3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,085,319 - 2,093,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,083,457 - 2,093,327 (+)NCBIChiLan1.0ChiLan1.0
SEMA3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,422,950 - 51,439,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,430,287 - 51,439,886 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,196,147 - 50,205,744 (+)NCBIMhudiblu_PPA_v0panPan3
SEMA3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,059,245 - 39,065,661 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,058,708 - 39,067,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Sema3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,806,535 - 1,818,352 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,740,802 - 32,749,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,737,100 - 32,749,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,919,463 - 35,927,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA3B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2211,656,918 - 11,665,418 (+)Ensembl
ChlSab1.12211,652,766 - 11,664,902 (+)NCBI
Sema3b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247304,131,329 - 4,142,126 (+)NCBI

Position Markers
X85990  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,598,444 - 107,598,598UniSTSGRCm38
MGSCv379107,500,775 - 107,500,929UniSTSGRCm37
Celera9107,207,226 - 107,207,380UniSTS
Cytogenetic Map9F1UniSTS
cM Map960.3UniSTS
Whitehead_YAC9 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1553
Count of miRNA genes:450
Interacting mature miRNAs:574
Transcripts:ENSMUST00000073448, ENSMUST00000102529, ENSMUST00000102530, ENSMUST00000102531, ENSMUST00000102532, ENSMUST00000123926
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_111986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB116052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB787270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX515696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY138852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY341101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN538654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN539668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X85990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000073448   ⟹   ENSMUSP00000073152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,598,354 - 107,606,656 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102529   ⟹   ENSMUSP00000099588
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,598,355 - 107,605,402 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102530   ⟹   ENSMUSP00000099589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,598,353 - 107,609,199 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102531   ⟹   ENSMUSP00000099590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,598,355 - 107,609,193 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102532   ⟹   ENSMUSP00000099591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,598,217 - 107,609,229 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123926   ⟹   ENSMUSP00000137952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,597,674 - 107,605,521 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193180   ⟹   ENSMUSP00000141726
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,603,304 - 107,606,916 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193234
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,601,615 - 107,602,166 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,605,091 - 107,607,185 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194433   ⟹   ENSMUSP00000141403
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,603,149 - 107,605,269 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194606   ⟹   ENSMUSP00000141928
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,604,166 - 107,606,681 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195057   ⟹   ENSMUSP00000141390
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,605,047 - 107,609,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195472
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,599,803 - 107,601,306 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195662   ⟹   ENSMUSP00000141614
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,603,336 - 107,606,683 (-)Ensembl
RefSeq Acc Id: NM_001042779   ⟹   NP_001036244
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,486,440 (-)NCBI
GRCm389107,597,674 - 107,609,241 (-)NCBI
MGSCv379107,500,446 - 107,511,572 (-)RGD
Celera9107,206,456 - 107,218,025 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291537   ⟹   NP_001278466
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,484,291 (-)NCBI
GRCm389107,597,674 - 107,607,092 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291538   ⟹   NP_001278467
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,484,291 (-)NCBI
GRCm389107,597,674 - 107,607,092 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291539   ⟹   NP_001278468
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,486,440 (-)NCBI
GRCm389107,597,674 - 107,609,241 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009153   ⟹   NP_033179
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,482,601 (-)NCBI
GRCm389107,597,674 - 107,605,402 (-)NCBI
MGSCv379107,500,446 - 107,511,572 (-)RGD
Celera9107,206,456 - 107,218,025 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_111986
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,482,786 (-)NCBI
GRCm389107,597,674 - 107,605,587 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511664   ⟹   XP_006511727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511665   ⟹   XP_006511728
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511666   ⟹   XP_006511729
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511671   ⟹   XP_006511734
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511673   ⟹   XP_006511736
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,480,552 (-)NCBI
GRCm389107,598,216 - 107,603,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242862   ⟹   XP_011241164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242863   ⟹   XP_011241165
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242864   ⟹   XP_011241166
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242865   ⟹   XP_011241167
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242867   ⟹   XP_011241169
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,483,907 (-)NCBI
GRCm389107,598,216 - 107,606,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313225   ⟹   XP_017168714
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154742   ⟹   XP_036010635
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
RefSeq Acc Id: XM_036154743   ⟹   XP_036010636
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001036244 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278466 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278467 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278468 (Get FASTA)   NCBI Sequence Viewer  
  NP_033179 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511727 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511728 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511729 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511734 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511736 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241164 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241165 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241166 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241167 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241169 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168714 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010635 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010636 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH90669 (Get FASTA)   NCBI Sequence Viewer  
  AAI50759 (Get FASTA)   NCBI Sequence Viewer  
  CAA59982 (Get FASTA)   NCBI Sequence Viewer  
  EDL21207 (Get FASTA)   NCBI Sequence Viewer  
  EDL21208 (Get FASTA)   NCBI Sequence Viewer  
  EDL21209 (Get FASTA)   NCBI Sequence Viewer  
  EDL21210 (Get FASTA)   NCBI Sequence Viewer  
  EDL21211 (Get FASTA)   NCBI Sequence Viewer  
  EDL21212 (Get FASTA)   NCBI Sequence Viewer  
  Q62177 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001036244   ⟸   NM_001042779
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_033179   ⟸   NM_009153
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511728   ⟸   XM_006511665
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511729   ⟸   XM_006511666
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511734   ⟸   XM_006511671
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511727   ⟸   XM_006511664
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511736   ⟸   XM_006511673
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001278468   ⟸   NM_001291539
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278467   ⟸   NM_001291538
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278466   ⟸   NM_001291537
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241167   ⟸   XM_011242865
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241166   ⟸   XM_011242864
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241164   ⟸   XM_011242862
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241165   ⟸   XM_011242863
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241169   ⟸   XM_011242867
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168714   ⟸   XM_017313225
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000073152   ⟸   ENSMUST00000073448
RefSeq Acc Id: ENSMUSP00000141403   ⟸   ENSMUST00000194433
RefSeq Acc Id: ENSMUSP00000141726   ⟸   ENSMUST00000193180
RefSeq Acc Id: ENSMUSP00000137952   ⟸   ENSMUST00000123926
RefSeq Acc Id: ENSMUSP00000099591   ⟸   ENSMUST00000102532
RefSeq Acc Id: ENSMUSP00000099590   ⟸   ENSMUST00000102531
RefSeq Acc Id: ENSMUSP00000099589   ⟸   ENSMUST00000102530
RefSeq Acc Id: ENSMUSP00000099588   ⟸   ENSMUST00000102529
RefSeq Acc Id: ENSMUSP00000141614   ⟸   ENSMUST00000195662
RefSeq Acc Id: ENSMUSP00000141390   ⟸   ENSMUST00000195057
RefSeq Acc Id: ENSMUSP00000141928   ⟸   ENSMUST00000194606
RefSeq Acc Id: XP_036010635   ⟸   XM_036154742
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036010636   ⟸   XM_036154743
- Peptide Label: isoform X1
Protein Domains
Ig-like   Ig-like C2-type   Sema

Promoters
RGD ID:6845131
Promoter ID:MM_KWN:58731
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:NM_009153,   UC009RMG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,507,731 - 107,508,231 (-)MPROMDB
RGD ID:6845132
Promoter ID:MM_KWN:58732
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:UC009RMH.1,   UC009RMI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,509,111 - 107,510,052 (-)MPROMDB
RGD ID:6845130
Promoter ID:MM_KWN:58733
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000073448,   ENSMUST00000102531,   NM_001042779
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,510,931 - 107,511,431 (-)MPROMDB
RGD ID:8670814
Promoter ID:EPDNEW_M13437
Type:initiation region
Name:Sema3b_2
Description:Mus musculus sema domain, immunoglobulin domain , short basicdomain, secreted, 3B , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13438  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,605,157 - 107,605,217EPDNEW
RGD ID:8670816
Promoter ID:EPDNEW_M13438
Type:initiation region
Name:Sema3b_1
Description:Mus musculus sema domain, immunoglobulin domain , short basicdomain, secreted, 3B , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13437  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,609,188 - 107,609,248EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107561 AgrOrtholog
Ensembl Genes ENSMUSG00000057969 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000073152 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000099588 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000099589 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000099590 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000099591 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000137952 UniProtKB/TrEMBL
  ENSMUSP00000141390 UniProtKB/TrEMBL
  ENSMUSP00000141403 UniProtKB/TrEMBL
  ENSMUSP00000141614 UniProtKB/TrEMBL
  ENSMUSP00000141726 UniProtKB/TrEMBL
  ENSMUSP00000141928 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073448 UniProtKB/TrEMBL
  ENSMUST00000102529 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000102530 UniProtKB/TrEMBL
  ENSMUST00000102531 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000102532 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000123926 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000193180 UniProtKB/TrEMBL
  ENSMUST00000194433 UniProtKB/TrEMBL
  ENSMUST00000194606 UniProtKB/TrEMBL
  ENSMUST00000195057 UniProtKB/TrEMBL
  ENSMUST00000195662 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semaphorin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20347 UniProtKB/TrEMBL
MGD MGI:107561 ENTREZGENE
NCBI Gene 20347 ENTREZGENE
PANTHER PTHR11036 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sema3b PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.4083 ENTREZGENE
UniProt A0A0A6YW56_MOUSE UniProtKB/TrEMBL
  A0A0A6YWM9_MOUSE UniProtKB/TrEMBL
  A0A0A6YWW1_MOUSE UniProtKB/TrEMBL
  A0A0A6YXC1_MOUSE UniProtKB/TrEMBL
  A0A0G2JDD7_MOUSE UniProtKB/TrEMBL
  M0QWQ7_MOUSE UniProtKB/TrEMBL
  M9MMK0 ENTREZGENE, UniProtKB/TrEMBL
  Q0VGP2 ENTREZGENE, UniProtKB/TrEMBL
  Q62177 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9Q9Q1 UniProtKB/Swiss-Prot