CD7 (CD7 molecule) - Rat Genome Database

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Gene: CD7 (CD7 molecule) Homo sapiens
Analyze
Symbol: CD7
Name: CD7 molecule
RGD ID: 1320672
HGNC Page HGNC:1695
Description: Predicted to enable signaling receptor activity. Predicted to be involved in T cell activation and immune response. Predicted to act upstream of or within homeostasis of number of cells within a tissue. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CD7 antigen (p41); GP40; LEU-9; p41 protein; T-cell antigen CD7; T-cell leukemia antigen; T-cell surface antigen Leu-9; Tp40; TP41
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,314,873 - 82,317,608 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,314,868 - 82,317,608 (-)EnsemblGRCh38hg38GRCh38
GRCh371780,272,749 - 80,275,484 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,866,035 - 77,868,769 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,866,034 - 77,868,741NCBI
Celera1776,866,247 - 76,868,981 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,671,526 - 75,674,260 (-)NCBIHuRef
CHM1_11780,358,937 - 80,361,671 (-)NCBICHM1_1
T2T-CHM13v2.01783,183,628 - 83,186,371 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA,TAS)
plasma membrane  (TAS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1695199   PMID:1703303   PMID:1711009   PMID:2479685   PMID:3258561   PMID:3501369   PMID:8125298   PMID:8662072   PMID:8666891   PMID:8871597   PMID:8918688   PMID:9480746  
PMID:9852078   PMID:10490978   PMID:10652336   PMID:11423532   PMID:11485208   PMID:12393702   PMID:12477932   PMID:12594831   PMID:15489334   PMID:16332967   PMID:16837044   PMID:16990185  
PMID:17287851   PMID:17959857   PMID:18343790   PMID:18956470   PMID:19207946   PMID:19683346   PMID:19937140   PMID:20046078   PMID:20175919   PMID:20398252   PMID:21988832   PMID:23376485  
PMID:24157461   PMID:24211252   PMID:24727323   PMID:24920488   PMID:25275127   PMID:25679063   PMID:28514442   PMID:29463785   PMID:32296183   PMID:32460405   PMID:33333695   PMID:33961781  
PMID:34019867   PMID:34034609   PMID:34176091   PMID:35332132   PMID:37314354   PMID:38123919  


Genomics

Comparative Map Data
CD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,314,873 - 82,317,608 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,314,868 - 82,317,608 (-)EnsemblGRCh38hg38GRCh38
GRCh371780,272,749 - 80,275,484 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,866,035 - 77,868,769 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,866,034 - 77,868,741NCBI
Celera1776,866,247 - 76,868,981 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,671,526 - 75,674,260 (-)NCBIHuRef
CHM1_11780,358,937 - 80,361,671 (-)NCBICHM1_1
T2T-CHM13v2.01783,183,628 - 83,186,371 (-)NCBIT2T-CHM13v2.0
Cd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,927,573 - 120,930,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,927,573 - 120,930,244 (-)EnsemblGRCm39 Ensembl
GRCm3811121,036,747 - 121,039,478 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,036,747 - 121,039,418 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,898,065 - 120,900,732 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,852,841 - 120,855,508 (-)NCBIMGSCv36mm8
Celera11132,774,570 - 132,777,237 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.85NCBI
Cd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,802,373 - 106,805,269 (-)NCBIGRCr8
mRatBN7.210106,304,046 - 106,306,963 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,304,056 - 106,306,967 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,408,009 - 111,410,884 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,871,055 - 110,873,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,224,502 - 106,227,383 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,229,931 - 110,232,812 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,229,922 - 110,232,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,817,145 - 109,820,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,250,174 - 110,253,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,264,677 - 110,267,530 (-)NCBI
Celera10104,842,923 - 104,845,804 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Cd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955506863,188 - 865,857 (+)NCBIChiLan1.0ChiLan1.0
CD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,854,344 - 98,857,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,755,991 - 103,759,691 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,724,313 - 76,727,998 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,535,101 - 82,537,956 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,535,558 - 82,537,847 (-)Ensemblpanpan1.1panPan2
CD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,826 - 48,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl945,634 - 48,749 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9647,579 - 650,430 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09638,953 - 641,804 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9638,289 - 641,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19633,434 - 636,285 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09793,930 - 796,781 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09869,018 - 871,869 (+)NCBIUU_Cfam_GSD_1.0
Cd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602632,473 - 634,782 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365945,777,361 - 5,783,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.112740,345 - 744,876 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103243765
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,234,604 - 74,237,479 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,234,611 - 74,237,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,874,429 - 45,877,444 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480111,108,032 - 11,112,345 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD7
14 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q25.3(chr17:78901959-83086677)x3 copy number gain See cases [RCV000050934] Chr17:78901959..83086677 [GRCh38]
Chr17:76898041..81044553 [GRCh37]
Chr17:74409636..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:78092236-83086677)x3 copy number gain See cases [RCV000050685] Chr17:78092236..83086677 [GRCh38]
Chr17:76088317..81044553 [GRCh37]
Chr17:73599912..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69209079-83086677)x3 copy number gain See cases [RCV000052486] Chr17:69209079..83086677 [GRCh38]
Chr17:67205220..81044553 [GRCh37]
Chr17:64716815..78637842 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:78918650-83021095)x3 copy number gain See cases [RCV000052497] Chr17:78918650..83021095 [GRCh38]
Chr17:76914732..80978971 [GRCh37]
Chr17:74426327..78572260 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:80328106-83086677)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053454]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053454]|See cases [RCV000053454] Chr17:80328106..83086677 [GRCh38]
Chr17:78301906..81044553 [GRCh37]
Chr17:75916501..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:81885863-82358856)x3 copy number gain See cases [RCV000054049] Chr17:81885863..82358856 [GRCh38]
Chr17:79843739..80316732 [GRCh37]
Chr17:77437035..77910021 [NCBI36]
Chr17:17q25.3		 uncertain significance
GRCh38/hg38 17q25.3(chr17:82078456-82568008)x3 copy number gain See cases [RCV000054050] Chr17:82078456..82568008 [GRCh38]
Chr17:80036332..80525884 [GRCh37]
Chr17:77629621..78119173 [NCBI36]
Chr17:17q25.3		 uncertain significance
GRCh38/hg38 17q25.3(chr17:82072338-83102552)x1 copy number loss See cases [RCV000137356] Chr17:82072338..83102552 [GRCh38]
Chr17:80030214..81048189 [GRCh37]
Chr17:77623503..78653717 [NCBI36]
Chr17:17q25.3		 likely pathogenic
GRCh38/hg38 17q25.3(chr17:81008196-83102584)x3 copy number gain See cases [RCV000138688] Chr17:81008196..83102584 [GRCh38]
Chr17:78981996..81048189 [GRCh37]
Chr17:76596591..78653749 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:81401966-83084062)x1 copy number loss See cases [RCV000142007] Chr17:81401966..83084062 [GRCh38]
Chr17:79375766..81041938 [GRCh37]
Chr17:76990361..78635227 [NCBI36]
Chr17:17q25.3		 likely pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69916435-83102552)x3 copy number gain See cases [RCV000143342] Chr17:69916435..83102552 [GRCh38]
Chr17:67912576..81048189 [GRCh37]
Chr17:65424171..78653717 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:78514452-81041938)x1 copy number loss See cases [RCV000449416] Chr17:78514452..81041938 [GRCh37]
Chr17:17q25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000447539] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:64241326-81041938)x3 copy number gain See cases [RCV000447577] Chr17:64241326..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000510919] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_006137.7(CD7):c.329G>A (p.Gly110Asp) single nucleotide variant Inborn genetic diseases [RCV003261177] Chr17:82316735 [GRCh38]
Chr17:80274611 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:67002415-81041938)x3 copy number gain See cases [RCV000512573] Chr17:67002415..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:80243845-80374899)x1 copy number loss not provided [RCV000683967] Chr17:80243845..80374899 [GRCh37]
Chr17:17q25.3		 likely benign
GRCh37/hg19 17q24.1-25.3(chr17:63689671-81041938)x3 copy number gain not provided [RCV000683952] Chr17:63689671..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:76552611-81041938)x3 copy number gain not provided [RCV000683965] Chr17:76552611..81041938 [GRCh37]
Chr17:17q25.3		 likely pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:79828248-81057996)x1 copy number loss not provided [RCV000752233] Chr17:79828248..81057996 [GRCh37]
Chr17:17q25.3		 pathogenic
GRCh37/hg19 17q24.1-25.3(chr17:62778720-81041938)x3 copy number gain not provided [RCV000849900] Chr17:62778720..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:78608912-81041938)x3 copy number gain not provided [RCV000848418] Chr17:78608912..81041938 [GRCh37]
Chr17:17q25.3		 pathogenic
GRCh37/hg19 17q25.3(chr17:79976464-81041938) copy number loss not specified [RCV002052608] Chr17:79976464..81041938 [GRCh37]
Chr17:17q25.3		 uncertain significance
NC_000017.10:g.(?_79891090)_(80333370_?)del deletion not provided [RCV003109579] Chr17:79891090..80333370 [GRCh37]
Chr17:17q25.3		 pathogenic
NC_000017.10:g.(?_79477716)_(80900339_?)dup duplication not provided [RCV003122586] Chr17:79477716..80900339 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.308G>A (p.Arg103His) single nucleotide variant Inborn genetic diseases [RCV003254748] Chr17:82316756 [GRCh38]
Chr17:80274632 [GRCh37]
Chr17:17q25.3		 likely benign
GRCh37/hg19 17q25.1-25.3(chr17:73481509-81043199)x3 copy number gain not provided [RCV002276051] Chr17:73481509..81043199 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_006137.7(CD7):c.370G>A (p.Gly124Ser) single nucleotide variant Inborn genetic diseases [RCV002729608] Chr17:82316694 [GRCh38]
Chr17:80274570 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.136A>G (p.Ile46Val) single nucleotide variant Inborn genetic diseases [RCV002839728] Chr17:82316928 [GRCh38]
Chr17:80274804 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.14C>T (p.Pro5Leu) single nucleotide variant Inborn genetic diseases [RCV002772355] Chr17:82317482 [GRCh38]
Chr17:80275358 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.10C>G (p.Pro4Ala) single nucleotide variant Inborn genetic diseases [RCV002845458] Chr17:82317486 [GRCh38]
Chr17:80275362 [GRCh37]
Chr17:17q25.3		 likely benign
NM_006137.7(CD7):c.243C>A (p.Asp81Glu) single nucleotide variant Inborn genetic diseases [RCV002989229] Chr17:82316821 [GRCh38]
Chr17:80274697 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.635G>A (p.Arg212Gln) single nucleotide variant Inborn genetic diseases [RCV002669028] Chr17:82315409 [GRCh38]
Chr17:80273285 [GRCh37]
Chr17:17q25.3		 uncertain significance
Single allele deletion See cases [RCV003154621] Chr17:79539041..81052322 [GRCh37]
Chr17:17q25.3		 pathogenic
NM_006137.7(CD7):c.260G>A (p.Arg87His) single nucleotide variant Inborn genetic diseases [RCV003254869] Chr17:82316804 [GRCh38]
Chr17:80274680 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh38/hg38 17q25.3(chr17:82004063-83087346) copy number loss Anomalous pulmonary venous return [RCV003223589] Chr17:82004063..83087346 [GRCh38]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.476C>T (p.Ser159Phe) single nucleotide variant Inborn genetic diseases [RCV003284677] Chr17:82316331 [GRCh38]
Chr17:80274207 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.644A>G (p.Asn215Ser) single nucleotide variant Inborn genetic diseases [RCV003200832] Chr17:82315400 [GRCh38]
Chr17:80273276 [GRCh37]
Chr17:17q25.3		 likely benign
NM_006137.7(CD7):c.56G>T (p.Gly19Val) single nucleotide variant Inborn genetic diseases [RCV003308497] Chr17:82317440 [GRCh38]
Chr17:80275316 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.281A>G (p.Gln94Arg) single nucleotide variant Inborn genetic diseases [RCV003352475] Chr17:82316783 [GRCh38]
Chr17:80274659 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_006137.7(CD7):c.577G>A (p.Gly193Ser) single nucleotide variant Inborn genetic diseases [RCV003349151] Chr17:82316230 [GRCh38]
Chr17:80274106 [GRCh37]
Chr17:17q25.3		 uncertain significance
Single allele duplication not provided [RCV003448687] Chr17:79928042..81152120 [GRCh37]
Chr17:17q25.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3197
Count of miRNA genes:779
Interacting mature miRNAs:932
Transcripts:ENST00000312648, ENST00000578509, ENST00000581434, ENST00000581744, ENST00000582480, ENST00000583376, ENST00000584284
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH103593  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371780,274,569 - 80,274,731UniSTSGRCh37
Build 361777,867,858 - 77,868,020RGDNCBI36
Celera1776,868,070 - 76,868,232RGD
Cytogenetic Map17q25.2-q25.3UniSTS
HuRef1775,673,349 - 75,673,511UniSTS
GDB:178581  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371780,272,757 - 80,273,056UniSTSGRCh37
Build 361777,866,046 - 77,866,345RGDNCBI36
Celera1776,866,258 - 76,866,557RGD
Cytogenetic Map17q25.2-q25.3UniSTS
HuRef1775,671,537 - 75,671,836UniSTS
G29875  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371780,272,913 - 80,273,116UniSTSGRCh37
Build 361777,866,202 - 77,866,405RGDNCBI36
Celera1776,866,414 - 76,866,617RGD
Cytogenetic Map17q25.2-q25.3UniSTS
HuRef1775,671,693 - 75,671,896UniSTS
GDB:180952  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17q25.2-q25.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1 1
Medium 277 766 93 30 1218 25 60 26 9 22 93 497 5 172 22
Low 2006 1511 1495 570 273 418 3241 1059 1770 279 1175 932 153 1028 1822 5 2
Below cutoff 118 705 128 20 211 17 1014 1089 1905 83 165 117 14 1 4 939 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_006137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001752680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001752681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY935534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY935535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY935536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY935537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI838777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI906419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM917451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D00749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M37271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000312648   ⟹   ENSP00000312027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1782,314,873 - 82,317,608 (-)Ensembl
RefSeq Acc Id: ENST00000578509   ⟹   ENSP00000464565
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1782,315,975 - 82,317,558 (-)Ensembl
RefSeq Acc Id: ENST00000581434   ⟹   ENSP00000464546
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1782,316,220 - 82,317,550 (-)Ensembl
RefSeq Acc Id: ENST00000581744
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1782,316,132 - 82,317,553 (-)Ensembl
RefSeq Acc Id: ENST00000582480   ⟹   ENSP00000464182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1782,316,385 - 82,317,579 (-)Ensembl
RefSeq Acc Id: ENST00000583376   ⟹   ENSP00000463489
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1782,314,874 - 82,317,552 (-)Ensembl
RefSeq Acc Id: ENST00000584284   ⟹   ENSP00000463612
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1782,314,868 - 82,317,577 (-)Ensembl
RefSeq Acc Id: NM_006137   ⟹   NP_006128
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381782,314,873 - 82,317,608 (-)NCBI
GRCh371780,272,746 - 80,275,480 (-)ENTREZGENE
Build 361777,866,035 - 77,868,769 (-)NCBI Archive
HuRef1775,671,526 - 75,674,260 (-)ENTREZGENE
CHM1_11780,358,937 - 80,361,671 (-)NCBI
T2T-CHM13v2.01783,183,628 - 83,186,371 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_006128   ⟸   NM_006137
- Peptide Label: precursor
- UniProtKB: P09564 (UniProtKB/Swiss-Prot),   Q29VG3 (UniProtKB/TrEMBL),   Q29VG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000464546   ⟸   ENST00000581434
RefSeq Acc Id: ENSP00000464182   ⟸   ENST00000582480
RefSeq Acc Id: ENSP00000463489   ⟸   ENST00000583376
RefSeq Acc Id: ENSP00000463612   ⟸   ENST00000584284
RefSeq Acc Id: ENSP00000312027   ⟸   ENST00000312648
RefSeq Acc Id: ENSP00000464565   ⟸   ENST00000578509
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P09564-F1-model_v2 AlphaFold P09564 1-240 view protein structure

Promoters
RGD ID:6793861
Promoter ID:HG_KWN:27426
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour
Transcripts:NM_006137,   UC002KEM.1,   UC010DIN.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361777,868,459 - 77,868,959 (-)MPROMDB
RGD ID:7236741
Promoter ID:EPDNEW_H24116
Type:initiation region
Name:CD7_1
Description:CD7 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381782,317,608 - 82,317,668EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1695 AgrOrtholog
COSMIC CD7 COSMIC
Ensembl Genes ENSG00000173762 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000312648 ENTREZGENE
  ENST00000312648.8 UniProtKB/Swiss-Prot
  ENST00000578509.1 UniProtKB/TrEMBL
  ENST00000581434.1 UniProtKB/TrEMBL
  ENST00000582480.1 UniProtKB/TrEMBL
  ENST00000583376.1 UniProtKB/TrEMBL
  ENST00000584284.5 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000173762 GTEx
HGNC ID HGNC:1695 ENTREZGENE
Human Proteome Map CD7 Human Proteome Map
InterPro CD7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:924 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 924 ENTREZGENE
OMIM 186820 OMIM
PANTHER PTHR15343 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-CELL ANTIGEN CD7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26234 PharmGKB
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CD7_HUMAN UniProtKB/Swiss-Prot
  J3QLC7_HUMAN UniProtKB/TrEMBL
  J3QLM0_HUMAN UniProtKB/TrEMBL
  J3QRF1_HUMAN UniProtKB/TrEMBL
  J3QS65_HUMAN UniProtKB/TrEMBL
  J3QS78_HUMAN UniProtKB/TrEMBL
  P09564 ENTREZGENE
  Q29VG3 ENTREZGENE, UniProtKB/TrEMBL
  Q29VG5 ENTREZGENE, UniProtKB/TrEMBL