Nsg2 (neuron specific gene family member 2) - Rat Genome Database

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Gene: Nsg2 (neuron specific gene family member 2) Mus musculus
Analyze
Symbol: Nsg2
Name: neuron specific gene family member 2
RGD ID: 1320562
MGI Page MGI
Description: Predicted to enable clathrin light chain binding activity. Predicted to be involved in clathrin coat assembly and endosomal transport. Located in Golgi cis cisterna membrane and multivesicular body membrane. Is expressed in several structures, including axial skeleton; intestine; nasal epithelium; nervous system; and retina. Orthologous to human NSG2 (neuronal vesicle trafficking associated 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8.5; AA989750; neuron-specific protein family member 2; neuronal vesicle trafficking-associated protein 2; P1; P19; protein p19; R75287
RGD Orthologs
Human
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,949,678 - 32,009,211 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,950,463 - 32,009,202 (+)EnsemblGRCm39 Ensembl
GRCm381131,999,704 - 32,059,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,000,463 - 32,059,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv371131,900,459 - 31,959,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,900,459 - 31,959,202 (+)NCBIMGSCv36mm8
Celera1134,414,704 - 34,473,795 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7829526   PMID:8005598   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15890332   PMID:16141072   PMID:16141073   PMID:16632597  
PMID:18287559   PMID:18725516   PMID:19554387   PMID:21267068   PMID:21873192   PMID:21873635   PMID:24165879   PMID:25872778   PMID:28299779   PMID:29997285   PMID:30680309  


Genomics

Comparative Map Data
Nsg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,949,678 - 32,009,211 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,950,463 - 32,009,202 (+)EnsemblGRCm39 Ensembl
GRCm381131,999,704 - 32,059,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,000,463 - 32,059,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv371131,900,459 - 31,959,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,900,459 - 31,959,202 (+)NCBIMGSCv36mm8
Celera1134,414,704 - 34,473,795 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.72NCBI
NSG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385174,045,706 - 174,109,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5174,045,706 - 174,243,501 (+)EnsemblGRCh38hg38GRCh38
GRCh375173,472,709 - 173,536,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365173,405,330 - 173,468,788 (+)NCBINCBI36Build 36hg18NCBI36
Celera5169,505,599 - 169,569,066 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5168,568,986 - 168,632,329 (+)NCBIHuRef
CHM1_15172,905,228 - 172,968,756 (+)NCBICHM1_1
T2T-CHM13v2.05174,586,043 - 174,649,463 (+)NCBIT2T-CHM13v2.0
Nsg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,106,073 - 16,165,915 (-)NCBIGRCr8
mRatBN7.21015,601,594 - 15,661,441 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,601,596 - 15,661,441 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,348,910 - 20,409,040 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,837,817 - 19,897,945 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,328,108 - 15,388,082 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,867,885 - 15,928,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,867,887 - 15,928,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,762,452 - 15,822,361 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,849,138 - 15,909,029 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1015,268,255 - 15,327,784 (-)NCBICelera
Cytogenetic Map10q12NCBI
Nsg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540826,664,537 - 26,724,949 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540826,664,884 - 26,724,949 (+)NCBIChiLan1.0ChiLan1.0
NSG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1438,491,995 - 38,550,672 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl438,491,989 - 38,550,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha438,439,732 - 38,496,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0438,866,564 - 38,923,797 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl438,865,051 - 38,923,789 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1438,683,239 - 38,740,424 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0438,871,275 - 38,928,491 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0439,379,866 - 39,437,098 (-)NCBIUU_Cfam_GSD_1.0
Nsg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721392,960,048 - 93,013,874 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366091,680,157 - 1,736,929 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366091,682,727 - 1,736,560 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1650,206,076 - 50,361,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11650,301,023 - 50,361,870 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21654,733,823 - 54,735,155 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12376,192,395 - 76,254,725 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2376,192,456 - 76,255,057 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660342,348,688 - 2,412,241 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473315,940,852 - 16,000,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473315,940,077 - 16,000,215 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nsg2
1719 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1161
Count of miRNA genes:643
Interacting mature miRNAs:775
Transcripts:ENSMUST00000020537, ENSMUST00000093219, ENSMUST00000109409
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
25394552Skmw69_mskeletal muscle weight 69, TA (mouse)112969902932329535Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
25394550Skmw71_mskeletal muscle weight 71, gastroc (mouse)113127543232745567Mouse
25394551Skmw70_mskeletal muscle weight 70, EDL (mouse)113132273732594975Mouse
25394558Skmw72_mskeletal muscle weight 72, soleus (mouse)113132943032785551Mouse

Markers in Region
AA989750  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,058,951 - 32,059,071UniSTSGRCm38
MGSCv371131,958,951 - 31,959,071UniSTSGRCm37
Celera1134,473,544 - 34,473,664UniSTS
Cytogenetic Map11A4UniSTS
Whitehead/MRC_RH11464.34UniSTS
RH125202  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,058,530 - 32,058,689UniSTSGRCm38
MGSCv371131,958,530 - 31,958,689UniSTSGRCm37
Celera1134,473,123 - 34,473,282UniSTS
Cytogenetic Map11A4UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Nsg2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A4UniSTS
cM Map1118.72UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK011563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM114408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU058771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD352422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO040919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN176718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U17259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020537   ⟹   ENSMUSP00000020537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,950,463 - 32,009,202 (+)Ensembl
GRCm38.p6 Ensembl1132,000,463 - 32,059,202 (+)Ensembl
RefSeq Acc Id: ENSMUST00000093219   ⟹   ENSMUSP00000090907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,950,502 - 31,983,414 (+)Ensembl
GRCm38.p6 Ensembl1132,000,502 - 32,033,414 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109409   ⟹   ENSMUSP00000105036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,950,463 - 31,968,007 (+)Ensembl
GRCm38.p6 Ensembl1132,000,463 - 32,018,007 (+)Ensembl
RefSeq Acc Id: NM_001290680   ⟹   NP_001277609
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,950,700 - 32,009,211 (+)NCBI
GRCm381132,000,700 - 32,059,211 (+)NCBI
Celera1134,414,664 - 34,473,804 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290681   ⟹   NP_001277610
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,951,277 - 32,009,211 (+)NCBI
GRCm381132,001,277 - 32,059,211 (+)NCBI
Celera1134,414,664 - 34,473,804 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001347080   ⟹   NP_001334009
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,950,419 - 31,983,414 (+)NCBI
GRCm381132,000,419 - 32,033,414 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008741   ⟹   NP_032767
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,950,419 - 32,009,211 (+)NCBI
GRCm381132,000,419 - 32,059,211 (+)NCBI
MGSCv371131,900,459 - 31,959,202 (+)RGD
Celera1134,414,664 - 34,473,804 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030245647   ⟹   XP_030101507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,949,678 - 32,009,206 (+)NCBI
GRCm381131,999,704 - 32,059,206 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156412   ⟹   XP_036012305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,949,678 - 31,983,401 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032767   ⟸   NM_008741
- Peptide Label: isoform 1
- UniProtKB: P47759 (UniProtKB/Swiss-Prot),   Q5SS02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277609   ⟸   NM_001290680
- Peptide Label: isoform 1
- UniProtKB: P47759 (UniProtKB/Swiss-Prot),   Q5SS02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277610   ⟸   NM_001290681
- Peptide Label: isoform 1
- UniProtKB: P47759 (UniProtKB/Swiss-Prot),   Q5SS02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101507   ⟸   XM_030245647
- Peptide Label: isoform X1
- UniProtKB: P47759 (UniProtKB/Swiss-Prot),   Q5SS02 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001334009   ⟸   NM_001347080
- Peptide Label: isoform 2
- UniProtKB: Q5SS03 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000020537   ⟸   ENSMUST00000020537
RefSeq Acc Id: ENSMUSP00000090907   ⟸   ENSMUST00000093219
RefSeq Acc Id: ENSMUSP00000105036   ⟸   ENSMUST00000109409
RefSeq Acc Id: XP_036012305   ⟸   XM_036156412
- Peptide Label: isoform X2
- UniProtKB: Q5SS03 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47759-F1-model_v2 AlphaFold P47759 1-171 view protein structure

Promoters
RGD ID:6821458
Promoter ID:MM_KWN:6861
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000020537,   ENSMUST00000109409,   OTTMUST00000011973
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361131,900,326 - 31,900,826 (+)MPROMDB
RGD ID:8674220
Promoter ID:EPDNEW_M15141
Type:initiation region
Name:Nsg2_1
Description:Mus musculus neuron specific gene family member 2 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381132,000,460 - 32,000,520EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1202070 AgrOrtholog
Ensembl Genes ENSMUSG00000020297 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020537 ENTREZGENE
  ENSMUST00000020537.9 UniProtKB/Swiss-Prot
  ENSMUST00000093219 ENTREZGENE
  ENSMUST00000093219.4 UniProtKB/TrEMBL
  ENSMUST00000109409.8 UniProtKB/TrEMBL
InterPro NSG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18197 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1202070 ENTREZGENE
NCBI Gene 18197 ENTREZGENE
PANTHER NEURONAL VESICLE TRAFFICKING-ASSOCIATED PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR28546 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calcyon UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nsg2 PhenoGen
PIRSF Calcyon UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt NSG2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q5SS02 ENTREZGENE, UniProtKB/TrEMBL
  Q5SS03 ENTREZGENE, UniProtKB/TrEMBL
  Q5SS04_MOUSE UniProtKB/TrEMBL