Rad23a (RAD23 homolog A, nucleotide excision repair protein) - Rat Genome Database
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Gene: Rad23a (RAD23 homolog A, nucleotide excision repair protein) Mus musculus
Analyze
Symbol: Rad23a
Name: RAD23 homolog A, nucleotide excision repair protein
RGD ID: 1320494
MGI Page MGI
Description: Predicted to have several functions, including enzyme binding activity; proteasome binding activity; and ubiquitin binding activity. Involved in cellular response to DNA damage stimulus. Predicted to localize to several cellular components, including centriolar satellite; cytosol; and nucleoplasm. Is expressed in brain and liver. Orthologous to human RAD23A (RAD23 homolog A, nucleotide excision repair protein); PARTICIPATES IN nucleotide excision repair pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2-butoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310040P19Rik; AL024030; HR23A; mHR23A; RAD23a homolog; UV excision repair protein RAD23 homolog A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,561,540 - 85,567,361 (-)NCBIGRCm39mm39
GRCm38884,834,927 - 84,840,652 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,834,019 - 84,840,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,358,551 - 87,364,540 (-)NCBIGRCm37mm9NCBIm37
MGSCv36887,724,757 - 87,730,746 (-)NCBImm8
Celera889,133,785 - 89,139,795 (-)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4-hydroxynon-2-enal  (EXP)
acrolein  (ISO)
alpha-pinene  (ISO)
amphibole asbestos  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (EXP,ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
carmustine  (ISO)
chlorogenic acid  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
finasteride  (ISO)
flutamide  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
hydroxyurea  (EXP)
indirubin-3'-monoxime  (ISO)
kainic acid  (ISO)
kojic acid  (ISO)
lipopolysaccharide  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (ISO)
Osajin  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paclitaxel  (EXP)
pentachlorophenol  (ISO)
pirinixic acid  (EXP,ISO)
Pomiferin  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
Rosavin  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thapsigargin  (EXP)
thimerosal  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc pyrithione  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7671812   PMID:8808275   PMID:8858346   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12815074   PMID:14610273   PMID:15336624   PMID:16141072   PMID:16141073  
PMID:17662948   PMID:18369441   PMID:21677750   PMID:21706023   PMID:21873635   PMID:22431748   PMID:25217174   PMID:26998601   PMID:28190767   PMID:32325033  


Genomics

Comparative Map Data
Rad23a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,561,540 - 85,567,361 (-)NCBIGRCm39mm39
GRCm38884,834,927 - 84,840,652 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,834,019 - 84,840,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,358,551 - 87,364,540 (-)NCBIGRCm37mm9NCBIm37
MGSCv36887,724,757 - 87,730,746 (-)NCBImm8
Celera889,133,785 - 89,139,795 (-)NCBICelera
Cytogenetic Map8C3NCBI
RAD23A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1912,945,855 - 12,953,642 (+)EnsemblGRCh38hg38GRCh38
GRCh381912,945,846 - 12,953,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371913,056,628 - 13,064,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,917,654 - 12,925,455 (+)NCBINCBI36hg18NCBI36
Build 341912,917,653 - 12,925,455NCBI
Celera1912,946,385 - 12,954,184 (+)NCBI
Cytogenetic Map19p13.13NCBI
HuRef1912,628,527 - 12,636,354 (+)NCBIHuRef
CHM1_11913,057,148 - 13,064,977 (+)NCBICHM1_1
Rad23a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,949,488 - 25,956,677 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,949,490 - 25,955,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,925,111 - 36,931,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,971,070 - 24,976,901 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11924,975,895 - 24,981,725 (+)NCBI
Celera1922,871,740 - 22,877,567 (+)NCBICelera
Cytogenetic Map19q11NCBI
Rad23a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,991,479 - 32,000,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,991,478 - 31,997,277 (+)NCBIChiLan1.0ChiLan1.0
RAD23A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11913,250,718 - 13,258,482 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,250,718 - 13,258,482 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01912,508,232 - 12,516,068 (+)NCBIMhudiblu_PPA_v0panPan3
RAD23A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2049,241,358 - 49,250,039 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12049,244,330 - 49,250,058 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rad23a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366592,001,356 - 2,007,520 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD23A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,084,856 - 66,096,484 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,090,089 - 66,096,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,289,387 - 66,295,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAD23A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,625,464 - 11,633,922 (+)NCBI
ChlSab1.1 Ensembl611,625,458 - 11,637,419 (+)Ensembl
Rad23a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624901515,761 - 522,845 (+)NCBI

Position Markers
RH125456  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,834,692 - 84,834,829UniSTSGRCm38
MGSCv37887,358,591 - 87,358,728UniSTSGRCm37
Celera889,133,825 - 89,133,960UniSTS
Cytogenetic Map8C3UniSTS
Rad23a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,838,927 - 84,839,043UniSTSGRCm38
MGSCv37887,359,054 - 87,359,490UniSTSGRCm37
Celera889,138,080 - 89,138,196UniSTS
Cytogenetic Map8C3UniSTS
cM Map8 UniSTS
Rad23a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,835,155 - 84,835,591UniSTSGRCm38
MGSCv37887,359,054 - 87,359,490UniSTSGRCm37
Celera889,134,287 - 89,134,744UniSTS
Cytogenetic Map8C3UniSTS
cM Map8 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1680
Count of miRNA genes:564
Interacting mature miRNAs:662
Transcripts:ENSMUST00000003911, ENSMUST00000109761, ENSMUST00000125711, ENSMUST00000128035, ENSMUST00000134395, ENSMUST00000144675, ENSMUST00000144994
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001297606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X92410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000003911   ⟹   ENSMUSP00000003911
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,834,652 - 84,840,641 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109761   ⟹   ENSMUSP00000105383
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,834,911 - 84,840,665 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125711
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,838,299 - 84,840,636 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128035   ⟹   ENSMUSP00000115664
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,835,620 - 84,840,665 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134395
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,837,722 - 84,838,666 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144675   ⟹   ENSMUSP00000114431
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,834,019 - 84,838,047 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144994
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,837,735 - 84,838,680 (-)Ensembl
RefSeq Acc Id: NM_001297606   ⟹   NP_001284535
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,556 - 85,567,281 (-)NCBI
GRCm38884,834,927 - 84,840,652 (-)NCBI
Celera889,133,785 - 89,139,819 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001297607   ⟹   NP_001284536
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,556 - 85,567,281 (-)NCBI
GRCm38884,834,927 - 84,840,652 (-)NCBI
Celera889,133,785 - 89,139,819 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378894   ⟹   NP_001365823
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,556 - 85,567,281 (-)NCBI
GRCm38884,834,927 - 84,840,652 (-)NCBI
RefSeq Acc Id: NM_001378895   ⟹   NP_001365824
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,556 - 85,567,281 (-)NCBI
GRCm38884,834,927 - 84,840,652 (-)NCBI
RefSeq Acc Id: NM_001378896   ⟹   NP_001365825
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,562,718 - 85,567,281 (-)NCBI
GRCm38884,836,089 - 84,840,652 (-)NCBI
RefSeq Acc Id: NM_009010   ⟹   NP_033036
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,556 - 85,567,281 (-)NCBI
GRCm38884,834,927 - 84,840,652 (-)NCBI
MGSCv37887,358,551 - 87,364,540 (-)RGD
Celera889,133,785 - 89,139,819 (-)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166165
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,556 - 85,567,281 (-)NCBI
GRCm38884,834,927 - 84,840,652 (-)NCBI
RefSeq Acc Id: NR_166166
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,556 - 85,567,281 (-)NCBI
GRCm38884,834,927 - 84,840,652 (-)NCBI
RefSeq Acc Id: XR_004934781
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,540 - 85,567,361 (-)NCBI
RefSeq Acc Id: XR_004934782
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,540 - 85,567,361 (-)NCBI
RefSeq Acc Id: XR_004934783
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,561,540 - 85,567,360 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_033036   ⟸   NM_009010
- Peptide Label: isoform 2
- UniProtKB: Q3TN85 (UniProtKB/TrEMBL),   Q8CAP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001284536   ⟸   NM_001297607
- Peptide Label: isoform 3
- UniProtKB: Q3TN85 (UniProtKB/TrEMBL),   Q8CAP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001284535   ⟸   NM_001297606
- Peptide Label: isoform 1
- UniProtKB: P54726 (UniProtKB/Swiss-Prot),   Q3TN85 (UniProtKB/TrEMBL),   Q8CAP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001365824   ⟸   NM_001378895
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001365823   ⟸   NM_001378894
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001365825   ⟸   NM_001378896
- Peptide Label: isoform 6
RefSeq Acc Id: ENSMUSP00000114431   ⟸   ENSMUST00000144675
RefSeq Acc Id: ENSMUSP00000003911   ⟸   ENSMUST00000003911
RefSeq Acc Id: ENSMUSP00000105383   ⟸   ENSMUST00000109761
RefSeq Acc Id: ENSMUSP00000115664   ⟸   ENSMUST00000128035
Protein Domains
STI1   UBA   Ubiquitin-like

Promoters
RGD ID:8667693
Promoter ID:EPDNEW_M11878
Type:multiple initiation site
Name:Rad23a_1
Description:Mus musculus RAD23 homolog A, nucleotide excision repair protein, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,840,645 - 84,840,705EPDNEW
RGD ID:6843660
Promoter ID:MM_KWN:55097
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B6
Transcripts:OTTMUST00000053038,   OTTMUST00000053039,   OTTMUST00000074397
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,361,981 - 87,363,527 (-)MPROMDB
RGD ID:6843661
Promoter ID:MM_KWN:55098
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_009010,   OTTMUST00000053034,   OTTMUST00000053037,   UC009MNL.1,   UC009MNN.1,   UC009MNO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,364,066 - 87,365,482 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105126 AgrOrtholog
Ensembl Genes ENSMUSG00000003813 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000003911 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105383 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114431 UniProtKB/TrEMBL
  ENSMUSP00000115664 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000003911 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000109761 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000128035 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000144675 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Rad23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAD23A/B_UBA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STI1_HS-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
  XPC-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XPC-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19358 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:105126 ENTREZGENE
NCBI Gene 19358 ENTREZGENE
Pfam UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ubiquitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XPC-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rad23a PhenoGen
PRINTS RAD23PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART STI1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101238 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs rad23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.255539 ENTREZGENE
UniProt F6YL88_MOUSE UniProtKB/TrEMBL
  P54726 ENTREZGENE
  Q3TN85 ENTREZGENE, UniProtKB/TrEMBL
  Q8CAP3 ENTREZGENE, UniProtKB/TrEMBL
  Q9D717_MOUSE UniProtKB/TrEMBL
  RD23A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B7ZNQ1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Rad23a  RAD23 homolog A, nucleotide excision repair protein    RAD23a homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED