TCEA1 (transcription elongation factor A1)

Gene: TCEA1 (transcription elongation factor A1) Homo sapiens

Analyze

Symbol:

TCEA1

Name:

transcription elongation factor A1

RGD ID:

1320461

HGNC Page

HGNC:11612

Description:

Predicted to enable DNA binding activity; translation elongation factor activity; and zinc ion binding activity. Predicted to be involved in DNA-templated transcription and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within erythrocyte differentiation and positive regulation of DNA-templated transcription. Located in nucleolus and nucleoplasm. Part of transcription factor TFIID complex.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GTF2S; SII; TCEA; TF2S; TFIIS; transcription elongation factor A (SII), 1; transcription elongation factor A protein 1; transcription elongation factor S-II protein 1; transcription elongation factor TFIIS.o; transcription factor IIS

RGD Orthologs

Alliance Genes

More Info

more info ...

Related Pseudogenes:

TCEA1P1 TCEA1P2 TCEA1P3 TCEA1P4

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	53,966,556 - 54,022,448 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	53,966,552 - 54,022,448 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	54,879,116 - 54,935,008 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	55,041,669 - 55,097,561 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	50,869,815 - 50,924,590 (-)	NCBI		Celera
Cytogenetic Map	8	q11.23	NCBI
HuRef	8	50,347,344 - 50,402,986 (-)	NCBI		HuRef
CHM1_1	8	54,930,631 - 54,986,634 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	54,343,951 - 54,399,849 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

5-azacytidine (EXP)

acrylamide (ISO)

aflatoxin B1 (EXP)

all-trans-retinoic acid (EXP)

aristolochic acid A (EXP)

arsenite(3-) (EXP)

benzo[a]pyrene (EXP)

benzo[e]pyrene (EXP)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bucladesine (EXP)

cadmium dichloride (ISO)

caffeine (EXP)

clofibric acid (ISO)

copper(II) sulfate (EXP)

coumarin (EXP)

dibutyl phthalate (ISO)

dicrotophos (EXP)

disodium selenite (EXP)

endosulfan (ISO)

enzyme inhibitor (EXP)

ethanol (ISO)

flutamide (ISO)

folic acid (ISO)

FR900359 (EXP)

fulvestrant (EXP)

genistein (EXP)

gentamycin (ISO)

gold atom (EXP)

gold(0) (EXP)

hydrogen peroxide (EXP)

ivermectin (EXP)

lamivudine (EXP)

medroxyprogesterone acetate (EXP)

methapyrilene (EXP)

N-nitrosodiethylamine (ISO)

nefazodone (ISO)

nickel subsulfide (ISO)

paracetamol (ISO)

perfluorononanoic acid (EXP)

perfluorooctanoic acid (EXP)

phenobarbital (EXP)

quercitrin (EXP)

rimonabant (ISO)

sodium arsenite (EXP)

sunitinib (EXP)

tert-butyl hydroperoxide (EXP)

Tributyltin oxide (ISO)

valproic acid (ISO)

versicolorin A (EXP)

zidovudine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IBA,IEA)

erythrocyte differentiation (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of exoribonuclease activity (ISO)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

transcription by RNA polymerase II (TAS)

transcription elongation by RNA polymerase II (IEA)

translational elongation (IEA)

Cellular Component

nucleolus (IDA)

nucleoplasm (IDA,TAS)

nucleus (IBA,IEA)

transcription factor TFIID complex (IDA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

nucleic acid binding (IEA)

protein binding (IPI)

translation elongation factor activity (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (TAS)

References

References - curated

#	Reference Title	Reference Citation
1.	Control of transcriptional elongation.	Kwak H and Lis JT, Annu Rev Genet. 2013;47:483-508. doi: 10.1146/annurev-genet-110711-155440. Epub 2013 Sep 11.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:1378807	PMID:1559613	PMID:1708494	PMID:2471707	PMID:7626141	PMID:8112616	PMID:8206389	PMID:8566795	PMID:8798387	PMID:8812434	PMID:9305922	PMID:9765201
PMID:9765293	PMID:10454562	PMID:11313499	PMID:11591653	PMID:12477932	PMID:12676794	PMID:12761297	PMID:12878157	PMID:12914699	PMID:12943681	PMID:14506279	PMID:14702039
PMID:15302935	PMID:15351637	PMID:15489334	PMID:15635413	PMID:16344560	PMID:16630816	PMID:16648364	PMID:16736500	PMID:17081983	PMID:17643375	PMID:18029348	PMID:18562274
PMID:20178742	PMID:20562857	PMID:20729154	PMID:21070792	PMID:21127351	PMID:21596312	PMID:21729782	PMID:21832049	PMID:21873635	PMID:22863883	PMID:22939629	PMID:23748380
PMID:25281560	PMID:26186194	PMID:26344197	PMID:26496610	PMID:26752685	PMID:26777405	PMID:27193682	PMID:27453043	PMID:27634302	PMID:28186131	PMID:28514442	PMID:28700943
PMID:30997501	PMID:31519522	PMID:31751430	PMID:32296183	PMID:32416067	PMID:32513696	PMID:32694731	PMID:32929329	PMID:33187986	PMID:33536335	PMID:33742100	PMID:33961781
PMID:34108663	PMID:34133714	PMID:34709727	PMID:34822292	PMID:35182466	PMID:35446349	PMID:35785414	PMID:35831314	PMID:35864588	PMID:35944360	PMID:35987950	PMID:36215168
PMID:36232890	PMID:36273042	PMID:36369321	PMID:36373674	PMID:37689310	PMID:37696373	PMID:37827155

Genomics

Comparative Map Data

TCEA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	53,966,556 - 54,022,448 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	53,966,552 - 54,022,448 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	54,879,116 - 54,935,008 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	55,041,669 - 55,097,561 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	50,869,815 - 50,924,590 (-)	NCBI		Celera
Cytogenetic Map	8	q11.23	NCBI
HuRef	8	50,347,344 - 50,402,986 (-)	NCBI		HuRef
CHM1_1	8	54,930,631 - 54,986,634 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	54,343,951 - 54,399,849 (-)	NCBI		T2T-CHM13v2.0

Tcea1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	4,927,917 - 4,968,132 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	4,928,037 - 4,968,132 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	4,857,694 - 4,897,909 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	4,857,814 - 4,897,909 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	4,847,775 - 4,887,990 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	4,847,896 - 4,887,986 (+)	NCBI		MGSCv36	mm8
Celera	1	4,869,075 - 4,909,317 (+)	NCBI		Celera
Cytogenetic Map	1	A1	NCBI
cM Map	1	1.79	NCBI

Tcea1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	19,414,351 - 19,466,629 (-)	NCBI		GRCr8
mRatBN7.2	5	14,631,454 - 14,668,769 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	10,400,829 - 10,402,942 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	5	14,631,454 - 14,668,745 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	16,825,171 - 16,862,994 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	13,439,353 - 13,441,754 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	18,159,843 - 18,197,667 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	14,511,183 - 14,548,494 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	14,511,183 - 14,548,429 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	19,293,482 - 19,330,800 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	14,834,045 - 14,871,291 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	14,834,044 - 14,871,291 (-)	NCBI
Celera	5	14,002,673 - 14,039,908 (-)	NCBI		Celera
Cytogenetic Map	5	q12	NCBI

Tcea1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	13,312,823 - 13,347,129 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	13,312,823 - 13,347,128 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCEA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	69,605,178 - 69,661,379 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	45,329,958 - 45,386,160 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	50,393,553 - 50,449,698 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	47,770,661 - 47,825,804 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	47,770,661 - 47,825,804 (-)	Ensembl	panpan1.1		panPan2

TCEA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	5,616,936 - 5,655,341 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	5,616,961 - 5,697,284 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	5,991,960 - 6,030,317 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	5,693,119 - 5,731,600 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	5,691,587 - 5,773,875 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	5,629,669 - 5,668,274 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	5,835,448 - 5,873,912 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	5,918,533 - 5,956,917 (-)	NCBI		UU_Cfam_GSD_1.0

Tcea1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	73,867,321 - 73,908,166 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936496	877,773 - 918,175 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936496	877,311 - 918,191 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCEA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	77,109,594 - 77,138,320 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	77,109,555 - 77,138,324 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	84,179,838 - 84,208,587 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCEA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	50,048,771 - 50,104,189 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	50,048,474 - 50,104,130 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	91,833,826 - 91,890,759 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcea1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	1,637,465 - 1,704,154 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	1,637,453 - 1,700,839 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TCEA1
6 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3	copy number gain	See cases [RCV000051206]	Chr8:241530..145049449 [GRCh38] Chr8:191530..146274835 [GRCh37] Chr8:181530..146245639 [NCBI36] Chr8:8p23.3-q24.3	pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]\|See cases [RCV000053604]	Chr8:244417..145054775 [GRCh38] Chr8:194417..146280161 [GRCh37] Chr8:184417..146250965 [NCBI36] Chr8:8p23.3-q24.3	pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3	copy number gain	See cases [RCV000053602]	Chr8:241530..145054634 [GRCh38] Chr8:191530..146280020 [GRCh37] Chr8:181530..146250824 [NCBI36] Chr8:8p23.3-q24.3	pathogenic
GRCh38/hg38 8q11.1-13.2(chr8:46031334-69303787)x3	copy number gain	See cases [RCV000133720]	Chr8:46031334..69303787 [GRCh38] Chr8:46942956..70216022 [GRCh37] Chr8:47062121..70378576 [NCBI36] Chr8:8q11.1-13.2	pathogenic
GRCh38/hg38 8q11.23(chr8:53790469-54207499)x3	copy number gain	See cases [RCV000135369]	Chr8:53790469..54207499 [GRCh38] Chr8:54703029..55120059 [GRCh37] Chr8:54865582..55282612 [NCBI36] Chr8:8q11.23	uncertain significance
GRCh38/hg38 8q11.23-12.1(chr8:53996579-56163431)x1	copy number loss	See cases [RCV000135764]	Chr8:53996579..56163431 [GRCh38] Chr8:54909139..57075990 [GRCh37] Chr8:55071692..57238544 [NCBI36] Chr8:8q11.23-12.1	likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3	copy number gain	See cases [RCV000138643]	Chr8:241605..145054781 [GRCh38] Chr8:191605..146280167 [GRCh37] Chr8:181605..146250971 [NCBI36] Chr8:8p23.3-q24.3	pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3	copy number gain	See cases [RCV000139539]	Chr8:46031340..139285494 [GRCh38] Chr8:46942962..140297737 [GRCh37] Chr8:47062127..140366919 [NCBI36] Chr8:8q11.1-24.3	pathogenic
GRCh38/hg38 8p12-q12.1(chr8:36580103-59618998)x3	copy number gain	See cases [RCV000139582]	Chr8:36580103..59618998 [GRCh38] Chr8:36437621..60531557 [GRCh37] Chr8:36556779..60694111 [NCBI36] Chr8:8p12-q12.1	pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3	copy number gain	See cases [RCV000141808]	Chr8:208048..145070385 [GRCh38] Chr8:158048..146295771 [GRCh37] Chr8:148048..146266575 [NCBI36] Chr8:8p23.3-q24.3	pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3	copy number gain	See cases [RCV000142021]	Chr8:21291522..145070385 [GRCh38] Chr8:21149033..146295771 [GRCh37] Chr8:21193313..146266575 [NCBI36] Chr8:8p21.3-q24.3	pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3	copy number gain	See cases [RCV000142858]	Chr8:226452..145068712 [GRCh38] Chr8:176452..146294098 [GRCh37] Chr8:166452..146264902 [NCBI36] Chr8:8p23.3-q24.3	pathogenic
GRCh38/hg38 8q11.21-12.1(chr8:49471778-57825470)x1	copy number loss	See cases [RCV000142642]	Chr8:49471778..57825470 [GRCh38] Chr8:50384337..58738029 [GRCh37] Chr8:50546890..58900583 [NCBI36] Chr8:8q11.21-12.1	pathogenic\|likely pathogenic
GRCh38/hg38 8q11.23-12.3(chr8:53325389-61863018)x1	copy number loss	See cases [RCV000143182]	Chr8:53325389..61863018 [GRCh38] Chr8:54237949..62775577 [GRCh37] Chr8:54400502..62938131 [NCBI36] Chr8:8q11.23-12.3	pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3	copy number gain	See cases [RCV000148092]	Chr8:241530..145054634 [GRCh38] Chr8:191530..146280020 [GRCh37] Chr8:181530..146250824 [NCBI36] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8q11.23-12.3(chr8:53436131-65195953)x3	copy number gain	See cases [RCV000239428]	Chr8:53436131..65195953 [GRCh37] Chr8:8q11.23-12.3	pathogenic
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3	copy number gain	not provided [RCV000848192]	Chr8:31936551..146295771 [GRCh37] Chr8:8p12-q24.3	pathogenic
GRCh37/hg19 8p21.2-q12.1(chr8:24772064-24813176)x3	copy number gain	See cases [RCV000446588]	Chr8:24772064..24813176 [GRCh37] Chr8:8p21.2-q12.1	uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3	copy number gain	See cases [RCV000447507]	Chr8:158991..146280828 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8q11.23-12.1(chr8:54661151-57790737)x3	copy number gain	See cases [RCV000445710]	Chr8:54661151..57790737 [GRCh37] Chr8:8q11.23-12.1	uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)	copy number gain	See cases [RCV000510234]	Chr8:158049..146295771 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3	copy number gain	See cases [RCV000511095]	Chr8:158049..146295771 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3	copy number gain	See cases [RCV000512169]	Chr8:12490999..146295771 [GRCh37] Chr8:8p23.1-q24.3	pathogenic
GRCh37/hg19 8q11.1-11.23(chr8:46863521-55218838)x3	copy number gain	not provided [RCV000683033]	Chr8:46863521..55218838 [GRCh37] Chr8:8q11.1-11.23	uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3	copy number gain	not provided [RCV000747254]	Chr8:164984..146293414 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3	copy number gain	not provided [RCV000747248]	Chr8:10213..146293414 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8q11.21-12.1(chr8:49822483-58822602)x1	copy number loss	not provided [RCV000747540]	Chr8:49822483..58822602 [GRCh37] Chr8:8q11.21-12.1	pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3	copy number gain	not provided [RCV000848478]	Chr8:158048..146295771 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8p11.22-q12.3(chr8:39555657-64049089)x3	copy number gain	not provided [RCV000846266]	Chr8:39555657..64049089 [GRCh37] Chr8:8p11.22-q12.3	pathogenic
NM_006756.4(TCEA1):c.345C>A (p.Asn115Lys)	single nucleotide variant	Inborn genetic diseases [RCV003270528]	Chr8:53988235 [GRCh38] Chr8:54900795 [GRCh37] Chr8:8q11.23	uncertain significance
NM_006756.4(TCEA1):c.481A>G (p.Ile161Val)	single nucleotide variant	Inborn genetic diseases [RCV003241127]	Chr8:53987011 [GRCh38] Chr8:54899571 [GRCh37] Chr8:8q11.23	uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)	copy number gain	Polydactyly [RCV002280629]	Chr8:158048..146295771 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8q11.23(chr8:52605905-54913501)x3	copy number gain	not provided [RCV001258408]	Chr8:52605905..54913501 [GRCh37] Chr8:8q11.23	uncertain significance
NM_006756.4(TCEA1):c.877G>C (p.Glu293Gln)	single nucleotide variant	Inborn genetic diseases [RCV002767438]	Chr8:53970412 [GRCh38] Chr8:54882972 [GRCh37] Chr8:8q11.23	uncertain significance
NM_006756.4(TCEA1):c.361A>G (p.Asn121Asp)	single nucleotide variant	Inborn genetic diseases [RCV003178355]	Chr8:53988219 [GRCh38] Chr8:54900779 [GRCh37] Chr8:8q11.23	uncertain significance
NM_006756.4(TCEA1):c.335A>G (p.Asn112Ser)	single nucleotide variant	Inborn genetic diseases [RCV003207534]	Chr8:53988245 [GRCh38] Chr8:54900805 [GRCh37] Chr8:8q11.23	uncertain significance
NM_006756.4(TCEA1):c.836G>A (p.Arg279His)	single nucleotide variant	Inborn genetic diseases [RCV003378936]	Chr8:53970453 [GRCh38] Chr8:54883013 [GRCh37] Chr8:8q11.23	uncertain significance
GRCh37/hg19 8q11.23(chr8:54906222-55166087)x3	copy number gain	not provided [RCV003484741]	Chr8:54906222..55166087 [GRCh37] Chr8:8q11.23	uncertain significance
GRCh37/hg19 8q11.23(chr8:54906222-55183775)x3	copy number gain	not provided [RCV003484740]	Chr8:54906222..55183775 [GRCh37] Chr8:8q11.23	uncertain significance
GRCh37/hg19 8q11.23(chr8:54798193-55200535)x3	copy number gain	not provided [RCV003484739]	Chr8:54798193..55200535 [GRCh37] Chr8:8q11.23	uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3	copy number gain	not specified [RCV003986742]	Chr8:158048..146295771 [GRCh37] Chr8:8p23.3-q24.3	pathogenic
GRCh37/hg19 8p21.2-q21.3(chr8:27024288-89410121)x3	copy number gain	not specified [RCV003986754]	Chr8:27024288..89410121 [GRCh37] Chr8:8p21.2-q21.3	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2045
Count of miRNA genes:	719
Interacting mature miRNAs:	804
Transcripts:	ENST00000396401, ENST00000517351, ENST00000518310, ENST00000518784, ENST00000519704, ENST00000520534, ENST00000521086, ENST00000521604, ENST00000521836, ENST00000522397, ENST00000522635
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

RH66562

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	8	54,879,268 - 54,879,388	UniSTS	GRCh37
Build 36	8	55,041,821 - 55,041,941	RGD	NCBI36
Celera	8	50,869,967 - 50,870,087	RGD
Cytogenetic Map	8	q11.2	UniSTS
HuRef	8	50,347,496 - 50,347,616	UniSTS

D3S4495

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	37,317,922 - 37,318,873	UniSTS	GRCh37
GRCh37	9	99,830,743 - 99,832,354	UniSTS	GRCh37
Build 36	3	37,292,926 - 37,293,877	RGD	NCBI36
Celera	9	70,345,028 - 70,346,632	UniSTS
Celera	3	37,251,492 - 37,252,443	RGD
Cytogenetic Map	3	p22	UniSTS
Cytogenetic Map	8	q11.2	UniSTS
HuRef	9	69,431,364 - 69,432,976	UniSTS
HuRef	3	37,258,957 - 37,259,908	UniSTS

D8S2054

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	8	54,880,504 - 54,880,600	UniSTS	GRCh37
GRCh37	3	37,318,153 - 37,318,249	UniSTS	GRCh37
Build 36	3	37,293,157 - 37,293,253	RGD	NCBI36
Celera	8	50,870,872 - 50,870,968	UniSTS
Celera	3	37,251,723 - 37,251,819	RGD
Cytogenetic Map	3	p22-p21.3	UniSTS
Cytogenetic Map	3	p22	UniSTS
Cytogenetic Map	8	q11.2	UniSTS
HuRef	8	50,348,732 - 50,348,828	UniSTS
HuRef	3	37,259,188 - 37,259,284	UniSTS
Whitehead-YAC Contig Map	8		UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

2408

1842

1659

572

1369

414

4084

1539

3427

379

1442

1606

171

1201

2521

Low

1148

578

273

658

307

267

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_006756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_201437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_109901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_109902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006716467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011517578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054361110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054361111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC100821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK026617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK094425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK290454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK297729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK297957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AU125645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AU280634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC072460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM477937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ016366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BT019995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX538034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR542221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA021678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB091231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GQ900953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M81601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X57198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X62585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000396401 ⟹ ENSP00000395483

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,966,552 - 54,022,448 (-)	Ensembl

RefSeq Acc Id:

ENST00000517351

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,993,695 - 54,022,310 (-)	Ensembl

RefSeq Acc Id:

ENST00000518310 ⟹ ENSP00000428868

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,993,657 - 54,022,314 (-)	Ensembl

RefSeq Acc Id:

ENST00000518784 ⟹ ENSP00000429182

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,999,625 - 54,022,159 (-)	Ensembl

RefSeq Acc Id:

ENST00000519704 ⟹ ENSP00000430450

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	54,000,010 - 54,022,326 (-)	Ensembl

RefSeq Acc Id:

ENST00000520534 ⟹ ENSP00000428370

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,993,376 - 54,022,148 (-)	Ensembl

RefSeq Acc Id:

ENST00000521086

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,966,560 - 54,022,265 (-)	Ensembl

RefSeq Acc Id:

ENST00000521604 ⟹ ENSP00000428426

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,966,556 - 54,022,448 (-)	Ensembl

RefSeq Acc Id:

ENST00000521836

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,993,704 - 54,021,929 (-)	Ensembl

RefSeq Acc Id:

ENST00000522397

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,970,264 - 54,022,448 (-)	Ensembl

RefSeq Acc Id:

ENST00000522635 ⟹ ENSP00000429192

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,967,170 - 54,022,269 (-)	Ensembl

RefSeq Acc Id:

ENST00000638322 ⟹ ENSP00000492551

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	54,010,102 - 54,022,125 (-)	Ensembl

RefSeq Acc Id:

ENST00000640041 ⟹ ENSP00000492389

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,970,288 - 54,022,456 (-)	Ensembl

RefSeq Acc Id:

ENST00000640382 ⟹ ENSP00000491445

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	53,970,288 - 54,022,456 (-)	Ensembl

RefSeq Acc Id:

ENST00000640873 ⟹ ENSP00000491370

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	8	54,009,763 - 54,022,125 (-)	Ensembl

RefSeq Acc Id:

NM_006756 ⟹ NP_006747

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	53,966,556 - 54,022,448 (-)	NCBI
GRCh37	8	54,879,116 - 54,935,008 (-)	ENTREZGENE
Build 36	8	55,041,669 - 55,097,561 (-)	NCBI Archive
HuRef	8	50,347,342 - 50,402,986 (-)	NCBI
CHM1_1	8	54,930,629 - 54,986,642 (-)	NCBI
T2T-CHM13v2.0	8	54,343,951 - 54,399,849 (-)	NCBI

Sequence:

show sequence

AGCCGGAAGCCACGCCTGCCCACTAGCCCGACGCCCGCCTGGCGGGAACATGGGCTCGCCCCTC
ACCAGCGATCTGCAGTCAGTTGGTAGCGCCTGCACGTCGCGCGCGGTGTTCGATTGTCGCTGCC
TGGGGAGGAGGAGCCGGAGCCGCCGCCGCCGCCGCCGCCGCCGCGGGCTTCGTTCGTAAGGAAG
GGGGCCTAGGCCCGGGCCTGCGGTGGTGGGGGTTGCTGCGCGCCGGGGGTCGCTCCTGCTGTGT
CTTCCGCTCCAGCTTCGCCCACTTCCCCTTGCCAGCGGGGTGGGCGCGGAGAAGACCTGCCGGA
GCCATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACG
CGGCTGGAGCATTGGATTTGCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACTGCA
GTCCACAAGAATCGGAATGTCAGTTAATGCTATTCGCAAGCAGAGTACAGATGAGGAAGTTACA
TCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCATCAACTGAGAAAG
ACCTTGACGAAAAGAAGAAAGAACCTGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGAAGA
AAGTACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGATACTTATGTT
TCATCCTTTCCTCGGGCACCAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGCTTG
CTGCAGCTCTTCGAACAGGGGATGACTACATTGCAATTGGAGCTGATGAGGAAGAATTAGGATC
TCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATACAAAAATAGAGTA
CGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCTGTG
GGAATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTGAA
AGAGATGCGGAAAAACTTGACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTGGG
ACCCAGACTGACTTGTTCACATGTGGCAAATGTAAAAAGAAGAATTGCACTTACACACAGGTAC
AAACCCGTAGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAATGTGGAAATCGATG
GAAGTTCTGTTGAGTTGGAAGAATTGGCAAAATATCTGGACCATTAAGAAAACGGATTTTGTAA
CTAGCTTTAAACTAGGCCAAGCAACTAGTTTTCCTGCAAATCAAATTTTTAAAGCAACTTGGGT
TAGACTTTGTTTTTGACCTAACATCCCTTCCTTAAATGCCTTCTGTAGTTTCAGATCAGTAGGG
AGACCATATAATAATTTTATGGTACCTGTTTCAAAACATATTTTTTCTGTTTTTATAAGTAAGT
TGATATTAATTAAACTCTTGGCAATATTTCTTCTTTCTTAAAGGAAAATATACCTTAACTTTTT
TTCTTTTACACTGTGAAACATACACAGTAGAAATTCTGTTACTCTCTGTTATTAATACATAAAT
GAAAATACATTTTTTTCCATATTGGCATGTAGCTACAAATATTAAAGGAGGAGAAAAGGTAATA
TAATTTTAGGTTTACCAAATATGGTGTGTATTCAAATAATACTTGACCAGCTTATCTAAAATGT
ACATAATTTTGAGGTAGCTTATGAATTTGATTTTAATTATTATGTTCACAAGCTTGGAATATTA
GATATTATTTTGCATCTGTAACTAACCGTGATCATCATTTCTTGTAATTTCTTGTACATGTATA
TTACTTGTTCTTAATAGATTTTTGGAAACAAGACTTTATTGAGATCAGTTTGGTTTTCCTGTTA
ATTTACCTGTTTGACTTTATAATGTGTTTTAGTTTTGCAGAAGAACACTGTTGTAGTTTAGAAG
GCTTTTCATAAATCCCCTCATAGGCAAAGATGAAAACTTCCCACTATTTTTTTCCCCTCTTAGG
AAGACATACTGGAAAGAAAATGTTTAGCATCTTAGTGTAGTATAGCTATTGTAAACAGTTCATG
ACTAGATTTTGATTCGGAAATCTATACTGACCAAGGATTAATCTTAAGGATTGTATAATTCATT
AAAGCTGTGGTCTTTCCATGTGGAGACTGATAGAAAATAATTTTGTCCCAAGTCTTATTTGCTG
ACTTTTTCTGTCATGAGTGAGATTGTTGAACAAACTGAATATATGGGCTATAGCAAGTAGCTTT
ACAGTACAGATCTTACAATTAAGTTTTGCTTTTGTTAAAGTGTGTACCATTTTTTCTGTTTGGA
GTAAGACAAAAATTGTTTTGACATAGGTTCCCTAGGGTACACTTGCTCTAGCATACTTTAAAGG
CCACTGTTGCAAAGTCTACATTTTATGCTGAATCTGCATTCTGTCAGGCACCCGTAGAAAGACC
TCAGTACATGCTTTGCACTCTCCTTTGCTCCCTTTTTCCAATTTCTTATTGCATATCATTTTGT
TGTAATACAGAAAGCAGCATTTTTAAATGTCCGTGTTAAGAATTGGCCCACTGGTACCAACTCA
CCTCTATTTTGTCAGTTCATAGTTGAAGATTTTGTTTTATTTCAAAAACAAAGTACATTTTTGA
AATAATGTTTCAGAATAAAATAATCTCACTTTTAAGTGATCCATTTTAAAATTTGTAATTCAAT
AAAGTTTTTTTTGTTGTTAAACATA

hide sequence

RefSeq Acc Id:

NM_201437 ⟹ NP_958845

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	53,966,556 - 54,022,448 (-)	NCBI
GRCh37	8	54,879,116 - 54,935,008 (-)	NCBI
Build 36	8	55,041,669 - 55,097,561 (-)	NCBI Archive
HuRef	8	50,347,342 - 50,402,986 (-)	NCBI
CHM1_1	8	54,930,629 - 54,986,642 (-)	NCBI
T2T-CHM13v2.0	8	54,343,951 - 54,399,849 (-)	NCBI

Sequence:

show sequence

AGCCGGAAGCCACGCCTGCCCACTAGCCCGACGCCCGCCTGGCGGGAACATGGGCTCGCCCCTC
ACCAGCGATCTGCAGTCAGTTGGTAGCGCCTGCACGTCGCGCGCGGTGTTCGATTGTCGCTGCC
TGGGGAGGAGGAGCCGGAGCCGCCGCCGCCGCCGCCGCCGCCGCGGGCTTCGTTCGTAAGGAAG
GGGGCCTAGGCCCGGGCCTGCGGTGGTGGGGGTTGCTGCGCGCCGGGGGTCGCTCCTGCTGTGT
CTTCCGCTCCAGCTTCGCCCACTTCCCCTTGCCAGCGGGGTGGGCGCGGAGAAGACCTGCCGGA
GCCATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACG
CGTCCACAAGAATCGGAATGTCAGTTAATGCTATTCGCAAGCAGAGTACAGATGAGGAAGTTAC
ATCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCATCAACTGAGAAA
GACCTTGACGAAAAGAAGAAAGAACCTGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGAAG
AAAGTACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGATACTTATGT
TTCATCCTTTCCTCGGGCACCAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGCTT
GCTGCAGCTCTTCGAACAGGGGATGACTACATTGCAATTGGAGCTGATGAGGAAGAATTAGGAT
CTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATACAAAAATAGAGT
ACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCTGT
GGGAATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTGA
AAGAGATGCGGAAAAACTTGACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTGG
GACCCAGACTGACTTGTTCACATGTGGCAAATGTAAAAAGAAGAATTGCACTTACACACAGGTA
CAAACCCGTAGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAATGTGGAAATCGAT
GGAAGTTCTGTTGAGTTGGAAGAATTGGCAAAATATCTGGACCATTAAGAAAACGGATTTTGTA
ACTAGCTTTAAACTAGGCCAAGCAACTAGTTTTCCTGCAAATCAAATTTTTAAAGCAACTTGGG
TTAGACTTTGTTTTTGACCTAACATCCCTTCCTTAAATGCCTTCTGTAGTTTCAGATCAGTAGG
GAGACCATATAATAATTTTATGGTACCTGTTTCAAAACATATTTTTTCTGTTTTTATAAGTAAG
TTGATATTAATTAAACTCTTGGCAATATTTCTTCTTTCTTAAAGGAAAATATACCTTAACTTTT
TTTCTTTTACACTGTGAAACATACACAGTAGAAATTCTGTTACTCTCTGTTATTAATACATAAA
TGAAAATACATTTTTTTCCATATTGGCATGTAGCTACAAATATTAAAGGAGGAGAAAAGGTAAT
ATAATTTTAGGTTTACCAAATATGGTGTGTATTCAAATAATACTTGACCAGCTTATCTAAAATG
TACATAATTTTGAGGTAGCTTATGAATTTGATTTTAATTATTATGTTCACAAGCTTGGAATATT
AGATATTATTTTGCATCTGTAACTAACCGTGATCATCATTTCTTGTAATTTCTTGTACATGTAT
ATTACTTGTTCTTAATAGATTTTTGGAAACAAGACTTTATTGAGATCAGTTTGGTTTTCCTGTT
AATTTACCTGTTTGACTTTATAATGTGTTTTAGTTTTGCAGAAGAACACTGTTGTAGTTTAGAA
GGCTTTTCATAAATCCCCTCATAGGCAAAGATGAAAACTTCCCACTATTTTTTTCCCCTCTTAG
GAAGACATACTGGAAAGAAAATGTTTAGCATCTTAGTGTAGTATAGCTATTGTAAACAGTTCAT
GACTAGATTTTGATTCGGAAATCTATACTGACCAAGGATTAATCTTAAGGATTGTATAATTCAT
TAAAGCTGTGGTCTTTCCATGTGGAGACTGATAGAAAATAATTTTGTCCCAAGTCTTATTTGCT
GACTTTTTCTGTCATGAGTGAGATTGTTGAACAAACTGAATATATGGGCTATAGCAAGTAGCTT
TACAGTACAGATCTTACAATTAAGTTTTGCTTTTGTTAAAGTGTGTACCATTTTTTCTGTTTGG
AGTAAGACAAAAATTGTTTTGACATAGGTTCCCTAGGGTACACTTGCTCTAGCATACTTTAAAG
GCCACTGTTGCAAAGTCTACATTTTATGCTGAATCTGCATTCTGTCAGGCACCCGTAGAAAGAC
CTCAGTACATGCTTTGCACTCTCCTTTGCTCCCTTTTTCCAATTTCTTATTGCATATCATTTTG
TTGTAATACAGAAAGCAGCATTTTTAAATGTCCGTGTTAAGAATTGGCCCACTGGTACCAACTC
ACCTCTATTTTGTCAGTTCATAGTTGAAGATTTTGTTTTATTTCAAAAACAAAGTACATTTTTG
AAATAATGTTTCAGAATAAAATAATCTCACTTTTAAGTGATCCATTTTAAAATTTGTAATTCAA
TAAAGTTTTTTTTGTTGTTAAACATA

hide sequence

RefSeq Acc Id:

NR_109901

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	53,966,556 - 54,022,448 (-)	NCBI
HuRef	8	50,347,342 - 50,402,986 (-)	NCBI
CHM1_1	8	54,930,629 - 54,986,642 (-)	NCBI
T2T-CHM13v2.0	8	54,343,951 - 54,399,849 (-)	NCBI

Sequence:

show sequence

AGCCGGAAGCCACGCCTGCCCACTAGCCCGACGCCCGCCTGGCGGGAACATGGGCTCGCCCCTC
ACCAGCGATCTGCAGTCAGTTGGTAGCGCCTGCACGTCGCGCGCGGTGTTCGATTGTCGCTGCC
TGGGGAGGAGGAGCCGGAGCCGCCGCCGCCGCCGCCGCCGCCGCGGGCTTCGTTCGTAAGGAAG
GGGGCCTAGGCCCGGGCCTGCGGTGGTGGGGGTTGCTGCGCGCCGGGGGTCGCTCCTGCTGTGT
CTTCCGCTCCAGCTTCGCCCACTTCCCCTTGCCAGCGGGGTGGGCGCGGAGAAGACCTGCCGGA
GCCATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACG
CGGCTGGAGCATTGGATTTGCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACTGCA
GATTTAGTGGCTACCTTGAGATCATCTTGGCAAAAACTCATGAGTGATCACAAAGGAGACTTTT
CTTCTGGAGCACACCAAATCTGCTTGTTTCCTGTGATGTTAACAGTGTCTCTTGATCTCAGTAC
TCATTCCTTTCTGCTTTTCCATCAGTGTGCAGCTGACCCCTAAGGCTGCTTAATGCACTCTCCA
CCTTTCCAAGTCCACAAGAATCGGAATGTCAGTTAATGCTATTCGCAAGCAGAGTACAGATGAG
GAAGTTACATCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCATCAA
CTGAGAAAGACCTTGACGAAAAGAAGAAAGAACCTGCAATTACATCGCAGAACAGCCCTGAGGC
AAGAGAAGAAAGTACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGAT
ACTTATGTTTCATCCTTTCCTCGGGCACCAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGG
AGATGCTTGCTGCAGCTCTTCGAACAGGGGATGACTACATTGCAATTGGAGCTGATGAGGAAGA
ATTAGGATCTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATACAAA
AATAGAGTACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATG
TCCTCTGTGGGAATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGA
TGAGCTGAAAGAGATGCGGAAAAACTTGACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAG
ACTGGTGGGACCCAGACTGACTTGTTCACATGTGGCAAATGTAAAAAGAAGAATTGCACTTACA
CACAGTGTCTTGCACTGTACTCACCCCTGTTCATTTGATGAGATGAGGCGAAGTGAATGATGTA
GGCATTGTGACTAAGTGTTAGGCTGCTGTTGACCTTCTGATGATCCATCAGAAGGAGGCTCATC
TGCTTCAGGTGGTCCTGCCTCATCGAGCCCTGATGATGTGGATGACTAATGGGTACAAACCCGT
AGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAATGTGGAAATCGATGGAAGTTCT
GTTGAGTTGGAAGAATTGGCAAAATATCTGGACCATTAAGAAAACGGATTTTGTAACTAGCTTT
AAACTAGGCCAAGCAACTAGTTTTCCTGCAAATCAAATTTTTAAAGCAACTTGGGTTAGACTTT
GTTTTTGACCTAACATCCCTTCCTTAAATGCCTTCTGTAGTTTCAGATCAGTAGGGAGACCATA
TAATAATTTTATGGTACCTGTTTCAAAACATATTTTTTCTGTTTTTATAAGTAAGTTGATATTA
ATTAAACTCTTGGCAATATTTCTTCTTTCTTAAAGGAAAATATACCTTAACTTTTTTTCTTTTA
CACTGTGAAACATACACAGTAGAAATTCTGTTACTCTCTGTTATTAATACATAAATGAAAATAC
ATTTTTTTCCATATTGGCATGTAGCTACAAATATTAAAGGAGGAGAAAAGGTAATATAATTTTA
GGTTTACCAAATATGGTGTGTATTCAAATAATACTTGACCAGCTTATCTAAAATGTACATAATT
TTGAGGTAGCTTATGAATTTGATTTTAATTATTATGTTCACAAGCTTGGAATATTAGATATTAT
TTTGCATCTGTAACTAACCGTGATCATCATTTCTTGTAATTTCTTGTACATGTATATTACTTGT
TCTTAATAGATTTTTGGAAACAAGACTTTATTGAGATCAGTTTGGTTTTCCTGTTAATTTACCT
GTTTGACTTTATAATGTGTTTTAGTTTTGCAGAAGAACACTGTTGTAGTTTAGAAGGCTTTTCA
TAAATCCCCTCATAGGCAAAGATGAAAACTTCCCACTATTTTTTTCCCCTCTTAGGAAGACATA
CTGGAAAGAAAATGTTTAGCATCTTAGTGTAGTATAGCTATTGTAAACAGTTCATGACTAGATT
TTGATTCGGAAATCTATACTGACCAAGGATTAATCTTAAGGATTGTATAATTCATTAAAGCTGT
GGTCTTTCCATGTGGAGACTGATAGAAAATAATTTTGTCCCAAGTCTTATTTGCTGACTTTTTC
TGTCATGAGTGAGATTGTTGAACAAACTGAATATATGGGCTATAGCAAGTAGCTTTACAGTACA
GATCTTACAATTAAGTTTTGCTTTTGTTAAAGTGTGTACCATTTTTTCTGTTTGGAGTAAGACA
AAAATTGTTTTGACATAGGTTCCCTAGGGTACACTTGCTCTAGCATACTTTAAAGGCCACTGTT
GCAAAGTCTACATTTTATGCTGAATCTGCATTCTGTCAGGCACCCGTAGAAAGACCTCAGTACA
TGCTTTGCACTCTCCTTTGCTCCCTTTTTCCAATTTCTTATTGCATATCATTTTGTTGTAATAC
AGAAAGCAGCATTTTTAAATGTCCGTGTTAAGAATTGGCCCACTGGTACCAACTCACCTCTATT
TTGTCAGTTCATAGTTGAAGATTTTGTTTTATTTCAAAAACAAAGTACATTTTTGAAATAATGT
TTCAGAATAAAATAATCTCACTTTTAAGTGATCCATTTTAAAATTTGTAATTCAATAAAGTTTT
TTTTGTTGTTAAACATA

hide sequence

RefSeq Acc Id:

NR_109902

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	53,966,556 - 54,022,448 (-)	NCBI
HuRef	8	50,347,342 - 50,402,986 (-)	NCBI
CHM1_1	8	54,930,629 - 54,986,642 (-)	NCBI
T2T-CHM13v2.0	8	54,343,951 - 54,399,849 (-)	NCBI

Sequence:

show sequence

AGCCGGAAGCCACGCCTGCCCACTAGCCCGACGCCCGCCTGGCGGGAACATGGGCTCGCCCCTC
ACCAGCGATCTGCAGTCAGTTGGTAGCGCCTGCACGTCGCGCGCGGTGTTCGATTGTCGCTGCC
TGGGGAGGAGGAGCCGGAGCCGCCGCCGCCGCCGCCGCCGCCGCGGGCTTCGTTCGTAAGGAAG
GGGGCCTAGGCCCGGGCCTGCGGTGGTGGGGGTTGCTGCGCGCCGGGGGTCGCTCCTGCTGTGT
CTTCCGCTCCAGCTTCGCCCACTTCCCCTTGCCAGCGGGGTGGGCGCGGAGAAGACCTGCCGGA
GCCATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACG
CGGCTGGAGCATTGGATTTGCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACTGCA
GGAAATGGCTAGTGATGAGCTGAAAGAGATGCGGAAAAACTTGACCAAAGAAGCCATCAGAGAG
CATCAGATGGCCAAGACTGGTGGGACCCAGACTGACTTGTTCACATGTGGCAAATGTAAAAAGA
AGAATTGCACTTACACACAGGTACAAACCCGTAGTGCTGATGAACCAATGACAACATTTGTTGT
CTGTAATGAATGTGGAAATCGATGGAAGTTCTGTTGAGTTGGAAGAATTGGCAAAATATCTGGA
CCATTAAGAAAACGGATTTTGTAACTAGCTTTAAACTAGGCCAAGCAACTAGTTTTCCTGCAAA
TCAAATTTTTAAAGCAACTTGGGTTAGACTTTGTTTTTGACCTAACATCCCTTCCTTAAATGCC
TTCTGTAGTTTCAGATCAGTAGGGAGACCATATAATAATTTTATGGTACCTGTTTCAAAACATA
TTTTTTCTGTTTTTATAAGTAAGTTGATATTAATTAAACTCTTGGCAATATTTCTTCTTTCTTA
AAGGAAAATATACCTTAACTTTTTTTCTTTTACACTGTGAAACATACACAGTAGAAATTCTGTT
ACTCTCTGTTATTAATACATAAATGAAAATACATTTTTTTCCATATTGGCATGTAGCTACAAAT
ATTAAAGGAGGAGAAAAGGTAATATAATTTTAGGTTTACCAAATATGGTGTGTATTCAAATAAT
ACTTGACCAGCTTATCTAAAATGTACATAATTTTGAGGTAGCTTATGAATTTGATTTTAATTAT
TATGTTCACAAGCTTGGAATATTAGATATTATTTTGCATCTGTAACTAACCGTGATCATCATTT
CTTGTAATTTCTTGTACATGTATATTACTTGTTCTTAATAGATTTTTGGAAACAAGACTTTATT
GAGATCAGTTTGGTTTTCCTGTTAATTTACCTGTTTGACTTTATAATGTGTTTTAGTTTTGCAG
AAGAACACTGTTGTAGTTTAGAAGGCTTTTCATAAATCCCCTCATAGGCAAAGATGAAAACTTC
CCACTATTTTTTTCCCCTCTTAGGAAGACATACTGGAAAGAAAATGTTTAGCATCTTAGTGTAG
TATAGCTATTGTAAACAGTTCATGACTAGATTTTGATTCGGAAATCTATACTGACCAAGGATTA
ATCTTAAGGATTGTATAATTCATTAAAGCTGTGGTCTTTCCATGTGGAGACTGATAGAAAATAA
TTTTGTCCCAAGTCTTATTTGCTGACTTTTTCTGTCATGAGTGAGATTGTTGAACAAACTGAAT
ATATGGGCTATAGCAAGTAGCTTTACAGTACAGATCTTACAATTAAGTTTTGCTTTTGTTAAAG
TGTGTACCATTTTTTCTGTTTGGAGTAAGACAAAAATTGTTTTGACATAGGTTCCCTAGGGTAC
ACTTGCTCTAGCATACTTTAAAGGCCACTGTTGCAAAGTCTACATTTTATGCTGAATCTGCATT
CTGTCAGGCACCCGTAGAAAGACCTCAGTACATGCTTTGCACTCTCCTTTGCTCCCTTTTTCCA
ATTTCTTATTGCATATCATTTTGTTGTAATACAGAAAGCAGCATTTTTAAATGTCCGTGTTAAG
AATTGGCCCACTGGTACCAACTCACCTCTATTTTGTCAGTTCATAGTTGAAGATTTTGTTTTAT
TTCAAAAACAAAGTACATTTTTGAAATAATGTTTCAGAATAAAATAATCTCACTTTTAAGTGAT
CCATTTTAAAATTTGTAATTCAATAAAGTTTTTTTTGTTGTTAAACATA

hide sequence

RefSeq Acc Id:

XM_006716467 ⟹ XP_006716530

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	53,966,556 - 54,022,448 (-)	NCBI

Sequence:

show sequence

GAGCCGGAGCCGCCGCCGCCGCCGCCGCCGCCGCGGGCTTCGTTCGTAAGGAAGGGGGCCTAGG
CCCGGGCCTGCGGTGGTGGGGGTTGCTGCGCGCCGGGGGTCGCTCCTGCTGTGTCTTCCGCTCC
AGCTTCGCCCACTTCCCCTTGCCAGCGGGGTGGGCGCGGAGAAGACCTGCCGGAGCCATGGAGG
ACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGGCTGGAGC
ATTGGATTTGCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACTGCAGTGTGCAGCT
GACCCCTAAGGCTGCTTAATGCACTCTCCACCTTTCCAAGTCCACAAGAATCGGAATGTCAGTT
AATGCTATTCGCAAGCAGAGTACAGATGAGGAAGTTACATCTTTGGCAAAGTCTCTCATCAAAT
CCTGGAAAAAATTATTAGATGGGCCATCAACTGAGAAAGACCTTGACGAAAAGAAGAAAGAACC
TGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGAAGAAAGTACTTCCAGCGGCAATGTAAGC
AACAGAAAGGATGAGACAAATGCTCGAGATACTTATGTTTCATCCTTTCCTCGGGCACCAAGCA
CTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGCTTGCTGCAGCTCTTCGAACAGGGGATGA
CTACATTGCAATTGGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAAGAAGCTATATATCAA
GAAATAAGGAATACAGACATGAAATACAAAAATAGAGTACGAAGTAGGATATCAAATCTTAAAG
ATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCTGTGGGAATATTCCTCCTGACTTATTTGC
TAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTGAAAGAGATGCGGAAAAACTTGACCAAA
GAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTGGGACCCAGACTGACTTGTTCACATGTG
GCAAATGTAAAAAGAAGAATTGCACTTACACACAGGTACAAACCCGTAGTGCTGATGAACCAAT
GACAACATTTGTTGTCTGTAATGAATGTGGAAATCGATGGAAGTTCTGTTGAGTTGGAAGAATT
GGCAAAATATCTGGACCATTAAGAAAACGGATTTTGTAACTAGCTTTAAACTAGGCCAAGCAAC
TAGTTTTCCTGCAAATCAAATTTTTAAAGCAACTTGGGTTAGACTTTGTTTTTGACCTAACATC
CCTTCCTTAAATGCCTTCTGTAGTTTCAGATCAGTAGGGAGACCATATAATAATTTTATGGTAC
CTGTTTCAAAACATATTTTTTCTGTTTTTATAAGTAAGTTGATATTAATTAAACTCTTGGCAAT
ATTTCTTCTTTCTTAAAGGAAAATATACCTTAACTTTTTTTCTTTTACACTGTGAAACATACAC
AGTAGAAATTCTGTTACTCTCTGTTATTAATACATAAATGAAAATACATTTTTTTCCATATTGG
CATGTAGCTACAAATATTAAAGGAGGAGAAAAGGTAATATAATTTTAGGTTTACCAAATATGGT
GTGTATTCAAATAATACTTGACCAGCTTATCTAAAATGTACATAATTTTGAGGTAGCTTATGAA
TTTGATTTTAATTATTATGTTCACAAGCTTGGAATATTAGATATTATTTTGCATCTGTAACTAA
CCGTGATCATCATTTCTTGTAATTTCTTGTACATGTATATTACTTGTTCTTAATAGATTTTTGG
AAACAAGACTTTATTGAGATCAGTTTGGTTTTCCTGTTAATTTACCTGTTTGACTTTATAATGT
GTTTTAGTTTTGCAGAAGAACACTGTTGTAGTTTAGAAGGCTTTTCATAAATCCCCTCATAGGC
AAAGATGAAAACTTCCCACTATTTTTTTCCCCTCTTAGGAAGACATACTGGAAAGAAAATGTTT
AGCATCTTAGTGTAGTATAGCTATTGTAAACAGTTCATGACTAGATTTTGATTCGGAAATCTAT
ACTGACCAAGGATTAATCTTAAGGATTGTATAATTCATTAAAGCTGTGGTCTTTCCATGTGGAG
ACTGATAGAAAATAATTTTGTCCCAAGTCTTATTTGCTGACTTTTTCTGTCATGAGTGAGATTG
TTGAACAAACTGAATATATGGGCTATAGCAAGTAGCTTTACAGTACAGATCTTACAATTAAGTT
TTGCTTTTGTTAAAGTGTGTACCATTTTTTCTGTTTGGAGTAAGACAAAAATTGTTTTGACATA
GGTTCCCTAGGGTACACTTGCTCTAGCATACTTTAAAGGCCACTGTTGCAAAGTCTACATTTTA
TGCTGAATCTGCATTCTGTCAGGCACCCGTAGAAAGACCTCAGTACATGCTTTGCACTCTCCTT
TGCTCCCTTTTTCCAATTTCTTATTGCATATCATTTTGTTGTAATACAGAAAGCAGCATTTTTA
AATGTCCGTGTTAAGAATTGGCCCACTGGTACCAACTCACCTCTATTTTGTCAGTTCATAGTTG
AAGATTTTGTTTTATTTCAAAAACAAAGTACATTTTTGAAATAATGTTTCAGAATAAAATAATC
TCACTTTTAAGTGATCCATTTTAAAATTTGTAATTCAATAAAGTTTTTTTTGTTGTTAAACATA

hide sequence

RefSeq Acc Id:

XM_011517578 ⟹ XP_011515880

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	53,966,556 - 54,021,980 (-)	NCBI

Sequence:

show sequence

CAGTCCCTGCTCGCTGGTGCCGTGTAATAAACCTAATCGATTTAGGGATTAGGGCACGCTCTCC
GTTGACTTTAAACTTTCGTGCTAGTAAAACCTTGGCAATTTAGCTTAGGAATTGAAGCGTAGAA
AGTCCTCAGAACTTGAAAGAATGGAGTCTTCCGTGATCCGTGGCCAACATCTAGAAAGAGCATC
AAATAGAGGCTTGTGATCGGTATTAGACATCGGGCTGGTAAAATGTAAAACTTCTGTGTCTTAT
TTTTGAAGAGGGCTGAACGTCCGCCTGGTTATCTCAACTGTGCTACATGTTTGCTTAGCGATTA
AAAAGGCTGGAGCATTGGATTTGCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACT
GCAGTCCACAAGAATCGGAATGTCAGTTAATGCTATTCGCAAGCAGAGTACAGATGAGGAAGTT
ACATCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCATCAACTGAGA
AAGACCTTGACGAAAAGAAGAAAGAACCTGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGA
AGAAAGTACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGATACTTAT
GTTTCATCCTTTCCTCGGGCACCAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGC
TTGCTGCAGCTCTTCGAACAGGGGATGACTACATTGCAATTGGAGCTGATGAGGAAGAATTAGG
ATCTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATACAAAAATAGA
GTACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCT
GTGGGAATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCT
GAAAGAGATGCGGAAAAACTTGACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGT
GGGACCCAGACTGACTTGTTCACATGTGGCAAATGTAAAAAGAAGAATTGCACTTACACACAGG
TACAAACCCGTAGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAATGTGGAAATCG
ATGGAAGTTCTGTTGAGTTGGAAGAATTGGCAAAATATCTGGACCATTAAGAAAACGGATTTTG
TAACTAGCTTTAAACTAGGCCAAGCAACTAGTTTTCCTGCAAATCAAATTTTTAAAGCAACTTG
GGTTAGACTTTGTTTTTGACCTAACATCCCTTCCTTAAATGCCTTCTGTAGTTTCAGATCAGTA
GGGAGACCATATAATAATTTTATGGTACCTGTTTCAAAACATATTTTTTCTGTTTTTATAAGTA
AGTTGATATTAATTAAACTCTTGGCAATATTTCTTCTTTCTTAAAGGAAAATATACCTTAACTT
TTTTTCTTTTACACTGTGAAACATACACAGTAGAAATTCTGTTACTCTCTGTTATTAATACATA
AATGAAAATACATTTTTTTCCATATTGGCATGTAGCTACAAATATTAAAGGAGGAGAAAAGGTA
ATATAATTTTAGGTTTACCAAATATGGTGTGTATTCAAATAATACTTGACCAGCTTATCTAAAA
TGTACATAATTTTGAGGTAGCTTATGAATTTGATTTTAATTATTATGTTCACAAGCTTGGAATA
TTAGATATTATTTTGCATCTGTAACTAACCGTGATCATCATTTCTTGTAATTTCTTGTACATGT
ATATTACTTGTTCTTAATAGATTTTTGGAAACAAGACTTTATTGAGATCAGTTTGGTTTTCCTG
TTAATTTACCTGTTTGACTTTATAATGTGTTTTAGTTTTGCAGAAGAACACTGTTGTAGTTTAG
AAGGCTTTTCATAAATCCCCTCATAGGCAAAGATGAAAACTTCCCACTATTTTTTTCCCCTCTT
AGGAAGACATACTGGAAAGAAAATGTTTAGCATCTTAGTGTAGTATAGCTATTGTAAACAGTTC
ATGACTAGATTTTGATTCGGAAATCTATACTGACCAAGGATTAATCTTAAGGATTGTATAATTC
ATTAAAGCTGTGGTCTTTCCATGTGGAGACTGATAGAAAATAATTTTGTCCCAAGTCTTATTTG
CTGACTTTTTCTGTCATGAGTGAGATTGTTGAACAAACTGAATATATGGGCTATAGCAAGTAGC
TTTACAGTACAGATCTTACAATTAAGTTTTGCTTTTGTTAAAGTGTGTACCATTTTTTCTGTTT
GGAGTAAGACAAAAATTGTTTTGACATAGGTTCCCTAGGGTACACTTGCTCTAGCATACTTTAA
AGGCCACTGTTGCAAAGTCTACATTTTATGCTGAATCTGCATTCTGTCAGGCACCCGTAGAAAG
ACCTCAGTACATGCTTTGCACTCTCCTTTGCTCCCTTTTTCCAATTTCTTATTGCATATCATTT
TGTTGTAATACAGAAAGCAGCATTTTTAAATGTCCGTGTTAAGAATTGGCCCACTGGTACCAAC
TCACCTCTATTTTGTCAGTTCATAGTTGAAGATTTTGTTTTATTTCAAAAACAAAGTACATTTT
TGAAATAATGTTTCAGAATAAAATAATCTCACTTTTAAGTGATCCATTTTAAAATTTGTAATTC
AATAAAGTTTTTTTTGTTGTTAAACATA

hide sequence

RefSeq Acc Id:

XM_054361110 ⟹ XP_054217085

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	8	54,343,951 - 54,399,308 (-)	NCBI

RefSeq Acc Id:

XM_054361111 ⟹ XP_054217086

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	8	54,343,951 - 54,399,849 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_006747	(Get FASTA)	NCBI Sequence Viewer
	NP_958845	(Get FASTA)	NCBI Sequence Viewer
	XP_006716530	(Get FASTA)	NCBI Sequence Viewer
	XP_011515880	(Get FASTA)	NCBI Sequence Viewer
	XP_054217085	(Get FASTA)	NCBI Sequence Viewer
	XP_054217086	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA61138	(Get FASTA)	NCBI Sequence Viewer
	AAH72460	(Get FASTA)	NCBI Sequence Viewer
	AAV38798	(Get FASTA)	NCBI Sequence Viewer
	ADO22470	(Get FASTA)	NCBI Sequence Viewer
	BAF83143	(Get FASTA)	NCBI Sequence Viewer
	BAH12657	(Get FASTA)	NCBI Sequence Viewer
	BAH12696	(Get FASTA)	NCBI Sequence Viewer
	CAA40484	(Get FASTA)	NCBI Sequence Viewer
	CAA44470	(Get FASTA)	NCBI Sequence Viewer
	CAG47017	(Get FASTA)	NCBI Sequence Viewer
	EAW86739	(Get FASTA)	NCBI Sequence Viewer
	EAW86740	(Get FASTA)	NCBI Sequence Viewer
	EAW86741	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000395483
	ENSP00000395483.2
	ENSP00000428370.1
	ENSP00000428426
	ENSP00000428426.2
	ENSP00000428868.1
	ENSP00000429182.1
	ENSP00000429192.1
	ENSP00000430450.1
GenBank Protein	P23193	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_958845 ⟸ NM_201437
- Peptide Label:	isoform 2
- UniProtKB:	B7Z4W0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDEVVRFAKKMDKMVQKKNASTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKD LDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLA AALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCG NIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQ TRSADEPMTTFVVCNECGNRWKFC hide sequence

RefSeq Acc Id:	NP_006747 ⟸ NM_006756
- Peptide Label:	isoform 1
- UniProtKB:	Q15563 (UniProtKB/Swiss-Prot), A8K339 (UniProtKB/Swiss-Prot), A6NF25 (UniProtKB/Swiss-Prot), Q6FG87 (UniProtKB/Swiss-Prot), P23193 (UniProtKB/Swiss-Prot), B7Z4W0 (UniProtKB/TrEMBL), A0A384MTX4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTS LAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVS SFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVR SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC hide sequence

RefSeq Acc Id:	XP_006716530 ⟸ XM_006716467
- Peptide Label:	isoform X2
- UniProtKB:	B7Z4W0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSG NVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEA IYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKN LTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC hide sequence

RefSeq Acc Id:	XP_011515880 ⟸ XM_011517578
- Peptide Label:	isoform X1
- UniProtKB:	B7Z4W0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQN SPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGA DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEE MASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC NECGNRWKFC hide sequence

RefSeq Acc Id:

ENSP00000429182 ⟸ ENST00000518784

RefSeq Acc Id:

ENSP00000428868 ⟸ ENST00000518310

RefSeq Acc Id:

ENSP00000430450 ⟸ ENST00000519704

RefSeq Acc Id:

ENSP00000492551 ⟸ ENST00000638322

RefSeq Acc Id:

ENSP00000428370 ⟸ ENST00000520534

RefSeq Acc Id:

ENSP00000428426 ⟸ ENST00000521604

RefSeq Acc Id:

ENSP00000429192 ⟸ ENST00000522635

RefSeq Acc Id:

ENSP00000491370 ⟸ ENST00000640873

RefSeq Acc Id:

ENSP00000492389 ⟸ ENST00000640041

RefSeq Acc Id:

ENSP00000491445 ⟸ ENST00000640382

RefSeq Acc Id:

ENSP00000395483 ⟸ ENST00000396401

RefSeq Acc Id:	XP_054217086 ⟸ XM_054361111
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_054217085 ⟸ XM_054361110
- Peptide Label:	isoform X1

Protein Domains

TFIIS central TFIIS N-terminal TFIIS-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P23193-F1-model_v2	AlphaFold	P23193	1-301	view protein structure

Promoters

RGD ID:

7213309

Promoter ID:

EPDNEW_H12400

Type:

initiation region

Name:

TCEA1_1

Description:

transcription elongation factor A1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H12401

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	54,022,287 - 54,022,347	EPDNEW

RGD ID:

7213311

Promoter ID:

EPDNEW_H12401

Type:

initiation region

Name:

TCEA1_2

Description:

transcription elongation factor A1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H12400

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	8	54,022,448 - 54,022,508	EPDNEW

RGD ID:

6806684

Promoter ID:

HG_KWN:61296

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000360389, ENST00000399633, NM_006756, NM_201437, UC003XRW.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	8	55,097,349 - 55,097,849 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:11612	AgrOrtholog
COSMIC	TCEA1	COSMIC
Ensembl Genes	ENSG00000187735	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000396401	ENTREZGENE
	ENST00000396401.7	UniProtKB/Swiss-Prot
	ENST00000518310.5	UniProtKB/TrEMBL
	ENST00000518784.5	UniProtKB/TrEMBL
	ENST00000519704.1	UniProtKB/TrEMBL
	ENST00000520534.5	UniProtKB/TrEMBL
	ENST00000521086	ENTREZGENE
	ENST00000521604	ENTREZGENE
	ENST00000521604.7	UniProtKB/Swiss-Prot
	ENST00000522635.5	UniProtKB/TrEMBL
Gene3D-CATH	1.10.472.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.930.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.20.25.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx	ENSG00000187735	GTEx
HGNC ID	HGNC:11612	ENTREZGENE
Human Proteome Map	TCEA1	Human Proteome Map
InterPro	TF_IIS-typ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS/CRSP70_N_sub	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS/LEDGF_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_cen_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_cen_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFSII	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_TFIIS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:6917	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	6917	ENTREZGENE
OMIM	601425	OMIM
PANTHER	TRANSCRIPTION ELONGATION FACTOR A PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Med26	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA36371	PharmGKB
PIRSF	TF_IIS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	TFIIS_CENTRAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_TFIIS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_TFIIS_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	TFS2M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFS2N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2C2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF46942	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47676	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Zinc beta-ribbon	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A384MTX4	ENTREZGENE, UniProtKB/TrEMBL
	A6NF25	ENTREZGENE
	A8K339	ENTREZGENE
	B7Z4S1_HUMAN	UniProtKB/TrEMBL
	B7Z4W0	ENTREZGENE, UniProtKB/TrEMBL
	E5RFI1_HUMAN	UniProtKB/TrEMBL
	E5RIS7_HUMAN	UniProtKB/TrEMBL
	E5RJ93_HUMAN	UniProtKB/TrEMBL
	E5RK46_HUMAN	UniProtKB/TrEMBL
	P23193	ENTREZGENE
	Q15563	ENTREZGENE
	Q6FG87	ENTREZGENE
	TCEA1_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	A6NF25	UniProtKB/Swiss-Prot
	A8K339	UniProtKB/Swiss-Prot
	Q15563	UniProtKB/Swiss-Prot
	Q6FG87	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-18	TCEA1	transcription elongation factor A1		transcription elongation factor A (SII), 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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