Ahcyl1 (S-adenosylhomocysteine hydrolase-like 1) - Rat Genome Database

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Gene: Ahcyl1 (S-adenosylhomocysteine hydrolase-like 1) Mus musculus
Analyze
Symbol: Ahcyl1
Name: S-adenosylhomocysteine hydrolase-like 1
RGD ID: 1320281
MGI Page MGI
Description: Enables enzyme regulator activity. Involved in epithelial fluid transport. Acts upstream of or within protein export from nucleus; regulation of mRNA 3'-end processing; and regulation of monoatomic ion transport. Located in cytosol and intracellular membrane-bounded organelle. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human AHCYL1 (adenosylhomocysteinase like 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110034F20Rik; AA409031; AA414901; adoHcyase 2; Ahcy-; Ahcy-rs3; DC; DCAL; IP3R binding protein released with inositol 1,4,5-trisphosphate; IP3R-binding protein released with inositol 1,4,5-trisphosphate; IR; Irbit; putative adenosylhomocysteinase 2; S-adenosyl-L-homocysteine hydrolase 2; S-adenosylhomocysteine hydrolase, related sequence 3; S-adenosylhomocysteine hydrolase-like protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,570,436 - 107,603,876 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3107,570,434 - 107,603,876 (-)EnsemblGRCm39 Ensembl
GRCm383107,663,120 - 107,696,560 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,663,118 - 107,696,560 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,466,038 - 107,499,466 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363107,792,562 - 107,824,565 (-)NCBIMGSCv36mm8
Celera3109,995,466 - 110,028,894 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3',5'-cyclic AMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
7,12-dimethyltetraphene  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
coumestrol  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethyl maleate  (EXP)
ethanol  (EXP)
etoposide  (ISO)
folic acid  (EXP)
genistein  (ISO)
gentamycin  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
mitomycin C  (ISO)
mitoxantrone  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (EXP)
phenobarbital  (EXP,ISO)
poly(I:C)  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
titanium dioxide  (EXP)
trichloroethene  (EXP)
triptonide  (EXP)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11904675   PMID:12477932   PMID:12520002   PMID:12525476   PMID:14681479   PMID:15489334   PMID:15572359  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16527252   PMID:16769890   PMID:17635105   PMID:17967808   PMID:18536033   PMID:18804558   PMID:19033647   PMID:19220705   PMID:19224921  
PMID:21152975   PMID:21317537   PMID:21677750   PMID:21873635   PMID:21907281   PMID:23542070   PMID:24518248   PMID:25922519   PMID:26509711   PMID:27279487   PMID:27995898   PMID:30377224  
PMID:30550785   PMID:30562941   PMID:30973865   PMID:32325033   PMID:32554809   PMID:33727633   PMID:35351819   PMID:35449600   PMID:36417873   PMID:38187761  


Genomics

Comparative Map Data
Ahcyl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,570,436 - 107,603,876 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3107,570,434 - 107,603,876 (-)EnsemblGRCm39 Ensembl
GRCm383107,663,120 - 107,696,560 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,663,118 - 107,696,560 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,466,038 - 107,499,466 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363107,792,562 - 107,824,565 (-)NCBIMGSCv36mm8
Celera3109,995,466 - 110,028,894 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
AHCYL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,984,765 - 110,023,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,984,765 - 110,023,742 (+)EnsemblGRCh38hg38GRCh38
GRCh371110,527,387 - 110,566,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,328,831 - 110,367,887 (+)NCBINCBI36Build 36hg18NCBI36
Build 341110,239,349 - 110,277,038NCBI
Celera1108,774,307 - 108,813,363 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1108,396,850 - 108,435,827 (+)NCBIHuRef
CHM1_11110,642,207 - 110,681,185 (+)NCBICHM1_1
T2T-CHM13v2.01109,994,896 - 110,033,874 (+)NCBIT2T-CHM13v2.0
Ahcyl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,982,335 - 198,016,770 (-)NCBIGRCr8
mRatBN7.22195,294,149 - 195,328,586 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,294,153 - 195,345,815 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,935,198 - 202,969,129 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,817,346 - 200,851,293 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02195,634,281 - 195,668,230 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,438,884 - 210,474,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,438,893 - 210,473,761 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,905,773 - 229,958,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,210,376 - 203,244,218 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12203,175,507 - 203,207,347 (-)NCBI
Celera2187,942,936 - 187,976,585 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ahcyl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543513,487,398 - 13,526,189 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543513,487,441 - 13,525,924 (+)NCBIChiLan1.0ChiLan1.0
AHCYL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,020,944 - 117,059,931 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,168,998 - 116,207,986 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,629,545 - 112,668,605 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,672,978 - 127,682,007 (-)NCBIpanpan1.1PanPan1.1panPan2
AHCYL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,945,224 - 41,983,917 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,946,974 - 41,985,643 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,721,127 - 44,760,149 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,276,504 - 42,315,769 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,276,513 - 42,315,756 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,009,439 - 42,048,653 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,967,628 - 42,006,639 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,405,225 - 42,441,807 (-)NCBIUU_Cfam_GSD_1.0
Ahcyl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,636,605 - 18,675,365 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367041,438,781 - 1,478,075 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367041,438,781 - 1,477,541 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHCYL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,092,907 - 110,132,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,092,976 - 110,132,826 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AHCYL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12023,519,737 - 23,559,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2023,518,567 - 23,559,850 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,899,567 - 34,939,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahcyl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,743,556 - 5,782,557 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,743,658 - 5,782,458 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ahcyl1
845 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2211
Count of miRNA genes:736
Interacting mature miRNAs:951
Transcripts:ENSMUST00000029490, ENSMUST00000137583, ENSMUST00000138091, ENSMUST00000138116, ENSMUST00000144864, ENSMUST00000151935, ENSMUST00000153530, ENSMUST00000153623
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1357599msrvh1_mmodifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 (mouse)Not determined3107376936115624197Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse

Markers in Region
R75258  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383107,664,058 - 107,664,256UniSTSGRCm38
MGSCv373107,466,976 - 107,467,174UniSTSGRCm37
Celera3109,996,404 - 109,996,602UniSTS
Cytogenetic Map3F2.3UniSTS
Whitehead_YAC3 UniSTS
RH124459  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383107,663,228 - 107,663,371UniSTSGRCm38
MGSCv373107,466,146 - 107,466,289UniSTSGRCm37
Celera3109,995,574 - 109,995,717UniSTS
Cytogenetic Map3F2.3UniSTS
RH125828  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383107,663,133 - 107,663,337UniSTSGRCm38
MGSCv373107,466,051 - 107,466,255UniSTSGRCm37
Celera3109,995,479 - 109,995,683UniSTS
Cytogenetic Map3F2.3UniSTS
Whitehead/MRC_RH6879.92UniSTS
Ahcy-rs3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383107,664,063 - 107,664,261UniSTSGRCm38
MGSCv373107,466,981 - 107,467,179UniSTSGRCm37
Celera3109,996,409 - 109,996,607UniSTS
Cytogenetic Map3F2.3UniSTS
cM Map357.0UniSTS
Ahcyl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F2.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB092504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK000547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ162898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000029490   ⟹   ENSMUSP00000029490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,570,436 - 107,603,876 (-)Ensembl
GRCm38.p6 Ensembl3107,663,120 - 107,696,560 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,572,708 - 107,574,799 (-)Ensembl
GRCm38.p6 Ensembl3107,665,392 - 107,667,483 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138091   ⟹   ENSMUSP00000117909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,570,434 - 107,585,083 (-)Ensembl
GRCm38.p6 Ensembl3107,663,118 - 107,677,767 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,579,052 - 107,603,821 (-)Ensembl
GRCm38.p6 Ensembl3107,671,736 - 107,696,505 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,571,799 - 107,577,890 (-)Ensembl
GRCm38.p6 Ensembl3107,664,483 - 107,670,574 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,575,566 - 107,576,825 (-)Ensembl
GRCm38.p6 Ensembl3107,668,250 - 107,669,509 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,571,269 - 107,572,912 (-)Ensembl
GRCm38.p6 Ensembl3107,663,953 - 107,665,596 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153623   ⟹   ENSMUSP00000121510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3107,578,464 - 107,603,279 (-)Ensembl
GRCm38.p6 Ensembl3107,671,148 - 107,695,963 (-)Ensembl
RefSeq Acc Id: NM_001357110   ⟹   NP_001344039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,537 (-)NCBI
GRCm383107,663,120 - 107,696,221 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357111   ⟹   NP_001344040
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,876 (-)NCBI
GRCm383107,663,120 - 107,696,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357112   ⟹   NP_001344041
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,372 (-)NCBI
GRCm383107,663,120 - 107,696,056 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357113   ⟹   NP_001344042
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,372 (-)NCBI
GRCm383107,663,120 - 107,696,056 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145542   ⟹   NP_663517
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,876 (-)NCBI
GRCm383107,663,120 - 107,696,560 (-)NCBI
MGSCv373107,466,038 - 107,499,466 (-)RGD
Celera3109,995,466 - 110,028,894 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030252590   ⟹   XP_030108450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,859 (-)NCBI
GRCm383107,663,127 - 107,696,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252591   ⟹   XP_030108451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,572,828 - 107,603,859 (-)NCBI
GRCm383107,665,512 - 107,696,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252592   ⟹   XP_030108452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,682 (-)NCBI
GRCm383107,663,127 - 107,696,366 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252593   ⟹   XP_030108453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393107,570,436 - 107,603,503 (-)NCBI
GRCm383107,663,127 - 107,696,182 (-)NCBI
Sequence:
RefSeq Acc Id: NP_663517   ⟸   NM_145542
- Peptide Label: isoform 1
- UniProtKB: Q80SW1 (UniProtKB/Swiss-Prot),   Q80TQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344040   ⟸   NM_001357111
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001344039   ⟸   NM_001357110
- Peptide Label: isoform 2
- UniProtKB: Q80TQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344041   ⟸   NM_001357112
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001344042   ⟸   NM_001357113
- Peptide Label: isoform 4
RefSeq Acc Id: XP_030108450   ⟸   XM_030252590
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108452   ⟸   XM_030252592
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108453   ⟸   XM_030252593
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108451   ⟸   XM_030252591
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000117909   ⟸   ENSMUST00000138091
RefSeq Acc Id: ENSMUSP00000029490   ⟸   ENSMUST00000029490
RefSeq Acc Id: ENSMUSP00000121510   ⟸   ENSMUST00000153623

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80SW1-F1-model_v2 AlphaFold Q80SW1 1-530 view protein structure

Promoters
RGD ID:6833365
Promoter ID:MM_KWN:35720
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   MEF_B6
Transcripts:OTTMUST00000072991
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363107,468,009 - 107,468,509 (-)MPROMDB
RGD ID:6833359
Promoter ID:MM_KWN:35721
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   Brain,   Kidney
Transcripts:OTTMUST00000072990
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363107,470,436 - 107,470,992 (-)MPROMDB
RGD ID:6833360
Promoter ID:MM_KWN:35722
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   MEF_B6
Transcripts:OTTMUST00000072989
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363107,472,051 - 107,472,892 (-)MPROMDB
RGD ID:6833367
Promoter ID:MM_KWN:35723
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC008QXI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363107,473,891 - 107,474,391 (-)MPROMDB
RGD ID:6833363
Promoter ID:MM_KWN:35724
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000072987
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363107,480,391 - 107,480,891 (-)MPROMDB
RGD ID:6833361
Promoter ID:MM_KWN:35725
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000072984,   OTTMUST00000072985,   OTTMUST00000072988
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363107,498,766 - 107,499,502 (-)MPROMDB
RGD ID:6882020
Promoter ID:EPDNEW_M4461
Type:single initiation site
Name:Ahcyl1_2
Description:Mus musculus S-adenosylhomocysteine hydrolase-like 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4462  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383107,670,574 - 107,670,634EPDNEW
RGD ID:6882022
Promoter ID:EPDNEW_M4462
Type:initiation region
Name:Ahcyl1_1
Description:Mus musculus S-adenosylhomocysteine hydrolase-like 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4461  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383107,696,502 - 107,696,562EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385184 AgrOrtholog
Ensembl Genes ENSMUSG00000027893 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029490 ENTREZGENE
  ENSMUST00000029490.15 UniProtKB/Swiss-Prot
  ENSMUST00000138091.8 UniProtKB/TrEMBL
  ENSMUST00000153623.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1480 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
InterPro Adenosylhomocyst_ase-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Adenosylhomocysteinase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ado_hCys_hydrolase_NAD-bd UniProtKB/Swiss-Prot
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
  S-Ado-L-homoCys_hydrolase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:229709 UniProtKB/Swiss-Prot
MGD MGI:2385184 ENTREZGENE
NCBI Gene 229709 ENTREZGENE
PANTHER PTHR23420 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S-ADENOSYLHOMOCYSTEINE HYDROLASE-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AdoHcyase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/Swiss-Prot
PhenoGen Ahcyl1 PhenoGen
PIRSF Ad_hcy_hydrolase UniProtKB/Swiss-Prot
PROSITE ADOHCYASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADOHCYASE_2 UniProtKB/Swiss-Prot
SMART AdoHcyase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/Swiss-Prot
Superfamily-SCOP Formate/glycerate dehydrogenase catalytic domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/Swiss-Prot
UniProt D3Z2Q0_MOUSE UniProtKB/TrEMBL
  F7ATQ6_MOUSE UniProtKB/TrEMBL
  Q80SW1 ENTREZGENE
  Q80TQ9 ENTREZGENE
  SAHH2_MOUSE UniProtKB/Swiss-Prot