Traip (TRAF-interacting protein) - Rat Genome Database

Name: Traip
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Traip (TRAF-interacting protein) Mus musculus

Analyze

Symbol:

Traip

Name:

TRAF-interacting protein

RGD ID:

1320271

MGI Page

MGI

Description:

Exhibits ubiquitin protein ligase activity. Involved in protein ubiquitination; regulation of gene expression; and signal transduction. Predicted to localize to nucleolus; nucleoplasm; and site of DNA damage. Is expressed in several structures, including central nervous system; genitourinary system; liver; retina layer; and spleen. Human ortholog(s) of this gene implicated in Seckel syndrome 9. Orthologous to human TRAIP (TRAF interacting protein); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4',5,5'-hexachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

E3 ubiquitin-protein ligase TRAIP; RING-type E3 ubiquitin transferase TRAIP; T; Trip

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRAIP (TRAF interacting protein)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Traip (TRAF-interacting protein)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Traip (TRAF interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRAIP (TRAF interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRAIP (TRAF interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Traip (TRAF interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRAIP (TRAF interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	LOC103227649 (TRAF interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Traip (TRAF interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Traip (TRAF-interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	TRAIP (TRAF interacting protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	traip (TRAF-interacting protein)	Alliance	DIOPT (PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	B0432.13	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup)
Drosophila melanogaster (fruit fly):	nopo	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)

Related Pseudogenes:

Gm13384

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,827,524 - 107,849,469 (+)	NCBI	GRCm39		mm39
GRCm38	9	107,950,325 - 107,972,270 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,950,136 - 107,972,270 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	107,853,294 - 107,874,599 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	107,809,064 - 107,830,369 (+)	NCBI			mm8
Celera	9	107,559,385 - 107,580,687 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	59.07	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

hepatocellular carcinoma (ISO)

microcephaly (ISO)

Seckel syndrome 9 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (ISO)

17beta-estradiol (ISO)

1H-pyrazole (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

calcitriol (ISO)

carbon nanotube (EXP)

choline (EXP)

cisplatin (ISO)

copper(II) sulfate (ISO)

dibutyl phthalate (EXP)

dichloroacetic acid (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (EXP,ISO)

furan (ISO)

geraniol (ISO)

ketamine (ISO)

L-methionine (EXP)

methotrexate (EXP)

methyl methanesulfonate (ISO)

oxaliplatin (ISO)

p-menthan-3-ol (ISO)

paracetamol (ISO)

PCB138 (EXP)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

rotenone (ISO)

silicon dioxide (EXP)

sodium arsenite (ISO)

sodium dichromate (ISO)

Soman (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

titanium dioxide (EXP)

topotecan (ISO)

trichloroethene (EXP)

trimellitic anhydride (EXP)

tungsten (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to DNA damage stimulus (ISO)

DNA repair (IEA)

negative regulation of interferon-beta production (IDA)

negative regulation of NF-kappaB transcription factor activity (IDA)

negative regulation of tumor necrosis factor-mediated signaling pathway (ISO)

protein ubiquitination (IDA,ISO)

replication fork processing (ISO)

signal transduction (IDA,IPI)

Cellular Component

chromosome (IEA)

cytoplasm (IEA)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (IEA)

site of DNA damage (ISO)

Molecular Function

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (IPI)

transferase activity (IEA)

ubiquitin protein ligase activity (IDA)

ubiquitin-protein transferase activity (IDA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal embryonic tissue morphology (IAGP)

absent proamniotic cavity (IAGP)

decreased cell proliferation (IAGP)

decreased embryo size (IAGP)

embryonic growth retardation (IAGP)

embryonic lethality between somite formation and embryo turning, complete penetrance (IAGP)

increased embryonic tissue cell apoptosis (IAGP)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGD data from the GO Consortium
3.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Persons DA, etal., Nat Genet 1999 Oct;23(2):159-65.
5.	RGD automated import pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9104814	PMID:9109628	PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12904583	PMID:15226823	PMID:15489334	PMID:15618518	PMID:16141072	PMID:16141073
PMID:17544371	PMID:17927961	PMID:18287559	PMID:22945920	PMID:27405720	PMID:31077711

Genomics

Comparative Map Data

Traip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,827,524 - 107,849,469 (+)	NCBI	GRCm39		mm39
GRCm38	9	107,950,325 - 107,972,270 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,950,136 - 107,972,270 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	107,853,294 - 107,874,599 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	107,809,064 - 107,830,369 (+)	NCBI			mm8
Celera	9	107,559,385 - 107,580,687 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	59.07	NCBI

TRAIP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	49,828,601 - 49,856,574 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	49,828,595 - 49,856,584 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	49,866,028 - 49,893,992 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,841,032 - 49,868,996 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	3	49,831,372 - 49,859,800 (-)	NCBI
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,924,552 - 49,952,533 (-)	NCBI		HuRef
CHM1_1	3	49,818,089 - 49,846,065 (-)	NCBI		CHM1_1

Traip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	116,730,170 - 116,750,528 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,730,641 - 116,750,709 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	116,085,076 - 116,104,852 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	113,220,855 - 113,240,631 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	113,240,295 - 113,260,085 (+)	NCBI
Celera	8	107,946,305 - 107,966,080 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Traip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,726,061 - 1,746,591 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,725,608 - 1,746,690 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRAIP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	50,996,647 - 51,025,243 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,996,647 - 51,025,241 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	49,760,528 - 49,789,637 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

TRAIP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	39,430,489 - 39,453,933 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	39,430,109 - 39,454,437 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Traip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936529	1,434,629 - 1,466,382 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAIP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,332,339 - 32,379,766 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	32,332,336 - 32,380,988 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,523,737 - 35,561,789 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103227649
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,220,152 - 11,262,942 (-)	NCBI
ChlSab1.1 Ensembl	22	11,233,996 - 11,262,830 (-)	Ensembl

Traip
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	3,749,183 - 3,775,062 (-)	NCBI

Position Markers

BB074618

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	107,949,508 - 107,949,644	UniSTS	GRCm38
MGSCv37	9	107,851,839 - 107,851,975	UniSTS	GRCm37
Celera	9	107,557,930 - 107,558,066	UniSTS
Cytogenetic Map	9	F1	UniSTS
Cytogenetic Map	9	F1-F2	UniSTS
Whitehead/MRC_RH	9	1111.0	UniSTS

Traip

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	6,132,211 - 6,133,179	UniSTS	GRCm38
MGSCv37	2	6,053,257 - 6,054,225	UniSTS	GRCm37
Celera	2	6,072,462 - 6,073,430	UniSTS
Cytogenetic Map	2	A1	UniSTS
Cytogenetic Map	9	F1-F2	UniSTS
cM Map	9	60.0	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13207569	Tcq13_m	total cholesterol QTL 13 (mouse)					9	59990000	109260000	Mouse
4141833	W10q13_m	weight 10 weeks QTL 13 (mouse)			Not determined			63332429	120362868	Mouse
4141545	Tailaq2_m	tail length adjusted QTL 2 (mouse)			Not determined			63332429	120362868	Mouse
1357635	Splq4_m	spleen weight QTL 4 (mouse)			Not determined		9	63332429	120362868	Mouse
1301725	Lifespan1_m	life span 1 (mouse)			Not determined		9	74368177	108368325	Mouse
1302065	El1_m	epilepsy 1 (mouse)			Not determined		9	75775364	114474379	Mouse
10054492	El7_m	epilepsy 7 (mouse)			Not determined		9	75775364	114474379	Mouse
1301407	Rapop2_m	radiation-induced apoptosis 2 (mouse)			Not determined		9	76535936	110536130	Mouse
1301192	Skts6_m	skin tumor susceptibility 6 (mouse)			Not determined		9	78640645	112640755	Mouse
10401247	Bglu14_m	blood glucose level 14 (mouse)			Not determined		9	79397810	113397888	Mouse
1301732	Char1_m	P. chabaudi malaria resistance QTL 1 (mouse)			Not determined		9	81798268	115798392	Mouse
1300884	Sluc11_m	susceptibility to lung cancer 11 (mouse)			Not determined		9	82910333	116910428	Mouse
1357461	Idd2_m	insulin dependent diabetes susceptibility 2 (mouse)			Not determined		9	82910333	116910428	Mouse
10766454	Char10_m	P. chabaudi malaria resistance QTL 10 (mouse)					9	82910333	116910428	Mouse
1301487	Nociq1_m	nociceptive sensitivity inflammatory QTL 1 (mouse)			Not determined		9	84528818	118528921	Mouse
10412180	Msam3_m	muscle, skeletal, activity measure 3 (mouse)			Not determined		9	85897510	108641186	Mouse
1300549	Bbaa17_m	B. burgdorferi-associated arthritis 17 (mouse)			Not determined		9	86230401	120230530	Mouse
1302103	Dob2_m	dietary obesity 2 (mouse)			Not determined		9	86239845	120289624	Mouse
11251716	Siim2_m	stress induced immobility 2 (mouse)					9	86748483	120748483	Mouse
12880422	V25Dq6_m	vitamin D inactive form serum level QTL 6 (mouse)					9	87800000	121800000	Mouse
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89284925	123284925	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89563342	123563342	Mouse
1357657	Pymr_m	Plasmodium yoelli malaria resistance (mouse)			Not determined		9	89977005	118938021	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11081166	Psl5_m	promotion susceptibility QTL 5 (mouse)					9	94981301	112872929	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	413
Count of miRNA genes:	308
Interacting mature miRNAs:	352
Transcripts:	ENSMUST00000049348
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_011634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006511693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006511694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017313284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003947857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK012786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK040001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL731808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC006929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC017374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U77844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000049348 ⟹ ENSMUSP00000040001

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	107,950,956 - 107,972,270 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000192567

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	107,950,967 - 107,958,487 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000193715

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	107,960,391 - 107,961,661 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000194191

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	107,962,172 - 107,968,644 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000194271 ⟹ ENSMUSP00000141689

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	107,950,988 - 107,961,045 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000194538

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	107,950,136 - 107,971,525 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000195803

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	107,962,233 - 107,968,741 (+)	Ensembl

RefSeq Acc Id:

NM_011634 ⟹ NP_035764

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	107,828,162 - 107,849,467 (+)	NCBI
GRCm38	9	107,950,963 - 107,972,268 (+)	NCBI
MGSCv37	9	107,853,294 - 107,874,599 (+)	RGD
Celera	9	107,559,385 - 107,580,687 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

GAAGTCGTGCGGTGGAGCGAAATTTGAAGGAACCGGAGCGGTGGCCGGTTCGGCCACCAAACTG
TGTCTGTCGCTGGCAGCTGGTTCCCTGGGCTGCTTGAGTCGAGCCATCATGCCTATCCGCGCTC
TGTGCACTATCTGCTCCGACTTCTTCGATCACTCCCGTGACGTGGCTGCCATCCACTGTGGCCA
CACTTTTCATCTGCAATGCCTAATCCAGTGGTTTGAGACAGCACCAAGTCGGACCTGCCCACAG
TGTAGAATCCAGGTTGGCAAAAAGACTATTATAAACAAACTTTTCTTTGACCTCGCCCAGGAAG
AGGAGAATGTCTTGGATGCAGAATTCTTAAAGAATGAACTGGACAGCGTCAAAGCTCAGCTTTC
CCAGAAAGACAGGGAGAAACGGGACAGCCAGGCCATTATCGACACTCTACGGGACACCCTGGAA
GAACGCAATGCTACCGTGGAGTCCCTACAGAACGCCTTAAACAAGGCAGAGATGCTGTGTTCCA
CCCTGAAAAAACAGATGAAGTTCCTGGAGCAGCGGCAGGATGAGACCAAACAAGCTCGGGAGGA
GGCCCACCGACTCAAGTGCAAGATGAAAACCATGGAGCAAATTGAGCTCCTACTCCAGAGCCAG
CGGTCTGAGGTGGAGGAGATGATTCGAGACATGGGTGTGGGACAGTCAGCGGTGGAGCAGCTGG
CTGTGTACTGCGTGTCCCTCAAGAAAGAGTATGAGAATCTGAAGGAAGCTCGGAAGGCCACAGG
GGAACTGGCTGACAGGTTGAAGAAGGATTTGGTGTCCTCTAGGAGCAAGTTGAAGACTCTCAAC
ACTGAGCTGGATCAGGCCAAGTTAGAACTGAGGTCAGCCCAGAAGGACTTACAAAGTGCTGACC
AGGAGATCACGAGCCTAAGAAAGAAGCTGATGATCCTCCAGGGAACCTTGAGCCTGCCTCCGGC
GACCAATGAGACGGTCAGCCGCCTGGTTTTTGAGAGCCCAGCCCCTGTGGAGATGATGAACCCG
AGGCTTCACCAGCCACCCTTCGGTGATGAGATTGATCTCAATACCACCTTTGATGTAAATACCC
CTCCAACCCAGACCTCTGGCTCCCAGCATTGCCTCCCCAAGAAGCTGTGCCTGGAGAGGGCACG
CTCTCCCATGCAGAATGTCCTCAAGAAGGTGCACAAAGTCTCCAAGCCGGAGTCCCAGCTCTCA
CTGGGTGGCCAGCGATGTGTAGGAGAGCTAGATGAGGAACTGGCTGGTGCCTTCCCTCTCTTCA
TCCGGAATGCTGTCCTGGGTCAGAAACAGCCCAACAGGACCACAGCAGAATCCCGTTGCAGCAC
AGATGTGGTAAGAATAGGCTTTGATGGGCTTGGAGGACGAACAAAATTCATCCAGCCTAGGGAC
ACAACCATTATCCGACCAGTGCCTGTTAAGTCCAAGGCCAAGAGTAAACAGAAAGTGAGAATAA
AGACTGTGAGTTCTGCCTCCCAGCCCAAGCTGGATACCTTCTTATGTCAGTGAACGGTGACCAG
AGTCATGTTTGCAATTAGTGGGCCAAGACCTGGCTAACCGGAAGTGTTTTTGGAAGATGGCTCC
TCTTGGACCAGTCCAAGAGAGATGCCCAGAAAACACACTTCCTGTGTTCACTGCGCCCTGCACC
ACACTGGGAAGCCACATGACCAGTTTACTGTTCCGATCAGCAGGGCCTACTTCCAGTTGCAGGG
TTTTGCTTATAGCTACAACCAGGTGTGGCTGGACTCCTTTTGTTTTTATAGAACAGGGTCACAT
TGACTCTAAGTGGATGGGAGTGCTGGAGGATCCTATGCAGGCTGGAGGACCCTGCGCTTGAACT
CCTGCCTGCCTCCAGCTTATTGCTTGAAATTATGGGGTGAGGTGGTGATAGGGAAAGGTTGGGG
AAGTTTTCTGTGTAAAATAAAAAGGCATCTTTTCTTCTAGGCTCTGGCTGTATAAATTTGTACC
AAAACCTTAGAAAATTTCTAGGCTTAGACCTAGTATTTTAAGTCTAGGCATGGCATTGGCTCTC
TCCCAGGGCACAGGAAGACTAGCAAGAATGGCAGCCCTGCAGTCCAAACTGTAAACAAAGCAGG
TGGGTGAGCCCAGTGAGTTCCAGCAAGCACAACAGATAACTACTGACCAACTGTTAGCCTCTAG
GGCTTGGGTTCAGGACTTTCACCAAGAGAATTTCCCTATTGGCCACTTGCCTGAGTCAGATGGC
CTAAGCCACTCCTGTTATTGAACAGGAGCTCACTGGCTTCCCTCTCACACCGCGTGCCTCGTGC
TGAAGACAATCCAACCACTTGCCAGGAAATGGGAGGAGCCTGAGGCTGTCTGGATGGAGATGAT
AGCCTTCTTTAAGTGATGCTTAGCTTTGATTGGCAACTCAGCATGATCTAGAGTCACGTGGAAA
GGGCCTCTCCTTGAGATCTAGATTAGCTTGGCCTGTGGGCATGTCTGTGGAGGGTTATCTTGAT
TGTGCCTACTATAAGTTGGCACCATTCCTCCCCTAGGCGGAGGATCCTGGGCTGTTTAAAGAGC
AAACAAAGAGCTGAGCACAAGAACACATGCACTATGTCTGCTCCTGAGCGCTACTCACTGCTCC
ACCCTCTGCCTAGACTTCCCTGCAATGAACCTGTAACCTGAATCTTGAAGCTAAAATAAAAACT
TTCTCCCCT

hide sequence

RefSeq Acc Id:

XM_006511693 ⟹ XP_006511756

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	107,828,303 - 107,848,729 (+)	NCBI
GRCm38	9	107,951,103 - 107,971,530 (+)	NCBI

Sequence:

show sequence

GCTCCGACTTCTTCGATCACTCCCGTGACGTGGCTGCCATCCACTGTGGCCACACTTTTCATCT
GCAATGAATGAACTGGACAGCGTCAAAGCTCAGCTTTCCCAGAAAGACAGGGAGAAACGGGACA
GCCAGGCCATTATCGACACTCTACGGGACACCCTGGAAGAACGCAATGCTACCGTGGAGTCCCT
ACAGAACGCCTTAAACAAGGCAGAGATGCTGTGTTCCACCCTGAAAAAACAGATGAAGTTCCTG
GAGCAGCGGCAGGATGAGACCAAACAAGCTCGGGAGGAGGCCCACCGACTCAAGTGCAAGATGA
AAACCATGGAGCAAATTGAGCTCCTACTCCAGAGCCAGCGGTCTGAGGTGGAGGAGATGATTCG
AGACATGGGTGTGGGACAGTCAGCGGTGGAGCAGCTGGCTGTGTACTGCGTGTCCCTCAAGAAA
GAGTATGAGAATCTGAAGGAAGCTCGGAAGGCCACAGGGGAACTGGCTGACAGGTTGAAGAAGG
ATTTGGTGTCCTCTAGGAGCAAGTTGAAGACTCTCAACACTGAGCTGGATCAGGCCAAGTTAGA
ACTGAGGTCAGCCCAGAAGGACTTACAAAGTGCTGACCAGGAGATCACGAGCCTAAGAAAGAAG
CTGATGATCCTCCAGGGAACCTTGAGCCTGCCTCCGGCGACCAATGAGACGGTCAGCCGCCTGG
TTTTTGAGAGCCCAGCCCCTGTGGAGATGATGAACCCGAGGCTTCACCAGCCACCCTTCGGTGA
TGAGATTGATCTCAATACCACCTTTGATGTAAATACCCCTCCAACCCAGACCTCTGGCTCCCAG
CATTGCCTCCCCAAGAAGCTGTGCCTGGAGAGGGCACGCTCTCCCATGCAGAATGTCCTCAAGA
AGGTGCACAAAGTCTCCAAGCCGGAGTCCCAGCTCTCACTGGGTGGCCAGCGATGTGTAGGAGA
GCTAGATGAGGAACTGGCTGGTGCCTTCCCTCTCTTCATCCGGAATGCTGTCCTGGGTCAGAAA
CAGCCCAACAGGACCACAGCAGAATCCCGTTGCAGCACAGATGTGGTAAGAATAGGCTTTGATG
GGCTTGGAGGACGAACAAAATTCATCCAGCCTAGGGACACAACCATTATCCGACCAGTGCCTGT
TAAGTCCAAGGCCAAGAGTAAACAGAAAGTGAGAATAAAGACTGTGAGTTCTGCCTCCCAGCCC
AAGCTGGATACCTTCTTATGTCAGTGAACGGTGACCAGAGTCATGTTTGCAATTAGTGGGCCAA
GACCTGGCTAACCGGAAGTGTTTTTGGAAGATGGCTCCTCTTGGACCAGTCCAAGAGAGATGCC
CAGAAAACACACTTCCTGTGTTCACTGCGCCCTGCACCACACTGGGAAGCCACATGACCAGTTT
ACTGTTCCGATCAGCAGGGCCTACTTCCAGTTGCAGGGTTTTGCTTATAGCTACAACCAGGTGT
GGCTGGACTCCTTTTGTTTTTATAGAACAGGGTCACATTGACTCTAAGTGGATGGGAGTGCTGG
AGGATCCTATGCAGGCTGGAGGACCCTGCGCTTGAACTCCTGCCTGCCTCCAGCTTATTGCTTG
AAATTATGGGGTGAGGTGGTGATAGGGAAAGGTTGGGGAAGTTTTCTGTGTAAAATAAAAAGGC
ATCTTTTCTTCTA

hide sequence

RefSeq Acc Id:

XM_006511694 ⟹ XP_006511757

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	107,828,156 - 107,848,729 (+)	NCBI
GRCm38	9	107,951,599 - 107,971,530 (+)	NCBI

Sequence:

show sequence

ACAGAGAAACCCTGTCTCGCAAAACAAAACAAAAAAAGAAACAGACCAATTTATGCTGATAGGT
TTCTGGCAATCTTTAAGGGTCTGTCGTTTGCTGGAATGCTTTGGATTGTTTCTATCCAGAAACA
CCTCGTTGATCAGACACTCCAGTACACCTGGCTTAACTTGGAATGGCAAGGAAGTGTGTTCCTG
TCGTCGAGGGGTCCTGATGTTCAGTTGTCTTGTGGGTGACGAAAGAGTCCCTTTGCAACTGAGC
AGGCTGATCCAAAGCTCCCAACCAAAGAGAAAATAAGGTAGAAGAGAGGTCTCCTTTGGGAGAC
TGGGAGGTTTTTGAGGGGCAATAGGGCCCACAAAGCAGGAAGTGGTGTGAACACTTCTGGGTGT
CTCCCATTTGCAAAGCTTTGTTTAAAACCGACCTTAGAGTCTGTTGTGTTGCATATCCCAGTAC
AGGCTGGGGAGGAGGGACAGTGTGGAGACTGAATGATTGGGAGTTTTAAGGTTAGTCTCAGCTA
CATAAGTAAGGCAAAAGTCAGCCTGAATTTTCCCAGACCTTGTGTCAAAAAGACAAACAAACAA
AACCACATAATACAGTGTTGTGTGGCCTGAGCTCCATTCCTAAGGAGCCATTGTGTAGTTAGGT
TAGAAGTAACCCCGCCACTAAAGCTACTTTGTATCACCTGCTCTCTCCCTAAGCTTTCACCTTG
GACTTTCCTGTGTAATTATGTTTTAGGTCTGTTTCTTGAAATCATATTTGGCTTTAAAAATTTG
GTACTAAACTGAACCTTTTTAAGCCTTAAGTGTGAGCTTACTGATGAAATTTGTCATATTCAGT
ATTTTCTATCTTGTTCCACCTGTTGGATTTTGTGGGGGTTTTCTTGTCTTTTTGTTTGCTGTTT
TCAAGAAAGTGTTTCTCTGTGTAGCCCTGGCTGTGCTGGAACTCACTCTGTAGACCAGGCTGGC
CTCGAACTCAAGCTAGATCTGCTCACCACTGTCTCCCAAATTTTGGGATTAAAGGTGTGCGCCA
CCACACCCACACCTAGCTGATTTTTTTAATCTTATTTTTATTTTAAATTATGTGTTCTATGTGT
ATGTCTTTGTGTGGCTATGTGCATATGAGTATGGGTAACCTCAGAGGCCAGGGTCATCTGATCC
CCGTGGGGCTGGAGCTAGACAGTCGTGAGTCACCTGATAAGAGTGCTGGGAACTGAACTCAGGA
CAGCCGCAGGAGCAGTACCAACACCTACTCTCAACCAGTAAGCTGTCATCTCTCCAGCCTTTTA
AAACAGACAAACAAACAGGCCTTGCTGTGTAGAGCTCAGGCTGACTGAATTTCTGGTTCTGTTT
CTTCTGCCTCCTAGAGCTCAGATTGCAGGTATATGCCCCACCTCCCCTGTCTCTCAGATCCATG
TCCTGTGCCTGGAAGGCAAGTGTTCTACTACTGGTTATACCCCAGGCCTTATAGCTATTTTTTG
TTTGTTTTGTTTTTGAAACAAGGTCTTGCTATGTAGTATTGGCTAGTTTGGGATTCATGGCAGT
CCTCTTGCCTCAGCCTTCTGAGTGCTGTGATTGCAGGTGAGAGCCACCACTTCTGGCTTCCACC
TGTGCACTTTGTCTCACGTACCCTTGGCTGGCCTTGAACTTGCTGCGTAGCCAGGGATGGCCCT
GAATTTGTAATCATTCTGCCTCCATCTCTCAAGTGTGAAAGTATGTACCATTCTTTTTGGTTTA
TATAATGCTAGGGATTGAATTTTGGGCTTTGTGTATGCTCAGCAATTGAGTTACATTCCAAGAC
CTTCCTGCCCCAAGTATCTTTTTTTTTTTTAAGATTTATTTATTATTATACATAAGTATACTGT
AGCTGACTTCAGACTCTCATTACGGGTGGTTGTGAGCCATCATGAGGTTGCTGGGATTTGAACT
CAGGACCTTCAGAACAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCTCCAGCCCAACCCCAA
GTATTCTTGAGTAAATTTTTTTGTTGTTGGGAGACAGAGTCTCAATATGTAGCTGACCATGAAC
AAGGAGATCCACCTGAGCTCAGAAATTAAAATTGTGTGCCAGCCCAGCCAGCACTACTGTAACC
ATCTTTAGACGCTGATTCTGTAGCATTGAGCACATTTGCAATGTGATATACCCTTCAGTGTTCT
CATCTGAACTTGCCATCAGCCGCAGACGATCATAGCCCACTGTTACATGCTAACTCTCCATGTT
AGTCCTCCCAGACCCTGAGACCCTCTGCTACACCGCCTGTCCCTGAGTTCCCTATCCCAGGGAT
CCTATAGGTTGAGTCTTGTATTCTGTGTCCTTTCGAGTCTGATGTATTTCACGTAGCATTATAA
TTTTATCATTCACCCATCTTCTAGCATGTATCAGAATTTCATTTTTGTTGTGGCCAATATTTAA
TTGTATGCATGAAAATACCATATTTTGTTTATTCATTTGCTGATAGACAGGTATTTCCAGATTT
TTGACTGCTGTGAATAATGCTGCTCTGAGCTGCTGTACAGATACCTTTCTGAGCCCCTGTTTCC
GTTCTTTAGGATGTATACCTGGGAGCTGAAAGACTGGGGCAGATGGAGATTCTATATTTAGGGT
TTTTTCGGAACTGGCATACTATTTTCCACAACAGCTGCCGACTTCTCTCTCTGTCTCTGTCTTC
CTCTCTCTTTCTCTGTCTCTCTATATCTGTGTGTCTCTCTCTGTCTGTGTGTCTCTCTAGGTCT
CTCTCACATCTCTGGGCTGCACAAGCTGACTTTTAAACACCTTTTTATTATTTTTAGTGTTAGA
CATTGTAATCGCCTTGTCTTGGTCTTGTAAATGCTGAGGTTACAGGCCTGAGACACTGTCTTGC
TTACTCTATTCTGTTGAAGTAATGTAGAAGAAACTACAGAGAAGTACACATGTTAAAAGTGCAT
AGCTTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACTGCTCTTCCAAAGGACCGGAGT
TCTAATCCCAGCAACCACATGATGGCTCACAACTATCTGGACAGCTACAGTATGCGCATATACA
TAAAATAAATAAATAAATAAATAAATCTTTTTTTTTTTAAGTGCATAACTTGTAGGGTTGTCAC
ATGCCCAGCACATCTGTGCAGCCAGAATCCAGATCTAGAAGTATGGTATAGGACTGGGAGGGAA
GCTCACGGGTACAGCACTTGTCCCGAGTAAATAAGGACCTGGGTTTGCTCTCCAGCTCTGCAGA
AAAAAAGAGGATAATGCCTGCATTAGAAATCTCACGTGCCCTCCCACCAGCACCCTCACACACA
TAAAGGTACCATTTTGAGGTTTTCTGTTATACAGATGAGATCATACAGAATATTATGTTTTTGT
GCATGTGCCTTCTTTTCAATATGTTTTAATGATTCATTGATAATATGCTTCTTTGTTTTTTGTT
TTTGTTTTTGTTTTTTCTGAGACAGTGATTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC
TGTAGACCAGGCTGGCCTGGAACTCAGAAATCCGTCTGCCTCTGCCTCCCGAGTGCAGGGATTA
AAGGTGTGCGCCACCGCTGCCCGGCTATGATGCTTCTTAGTTAACTCACTCTCCTGTGTCTGAT
TAGCTTTAATTTTGTAGTATGTGATCTTTGAATGTATTTGTAGTTTTTTAATGTGTTTATAGAA
AAGACTTGGACATGCGAGATGGTTTTTGAAGGGGAGTTTGTCTCTTATTCTGGGGTGAAGAAGG
CTGCCCCACTCCCATCCCTGGTCTCTCTCTCAAGCCGAGGCTTGTTTGGAGCTCGTGATTCTCT
TGCCTAGACCGAGGATTACAGTTAGACACCGCCACACCTACAGGGAACTGTTTCAATTAACATT
TAATACTTGTCCATACCAATAACTGATGTAAATCTGTCCATGTTTTGCTTTTACCACTACTTAA
GACCCCTAAATTCCTAACCTGAAGTAGGGTATTATCAAAGACTATGTCTCTGAGAGACTCTGAG
CTTTGTCACCTACACTGTACAGCCCAGCTGCAAAGAACAGCCCTGGGCCAAGACTTCCAACCTG
AAACAACAGCGTTGCTCAGGCCCGCAGGACTGTCCTGCCTGTAGTGATAGCCTCTCATTGTAGG
CAAGGCAGGCAGGCCGGTCTTAAAGTGGAGCTAATAGCAGTGGTCATGTGACCTGTATCCCCAG
CCATGCCAGGATTACTAGTCTTTCATTCTGTTTTCACTGTAGCCTAATCCAGTGGTTTGAGACA
GCACCAAGTCGGACCTGCCCACAGTGTAGAATCCAGGTAAGGATGATGGAGTGGGGACATCTCT
GCTGAAGACCTACCTCTTCTTTCCAGAAGGCAGGGATGGGGAAAACATCTCTGAAATAGAAACA
TTTTGACCTTTTGACCCTGTTGGTGTGAGGCCAGCTGATCCTCCCAAACATCTGTGAGTCACTC
AGGAGGCCTGCTTACCCCCTCGGGTGGCTGGAAGATAGACTTTCCCAACCAGGCTTCACTTGTG
TATACTTGGCTGCCTCTAATGTTTAGCAAATGTCCCTGTGCATAGACATGACTTCATCCACCAG
CAAGAGGATGCATGTGGAAAGTTAGGTCTGAGAGCAGACCTAGAACATGAGGTTGGCAAAAAGA
CTATTATAAACAAACTTTTCTTTGACCTCGCCCAGGAAGAGGAGAATGTCTTGGATGCAGAATT
CTTAAAGAATGAACTGGACAGCGTCAAAGCTCAGCTTTCCCAGAAAGACAGGGAGAAACGGGAC
AGCCAGGCCATTATCGACACTCTACGGGACACCCTGGAAGAACGCAATGCTACCGTGGAGTCCC
TACAGAACGCCTTAAACAAGGCAGAGATGCTGTGTTCCACCCTGAAAAAACAGATGAAGTTCCT
GGAGCAGCGGCAGGATGAGACCAAACAAGCTCGGGAGGAGGCCCACCGACTCAAGTGCAAGATG
AAAACCATGGAGCAAATTGAGCTCCTACTCCAGAGCCAGCGGTCTGAGGTGGAGGAGATGATTC
GAGACATGGGTGTGGGACAGTCAGCGGTGGAGCAGCTGGCTGTGTACTGCGTGTCCCTCAAGAA
AGAGTATGAGAATCTGAAGGAAGCTCGGAAGGCCACAGGGGAACTGGCTGACAGGTTGAAGAAG
GATTTGGTGTCCTCTAGGAGCAAGTTGAAGACTCTCAACACTGAGCTGGATCAGGCCAAGTTAG
AACTGAGGTCAGCCCAGAAGGACTTACAAAGTGCTGACCAGGAGATCACGAGCCTAAGAAAGAA
GCTGATGATCCTCCAGGGAACCTTGAGCCTGCCTCCGGCGACCAATGAGACGGTCAGCCGCCTG
GTTTTTGAGAGCCCAGCCCCTGTGGAGATGATGAACCCGAGGCTTCACCAGCCACCCTTCGGTG
ATGAGATTGATCTCAATACCACCTTTGATGTAAATACCCCTCCAACCCAGACCTCTGGCTCCCA
GCATTGCCTCCCCAAGAAGCTGTGCCTGGAGAGGGCACGCTCTCCCATGCAGAATGTCCTCAAG
AAGGTGCACAAAGTCTCCAAGCCGGAGTCCCAGCTCTCACTGGGTGGCCAGCGATGTGTAGGAG
AGCTAGATGAGGAACTGGCTGGTGCCTTCCCTCTCTTCATCCGGAATGCTGTCCTGGGTCAGAA
ACAGCCCAACAGGACCACAGCAGAATCCCGTTGCAGCACAGATGTGGTAAGAATAGGCTTTGAT
GGGCTTGGAGGACGAACAAAATTCATCCAGCCTAGGGACACAACCATTATCCGACCAGTGCCTG
TTAAGTCCAAGGCCAAGAGTAAACAGAAAGTGAGAATAAAGACTGTGAGTTCTGCCTCCCAGCC
CAAGCTGGATACCTTCTTATGTCAGTGAACGGTGACCAGAGTCATGTTTGCAATTAGTGGGCCA
AGACCTGGCTAACCGGAAGTGTTTTTGGAAGATGGCTCCTCTTGGACCAGTCCAAGAGAGATGC
CCAGAAAACACACTTCCTGTGTTCACTGCGCCCTGCACCACACTGGGAAGCCACATGACCAGTT
TACTGTTCCGATCAGCAGGGCCTACTTCCAGTTGCAGGGTTTTGCTTATAGCTACAACCAGGTG
TGGCTGGACTCCTTTTGTTTTTATAGAACAGGGTCACATTGACTCTAAGTGGATGGGAGTGCTG
GAGGATCCTATGCAGGCTGGAGGACCCTGCGCTTGAACTCCTGCCTGCCTCCAGCTTATTGCTT
GAAATTATGGGGTGAGGTGGTGATAGGGAAAGGTTGGGGAAGTTTTCTGTGTAAAATAAAAAGG
CATCTTTTCTTCTA

hide sequence

RefSeq Acc Id:

XM_017313284 ⟹ XP_017168773

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	107,833,885 - 107,848,729 (+)	NCBI
GRCm38	9	107,956,687 - 107,971,530 (+)	NCBI

Sequence:

show sequence

GTGCCTAGAGTGTGTGGAGCGAGGCTTGTGGAGCAGGTAGAGCTGTCAGGTGCAGGCAAGCAAC
CTCGAGACAGTCATCAGAGGCATACACTGTCAGTGGAGAGGGGATAAGCGACTAGTGGATCTCC
CCTTGGGCTCTCAGGGCCTCTAAGACCCTGAGCTGTATGAAGGACTTACGGTCTTCCTTCCATT
CTCACTAGTCAGGGAAGATGTGTGAATCCACCATTCCCTAACCTGCCTGGGCCTCGAAATTGTC
TGGAGAGCATGGTGTAGTGGCAGATGCTGGGCCTTTCCAAGCCCAGCCGGAGAGGACAAAGCTC
CTGGATTTGGTATTTCTAACCAGGTGGAAGGAAGATCAGACCACAGGGAGGGTAACCAGAATGA
ACTGGACAGCGTCAAAGCTCAGCTTTCCCAGAAAGACAGGGAGAAACGGGACAGCCAGGCCATT
ATCGACACTCTACGGGACACCCTGGAAGAACGCAATGCTACCGTGGAGTCCCTACAGAACGCCT
TAAACAAGGCAGAGATGCTGTGTTCCACCCTGAAAAAACAGATGAAGTTCCTGGAGCAGCGGCA
GGATGAGACCAAACAAGCTCGGGAGGAGGCCCACCGACTCAAGTGCAAGATGAAAACCATGGAG
CAAATTGAGCTCCTACTCCAGAGCCAGCGGTCTGAGGTGGAGGAGATGATTCGAGACATGGGTG
TGGGACAGTCAGCGGTGGAGCAGCTGGCTGTGTACTGCGTGTCCCTCAAGAAAGAGTATGAGAA
TCTGAAGGAAGCTCGGAAGGCCACAGGGGAACTGGCTGACAGGTTGAAGAAGGATTTGGTGTCC
TCTAGGAGCAAGTTGAAGACTCTCAACACTGAGCTGGATCAGGCCAAGTTAGAACTGAGGTCAG
CCCAGAAGGACTTACAAAGTGCTGACCAGGAGATCACGAGCCTAAGAAAGAAGCTGATGATCCT
CCAGGGAACCTTGAGCCTGCCTCCGGCGACCAATGAGACGGTCAGCCGCCTGGTTTTTGAGAGC
CCAGCCCCTGTGGAGATGATGAACCCGAGGCTTCACCAGCCACCCTTCGGTGATGAGATTGATC
TCAATACCACCTTTGATGTAAATACCCCTCCAACCCAGACCTCTGGCTCCCAGCATTGCCTCCC
CAAGAAGCTGTGCCTGGAGAGGGCACGCTCTCCCATGCAGAATGTCCTCAAGAAGGTGCACAAA
GTCTCCAAGCCGGAGTCCCAGCTCTCACTGGGTGGCCAGCGATGTGTAGGAGAGCTAGATGAGG
AACTGGCTGGTGCCTTCCCTCTCTTCATCCGGAATGCTGTCCTGGGTCAGAAACAGCCCAACAG
GACCACAGCAGAATCCCGTTGCAGCACAGATGTGGTAAGAATAGGCTTTGATGGGCTTGGAGGA
CGAACAAAATTCATCCAGCCTAGGGACACAACCATTATCCGACCAGTGCCTGTTAAGTCCAAGG
CCAAGAGTAAACAGAAAGTGAGAATAAAGACTGTGAGTTCTGCCTCCCAGCCCAAGCTGGATAC
CTTCTTATGTCAGTGAACGGTGACCAGAGTCATGTTTGCAATTAGTGGGCCAAGACCTGGCTAA
CCGGAAGTGTTTTTGGAAGATGGCTCCTCTTGGACCAGTCCAAGAGAGATGCCCAGAAAACACA
CTTCCTGTGTTCACTGCGCCCTGCACCACACTGGGAAGCCACATGACCAGTTTACTGTTCCGAT
CAGCAGGGCCTACTTCCAGTTGCAGGGTTTTGCTTATAGCTACAACCAGGTGTGGCTGGACTCC
TTTTGTTTTTATAGAACAGGGTCACATTGACTCTAAGTGGATGGGAGTGCTGGAGGATCCTATG
CAGGCTGGAGGACCCTGCGCTTGAACTCCTGCCTGCCTCCAGCTTATTGCTTGAAATTATGGGG
TGAGGTGGTGATAGGGAAAGGTTGGGGAAGTTTTCTGTGTAAAATAAAAAGGCATCTTTTCTTC
TA

hide sequence

RefSeq Acc Id:

XR_003947857

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	107,827,524 - 107,849,469 (+)	NCBI
GRCm38	9	107,950,325 - 107,972,270 (+)	NCBI

Sequence:

show sequence

ATTTCCTGGTCTTTGAAGCATCTGTACCTCCAAAATCACCATCCTACAGTCTCAGGTATGAGGC
ATTCTGGGAGGAAAGGGCTAAATTACTAGCTCCAGTGTCTACCTAATCTCAAAGGTTATTAGGT
CATATTTGAATAAAGCCAGGACTAGTGTAGTGGTTCGAAGGGCTAGGACTTAATGTGTCCACCT
TTCCAAGATGATCCATAGTAGAAGGTTTAGAAAGTGGGGAGCCCTCTTTCTGTTTGGGAACTGT
GGGCTGCCAGCGTATGGCCTATTACTTTCCATAGCCATGGTACCATCATCCCCTTTTCTTGGCA
TTCCAGTCTATTTGACTGCCCTGAAGTGCAGCAAGAAGGGGTCTGGTTCACTTCGCACCGGCTC
TAGCTTGAGACAATACCCGGCTTAGCAGGGATAGGGGTCAGACTGTAGTTTCACTGTTTTACGC
CACAGGGGATCGCAGGGTTTTGCGGTAGAAACAGGGACCCACTCCCAGGAGACCCGAAGGAGCT
AAATCCCAGGATTCCGCACGGCTGGCGGGCTGCTTATCACAGCCCTCCAGCGCCCCGCCCCGAA
GTTTGTCCAATCAGAGGGAAGCACTCAGGCGTGGGTTTGTTATTCCTTCCGGTTCACTACCGGA
AGTCGTGCGGTGGAGCGAAATTTGAAGGAACCGGAGCGGTGGCCGGTTCGGCCACCAAACTGTG
TCTGTCGCTGGCAGCTGGTTCCCTGGGCTGCTTGAGTCGAGCCATCATGCCTATCCGCGCTCTG
TGCACTATCTGCTCCGACTTCTTCGATCACTCCCGTGACGTGGCTGCCATCCACTGTGGCCACA
CTTTTCATCTGCAATGCCTAATCCAGTGGTTTGAGACAGCACCAAGTCGGACCTGCCCACAGTG
TAGAATCCAGGTTGGCAAAAAGACTATTATAAACAAACTTTTCTTTGACCTCGCCCAGGAAGAG
GAGAATGTCTTGGATGCAGAATTCTTAAAGAATGAACTGGACAGCGTCAAAGCTCAGCTTTCCC
AGAAAGACAGGGAGAAACGGGACAGCCAGGCCATTATCGACACTCTACGGGACACCCTGGAAGA
ACGCAATGCTACCGTGGAGTCCCTACAGAACGCCTTAAACAAGGCAGAGATGCTGTGTTCCACC
CTGAAAAAACAGATGAAGTTCCTGGAGCAGCGGCAGGATGAGACCAAACAAGCTCGGGAGGAGG
CCCACCGACTCAAGTGCAAGATGAAAACCATGGAGCAAATTGAGCTCCTACTCCAGAGCCAGCG
GTCTGAGGTGGAGGAGATGATTCGAGACATGGGTGTGGGACAGTCAGCGGTGGAGCAGCTGGCT
GTGTACTGCGTGTCCCTCAAGAAAGAGTATGAGAATCTGAAGGAAGCTCGGAAGGCCACAGGGG
AACTGGCTGACAGGTTGAAGAAGGATTTGGTGTCCTCTAGGAGCAAGTTGAAGACTCTCAACAC
TGAGCTGGATCAGGCCAAGTTAGAACTGAGGTCAGCCCAGAAGGACTTACAAAGTGCTGACCAG
GAGATCACGGTTCTCGCTCTCCTTTCTCCAGAGCCTAAGAAAGAAGCTGATGATCCTCCAGGGA
ACCTTGAGCCTGCCTCCGGCGACCAATGAGACGGTCAGCCGCCTGGTTTTTGAGAGCCCAGCCC
CTGTGGAGATGATGAACCCGAGGCTTCACCAGCCACCCTTCGGTGATGAGATTGATCTCAATAC
CACCTTTGATGTAAATACCCCTCCAACCCAGACCTCTGGCTCCCAGCATTGCCTCCCCAAGAAG
CTGTGCCTGGAGAGGGCACGCTCTCCCATGCAGAATGTCCTCAAGAAGGTGCACAAAGTCTCCA
AGCCGGAGTCCCAGCTCTCACTGGGTGGCCAGCGATGTGTAGGAGAGCTAGATGAGGAACTGGC
TGGTGCCTTCCCTCTCTTCATCCGGAATGCTGTCCTGGGTCAGAAACAGCCCAACAGGACCACA
GCAGAATCCCGTTGCAGCACAGATGTGGTAAGAATAGGCTTTGATGGGCTTGGAGGACGAACAA
AATTCATCCAGCCTAGGGACACAACCATTATCCGACCAGTGCCTGTTAAGTCCAAGGCCAAGAG
TAAACAGAAAGTGAGAATAAAGACTGTGAGTTCTGCCTCCCAGCCCAAGCTGGATACCTTCTTA
TGTCAGTGAACGGTGACCAGAGTCATGTTTGCAATTAGTGGGCCAAGACCTGGCTAACCGGAAG
TGTTTTTGGAAGATGGCTCCTCTTGGACCAGTCCAAGAGAGATGCCCAGAAAACACACTTCCTG
TGTTCACTGCGCCCTGCACCACACTGGGAAGCCACATGACCAGTTTACTGTTCCGATCAGCAGG
GCCTACTTCCAGTTGCAGGGTTTTGCTTATAGCTACAACCAGGTGTGGCTGGACTCCTTTTGTT
TTTATAGAACAGGGTCACATTGACTCTAAGTGGATGGGAGTGCTGGAGGATCCTATGCAGGCTG
GAGGACCCTGCGCTTGAACTCCTGCCTGCCTCCAGCTTATTGCTTGAAATTATGGGGTGAGGTG
GTGATAGGGAAAGGTTGGGGAAGTTTTCTGTGTAAAATAAAAAGGCATCTTTTCTTCTAGGCTC
TGGCTGTATAAATTTGTACCAAAACCTTAGAAAATTTCTAGGCTTAGACCTAGTATTTTAAGTC
TAGGCATGGCATTGGCTCTCTCCCAGGGCACAGGAAGACTAGCAAGAATGGCAGCCCTGCAGTC
CAAACTGTAAACAAAGCAGGTGGGTGAGCCCAGTGAGTTCCAGCAAGCACAACAGATAACTACT
GACCAACTGTTAGCCTCTAGGGCTTGGGTTCAGGACTTTCACCAAGAGAATTTCCCTATTGGCC
ACTTGCCTGAGTCAGATGGCCTAAGCCACTCCTGTTATTGAACAGGAGCTCACTGGCTTCCCTC
TCACACCGCGTGCCTCGTGCTGAAGACAATCCAACCACTTGCCAGGAAATGGGAGGAGCCTGAG
GCTGTCTGGATGGAGATGATAGCCTTCTTTAAGTGATGCTTAGCTTTGATTGGCAACTCAGCAT
GATCTAGAGTCACGTGGAAAGGGCCTCTCCTTGAGATCTAGATTAGCTTGGCCTGTGGGCATGT
CTGTGGAGGGTTATCTTGATTGTGCCTACTATAAGTTGGCACCATTCCTCCCCTAGGCGGAGGA
TCCTGGGCTGTTTAAAGAGCAAACAAAGAGCTGAGCACAAGAACACATGCACTATGTCTGCTCC
TGAGCGCTACTCACTGCTCCACCCTCTGCCTAGACTTCCCTGCAATGAACCTGTAACCTGAATC
TTGAAGCTAAAATAAAAACTTTCTCCCCTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_035764	(Get FASTA)	NCBI Sequence Viewer
	XP_006511756	(Get FASTA)	NCBI Sequence Viewer
	XP_006511757	(Get FASTA)	NCBI Sequence Viewer
	XP_017168773	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB52994	(Get FASTA)	NCBI Sequence Viewer
	AAH06929	(Get FASTA)	NCBI Sequence Viewer
	AAH17374	(Get FASTA)	NCBI Sequence Viewer
	BAB28469	(Get FASTA)	NCBI Sequence Viewer
	BAB28567	(Get FASTA)	NCBI Sequence Viewer
	EDL21238	(Get FASTA)	NCBI Sequence Viewer
	EDL21239	(Get FASTA)	NCBI Sequence Viewer
	EDL21240	(Get FASTA)	NCBI Sequence Viewer
	Q8VIG6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_035764 ⟸ NM_011634

- UniProtKB:

Q8VIG6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKKTIINKLFF
DLAQEEENVLDAEFLKNELDSVKAQLSQKDREKRDSQAIIDTLRDTLEERNATVESLQNALNKA
EMLCSTLKKQMKFLEQRQDETKQAREEAHRLKCKMKTMEQIELLLQSQRSEVEEMIRDMGVGQS
AVEQLAVYCVSLKKEYENLKEARKATGELADRLKKDLVSSRSKLKTLNTELDQAKLELRSAQKD
LQSADQEITSLRKKLMILQGTLSLPPATNETVSRLVFESPAPVEMMNPRLHQPPFGDEIDLNTT
FDVNTPPTQTSGSQHCLPKKLCLERARSPMQNVLKKVHKVSKPESQLSLGGQRCVGELDEELAG
AFPLFIRNAVLGQKQPNRTTAESRCSTDVVRIGFDGLGGRTKFIQPRDTTIIRPVPVKSKAKSK
QKVRIKTVSSASQPKLDTFLCQ

hide sequence

RefSeq Acc Id:

XP_006511756 ⟸ XM_006511693

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNELDSVKAQLSQKDREKRDSQAIIDTLRDTLEERNATVESLQNALNKAEMLCSTLKKQMKFLE
QRQDETKQAREEAHRLKCKMKTMEQIELLLQSQRSEVEEMIRDMGVGQSAVEQLAVYCVSLKKE
YENLKEARKATGELADRLKKDLVSSRSKLKTLNTELDQAKLELRSAQKDLQSADQEITSLRKKL
MILQGTLSLPPATNETVSRLVFESPAPVEMMNPRLHQPPFGDEIDLNTTFDVNTPPTQTSGSQH
CLPKKLCLERARSPMQNVLKKVHKVSKPESQLSLGGQRCVGELDEELAGAFPLFIRNAVLGQKQ
PNRTTAESRCSTDVVRIGFDGLGGRTKFIQPRDTTIIRPVPVKSKAKSKQKVRIKTVSSASQPK
LDTFLCQ

hide sequence

RefSeq Acc Id:

XP_006511757 ⟸ XM_006511694

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLCSTLKKQMKFLEQRQDETKQAREEAHRLKCKMKTMEQIELLLQSQRSEVEEMIRDMGVGQSA
VEQLAVYCVSLKKEYENLKEARKATGELADRLKKDLVSSRSKLKTLNTELDQAKLELRSAQKDL
QSADQEITSLRKKLMILQGTLSLPPATNETVSRLVFESPAPVEMMNPRLHQPPFGDEIDLNTTF
DVNTPPTQTSGSQHCLPKKLCLERARSPMQNVLKKVHKVSKPESQLSLGGQRCVGELDEELAGA
FPLFIRNAVLGQKQPNRTTAESRCSTDVVRIGFDGLGGRTKFIQPRDTTIIRPVPVKSKAKSKQ
KVRIKTVSSASQPKLDTFLCQ

hide sequence

RefSeq Acc Id:

XP_017168773 ⟸ XM_017313284

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLCSTLKKQMKFLEQRQDETKQAREEAHRLKCKMKTMEQIELLLQSQRSEVEEMIRDMGVGQSA
VEQLAVYCVSLKKEYENLKEARKATGELADRLKKDLVSSRSKLKTLNTELDQAKLELRSAQKDL
QSADQEITSLRKKLMILQGTLSLPPATNETVSRLVFESPAPVEMMNPRLHQPPFGDEIDLNTTF
DVNTPPTQTSGSQHCLPKKLCLERARSPMQNVLKKVHKVSKPESQLSLGGQRCVGELDEELAGA
FPLFIRNAVLGQKQPNRTTAESRCSTDVVRIGFDGLGGRTKFIQPRDTTIIRPVPVKSKAKSKQ
KVRIKTVSSASQPKLDTFLCQ

hide sequence

RefSeq Acc Id:

ENSMUSP00000040001 ⟸ ENSMUST00000049348

RefSeq Acc Id:

ENSMUSP00000141689 ⟸ ENSMUST00000194271

Protein Domains

RING-type

Promoters

RGD ID:

6845273

Promoter ID:

MM_KWN:58750

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

NM_011634

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	107,852,926 - 107,853,426 (+)	MPROMDB

RGD ID:

8670844

Promoter ID:

EPDNEW_M13451

Type:

multiple initiation site

Name:

Traip_1

Description:

Mus musculus TRAF-interacting protein , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	107,950,969 - 107,951,029	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1096377	AgrOrtholog
Ensembl Genes	ENSMUSG00000032586	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000040001	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000141689	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000049348	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000194271	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Znf_RING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:22036	UniProtKB/Swiss-Prot
MGD	MGI:1096377	ENTREZGENE
NCBI Gene	22036	ENTREZGENE
Pfam	zf-RING_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Traip	PhenoGen
PROSITE	ZF_RING_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	RING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene	Mm.297870	ENTREZGENE
UniProt	A0A0A6YWT5_MOUSE	UniProtKB/TrEMBL
	Q8VIG6	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	O08854	UniProtKB/Swiss-Prot
	Q922M8	UniProtKB/Swiss-Prot
	Q9CPP4	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM