GINM1 (glycosylated integral membrane protein 1) - Rat Genome Database

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Gene: GINM1 (glycosylated integral membrane protein 1) Homo sapiens
Analyze
Symbol: GINM1
Name: glycosylated integral membrane protein 1
RGD ID: 1320268
HGNC Page HGNC:21074
Description: Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C6orf72; dJ12G14.2; glycoprotein integral membrane 1; glycoprotein integral membrane protein 1; hypothetical protein LOC116254; uncharacterized protein C6orf72
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386149,566,375 - 149,591,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6149,566,294 - 149,591,748 (+)EnsemblGRCh38hg38GRCh38
GRCh376149,887,511 - 149,912,884 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366149,929,217 - 149,953,760 (+)NCBINCBI36Build 36hg18NCBI36
Build 346149,929,220 - 149,953,760NCBI
Celera6150,622,574 - 150,647,109 (+)NCBICelera
Cytogenetic Map6q25.1NCBI
HuRef6147,454,156 - 147,478,695 (+)NCBIHuRef
CHM1_16150,152,232 - 150,176,773 (+)NCBICHM1_1
T2T-CHM13v2.06150,766,116 - 150,791,484 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12975309   PMID:14574404   PMID:15489334   PMID:23376485   PMID:26186194   PMID:28514442   PMID:28692057   PMID:32296183   PMID:33845483   PMID:33961781   PMID:34079125  
PMID:35156780   PMID:35337019   PMID:35696571  


Genomics

Comparative Map Data
GINM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386149,566,375 - 149,591,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6149,566,294 - 149,591,748 (+)EnsemblGRCh38hg38GRCh38
GRCh376149,887,511 - 149,912,884 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366149,929,217 - 149,953,760 (+)NCBINCBI36Build 36hg18NCBI36
Build 346149,929,220 - 149,953,760NCBI
Celera6150,622,574 - 150,647,109 (+)NCBICelera
Cytogenetic Map6q25.1NCBI
HuRef6147,454,156 - 147,478,695 (+)NCBIHuRef
CHM1_16150,152,232 - 150,176,773 (+)NCBICHM1_1
T2T-CHM13v2.06150,766,116 - 150,791,484 (+)NCBIT2T-CHM13v2.0
Ginm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39107,643,711 - 7,656,681 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl107,643,711 - 7,668,588 (-)EnsemblGRCm39 Ensembl
GRCm38107,767,947 - 7,780,950 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl107,767,947 - 7,792,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv37107,487,745 - 7,500,715 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36107,458,140 - 7,471,107 (-)NCBIMGSCv36mm8
Celera107,646,399 - 7,659,429 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map102.35NCBI
Ginm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814,066,766 - 4,082,640 (-)NCBIGRCr8
mRatBN7.212,246,384 - 2,262,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12,246,394 - 2,262,217 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx11,896,216 - 1,912,079 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.017,896,618 - 7,912,483 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012,178,323 - 2,194,190 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.011,870,039 - 1,885,976 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl11,870,388 - 1,885,981 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013,566,597 - 3,582,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.412,438,830 - 2,455,290 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.112,438,995 - 2,455,285 (-)NCBI
Celera1795,143 - 810,978 (-)NCBICelera
Cytogenetic Map1p13NCBI
Ginm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543911,660,915 - 11,688,108 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543911,661,013 - 11,688,004 (-)NCBIChiLan1.0ChiLan1.0
GINM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25169,591,691 - 169,617,218 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16167,485,278 - 167,510,792 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06147,385,283 - 147,410,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16152,091,069 - 152,115,862 (+)NCBIpanpan1.1PanPan1.1panPan2
GINM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1140,349,325 - 40,374,268 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl140,349,141 - 40,374,199 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha141,186,520 - 41,212,163 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0140,529,405 - 40,556,488 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl140,522,091 - 40,554,488 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1140,405,570 - 40,430,875 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0140,270,570 - 40,297,633 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0140,611,438 - 40,638,518 (+)NCBIUU_Cfam_GSD_1.0
Ginm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946135,289,506 - 135,304,222 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364892,541,449 - 2,556,721 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364892,541,507 - 2,556,942 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GINM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl116,360,370 - 16,381,864 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1116,362,777 - 16,381,897 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2118,690,574 - 18,702,882 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GINM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11322,042,159 - 22,069,569 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040198,065,368 - 198,092,817 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ginm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247858,467,443 - 8,502,699 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247858,467,142 - 8,502,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GINM1
17 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6q24.1-27(chr6:141132990-169339571)x3 copy number gain See cases [RCV000050604] Chr6:141132990..169339571 [GRCh38]
Chr6:141454127..169739666 [GRCh37]
Chr6:141495820..169481591 [NCBI36]
Chr6:6q24.1-27		 pathogenic
GRCh38/hg38 6q24.3-25.1(chr6:146481119-151427629)x1 copy number loss See cases [RCV000051005] Chr6:146481119..151427629 [GRCh38]
Chr6:146802255..151748764 [GRCh37]
Chr6:146843948..151790457 [NCBI36]
Chr6:6q24.3-25.1		 pathogenic
GRCh38/hg38 6q24.2-25.2(chr6:144932561-152985364)x1 copy number loss See cases [RCV000052206] Chr6:144932561..152985364 [GRCh38]
Chr6:145253697..153306499 [GRCh37]
Chr6:145295390..153348192 [NCBI36]
Chr6:6q24.2-25.2		 pathogenic
GRCh38/hg38 6q24.3-25.1(chr6:147805119-150893715)x1 copy number loss See cases [RCV000135408] Chr6:147805119..150893715 [GRCh38]
Chr6:148126255..151214851 [GRCh37]
Chr6:148167948..151256544 [NCBI36]
Chr6:6q24.3-25.1		 pathogenic
GRCh38/hg38 6q24.3-25.1(chr6:148112335-149649984)x1 copy number loss See cases [RCV000136969] Chr6:148112335..149649984 [GRCh38]
Chr6:148433471..149971120 [GRCh37]
Chr6:148475164..150012813 [NCBI36]
Chr6:6q24.3-25.1		 pathogenic
GRCh38/hg38 6q23.3-25.3(chr6:135358150-155455117)x3 copy number gain See cases [RCV000136826] Chr6:135358150..155455117 [GRCh38]
Chr6:135679288..155776251 [GRCh37]
Chr6:135720981..155817943 [NCBI36]
Chr6:6q23.3-25.3		 pathogenic
GRCh38/hg38 6q24.3-25.1(chr6:147580351-150227963)x3 copy number gain See cases [RCV000138362] Chr6:147580351..150227963 [GRCh38]
Chr6:147901487..150549099 [GRCh37]
Chr6:147943180..150590792 [NCBI36]
Chr6:6q24.3-25.1		 uncertain significance
GRCh38/hg38 6q23.2-27(chr6:133537271-165875545)x3 copy number gain See cases [RCV000143444] Chr6:133537271..165875545 [GRCh38]
Chr6:133858409..166289033 [GRCh37]
Chr6:133900102..166209023 [NCBI36]
Chr6:6q23.2-27		 pathogenic
GRCh37/hg19 6q24.2-25.1(chr6:144075695-152337005)x1 copy number loss See cases [RCV000448815] Chr6:144075695..152337005 [GRCh37]
Chr6:6q24.2-25.1		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6q24.3-25.1(chr6:148364229-149928368)x1 copy number loss See cases [RCV000511918] Chr6:148364229..149928368 [GRCh37]
Chr6:6q24.3-25.1		 likely pathogenic
GRCh37/hg19 6q24.1-25.1(chr6:139513020-150389231)x1 copy number loss See cases [RCV000510942] Chr6:139513020..150389231 [GRCh37]
Chr6:6q24.1-25.1		 pathogenic
GRCh37/hg19 6q24.2-25.1(chr6:144947731-150266155)x1 copy number loss not provided [RCV000682729] Chr6:144947731..150266155 [GRCh37]
Chr6:6q24.2-25.1		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6q24.3-25.1(chr6:148690764-150494873)x1 copy number loss See cases [RCV000790589] Chr6:148690764..150494873 [GRCh37]
Chr6:6q24.3-25.1		 pathogenic
NM_138785.5(GINM1):c.7G>A (p.Gly3Ser) single nucleotide variant Inborn genetic diseases [RCV003290039] Chr6:149566421 [GRCh38]
Chr6:149887557 [GRCh37]
Chr6:6q25.1		 uncertain significance
GRCh37/hg19 6q24.3-25.3(chr6:148195086-160127254)x3 copy number gain not provided [RCV000846496] Chr6:148195086..160127254 [GRCh37]
Chr6:6q24.3-25.3		 pathogenic
GRCh37/hg19 6q25.1-25.2(chr6:149431322-154120064)x1 copy number loss not provided [RCV001005856] Chr6:149431322..154120064 [GRCh37]
Chr6:6q25.1-25.2		 pathogenic
NM_138785.5(GINM1):c.370G>C (p.Gly124Arg) single nucleotide variant Inborn genetic diseases [RCV003249709] Chr6:149578914 [GRCh38]
Chr6:149900050 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.476G>A (p.Arg159Gln) single nucleotide variant Inborn genetic diseases [RCV003242167] Chr6:149579880 [GRCh38]
Chr6:149901016 [GRCh37]
Chr6:6q25.1		 likely benign
NM_138785.5(GINM1):c.190A>G (p.Asn64Asp) single nucleotide variant Inborn genetic diseases [RCV002884125] Chr6:149572516 [GRCh38]
Chr6:149893652 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.262T>G (p.Cys88Gly) single nucleotide variant Inborn genetic diseases [RCV002757442] Chr6:149572588 [GRCh38]
Chr6:149893724 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.730T>G (p.Trp244Gly) single nucleotide variant Inborn genetic diseases [RCV002950794] Chr6:149582452 [GRCh38]
Chr6:149903588 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.458A>T (p.Asp153Val) single nucleotide variant Inborn genetic diseases [RCV002709639] Chr6:149579862 [GRCh38]
Chr6:149900998 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.500A>G (p.Tyr167Cys) single nucleotide variant Inborn genetic diseases [RCV002668497] Chr6:149579904 [GRCh38]
Chr6:149901040 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.325A>G (p.Ile109Val) single nucleotide variant Inborn genetic diseases [RCV002965795] Chr6:149578869 [GRCh38]
Chr6:149900005 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.652G>A (p.Glu218Lys) single nucleotide variant Inborn genetic diseases [RCV002655526] Chr6:149580658 [GRCh38]
Chr6:149901794 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.445G>A (p.Val149Ile) single nucleotide variant Inborn genetic diseases [RCV003202643] Chr6:149579849 [GRCh38]
Chr6:149900985 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.553A>G (p.Ile185Val) single nucleotide variant Inborn genetic diseases [RCV003172890] Chr6:149579957 [GRCh38]
Chr6:149901093 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.224A>G (p.Asn75Ser) single nucleotide variant Inborn genetic diseases [RCV003198549] Chr6:149572550 [GRCh38]
Chr6:149893686 [GRCh37]
Chr6:6q25.1		 uncertain significance
NM_138785.5(GINM1):c.166A>G (p.Ile56Val) single nucleotide variant Inborn genetic diseases [RCV003350952] Chr6:149572330 [GRCh38]
Chr6:149893466 [GRCh37]
Chr6:6q25.1		 likely benign
NM_138785.5(GINM1):c.110G>A (p.Gly37Glu) single nucleotide variant Inborn genetic diseases [RCV003371597] Chr6:149566524 [GRCh38]
Chr6:149887660 [GRCh37]
Chr6:6q25.1		 uncertain significance
GRCh37/hg19 6q22.31-25.3(chr6:119840686-156623091)x3 copy number gain not specified [RCV003986631] Chr6:119840686..156623091 [GRCh37]
Chr6:6q22.31-25.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:362
Count of miRNA genes:296
Interacting mature miRNAs:315
Transcripts:ENST00000367419, ENST00000433539
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
A008Y20  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376149,911,945 - 149,912,101UniSTSGRCh37
Build 366149,953,638 - 149,953,794RGDNCBI36
Celera6150,646,987 - 150,647,143RGD
Cytogenetic Map6q25.1UniSTS
HuRef6147,478,573 - 147,478,729UniSTS
GeneMap99-GB4 RH Map6597.01UniSTS
NCBI RH Map61601.5UniSTS
L18426  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map2p23.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p25UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map4q22.1-q23UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map12q24.1-q24.3UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map9p24.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map21q22.1UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map21q21.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map12p12.3UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map22q12UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map1p13-p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map10q21.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map20p11.21UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map16p13.13-p13.12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map10q11UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map12q21.31UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map9p21.1UniSTS
RH46830  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6q25.1UniSTS
HuRef6147,478,510 - 147,478,629UniSTS
GeneMap99-GB4 RH Map6596.81UniSTS
NCBI RH Map61598.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2428 2554 1641 543 1595 385 4354 2116 3608 414 1447 1607 171 1204 2787 4
Low 4 430 82 79 353 79 1 77 100 4 1 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000367419   ⟹   ENSP00000356389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6149,566,375 - 149,591,748 (+)Ensembl
RefSeq Acc Id: ENST00000433539   ⟹   ENSP00000407343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6149,578,923 - 149,582,283 (+)Ensembl
RefSeq Acc Id: ENST00000650599   ⟹   ENSP00000496902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6149,566,294 - 149,591,748 (+)Ensembl
RefSeq Acc Id: NM_138785   ⟹   NP_620140
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386149,566,375 - 149,591,748 (+)NCBI
GRCh376149,887,528 - 149,912,067 (+)RGD
Build 366149,929,217 - 149,953,760 (+)NCBI Archive
Celera6150,622,574 - 150,647,109 (+)RGD
HuRef6147,454,156 - 147,478,695 (+)ENTREZGENE
CHM1_16150,152,232 - 150,176,773 (+)NCBI
T2T-CHM13v2.06150,766,116 - 150,791,484 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_620140   ⟸   NM_138785
- Peptide Label: precursor
- UniProtKB: B2RDY7 (UniProtKB/Swiss-Prot),   E1P5A2 (UniProtKB/Swiss-Prot),   Q9NU53 (UniProtKB/Swiss-Prot),   A8K037 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000496902   ⟸   ENST00000650599
RefSeq Acc Id: ENSP00000356389   ⟸   ENST00000367419
RefSeq Acc Id: ENSP00000407343   ⟸   ENST00000433539

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9NU53-F1-model_v2 AlphaFold Q9NU53 1-330 view protein structure

Promoters
RGD ID:7209399
Promoter ID:EPDNEW_H10445
Type:initiation region
Name:GINM1_1
Description:glycoprotein integral membrane 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh386149,566,375 - 149,566,435EPDNEW
RGD ID:6804006
Promoter ID:HG_KWN:55381
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000367423,   OTTHUMT00000042644,   UC010KIE.1
Position:
Human AssemblyChrPosition (strand)Source
Build 366149,928,536 - 149,929,422 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:21074 AgrOrtholog
COSMIC GINM1 COSMIC
Ensembl Genes ENSG00000055211 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000367419 ENTREZGENE
  ENST00000367419.10 UniProtKB/Swiss-Prot
  ENST00000433539.1 UniProtKB/TrEMBL
  ENST00000650599.1 UniProtKB/TrEMBL
GTEx ENSG00000055211 GTEx
HGNC ID HGNC:21074 ENTREZGENE
Human Proteome Map GINM1 Human Proteome Map
InterPro GINM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:116254 UniProtKB/Swiss-Prot
NCBI Gene 116254 ENTREZGENE
PANTHER GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR28549 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134959041 PharmGKB
UniProt A0A3B3IRL9_HUMAN UniProtKB/TrEMBL
  A8K037 ENTREZGENE, UniProtKB/TrEMBL
  B2RDY7 ENTREZGENE
  E1P5A2 ENTREZGENE
  GINM1_HUMAN UniProtKB/Swiss-Prot
  Q5TFA5_HUMAN UniProtKB/TrEMBL
  Q9NU53 ENTREZGENE
UniProt Secondary B2RDY7 UniProtKB/Swiss-Prot
  E1P5A2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-04 GINM1  glycosylated integral membrane protein 1  GINM1  glycoprotein integral membrane 1  Symbol and/or name change 19259463 PROVISIONAL
2012-07-24 GINM1  glycoprotein integral membrane 1  C6orf72  chromosome 6 open reading frame 72  Symbol and/or name change 5135510 APPROVED