Vamp4 (vesicle-associated membrane protein 4) - Rat Genome Database

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Gene: Vamp4 (vesicle-associated membrane protein 4) Mus musculus
Analyze
Symbol: Vamp4
Name: vesicle-associated membrane protein 4
RGD ID: 1320259
MGI Page MGI
Description: Involved in several processes, including Golgi to plasma membrane protein transport; cellular response to interferon-gamma; and toxin transport. Localizes to SNARE complex; cytoplasmic vesicle; and trans-Golgi network. Is expressed in cerebellum layer; gonad; and ventral tegmental area. Orthologous to human VAMP4 (vesicle associated membrane protein 4); INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: D1Ertd147; D1Ertd147e; VAMP-4; vesicle associated membrane protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,398,084 - 162,426,651 (+)NCBIGRCm39mm39
GRCm39 Ensembl1162,398,084 - 162,426,653 (+)Ensembl
GRCm381162,570,515 - 162,599,082 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,570,515 - 162,599,084 (+)EnsemblGRCm38mm10GRCm38
MGSCv371164,500,959 - 164,529,209 (+)NCBIGRCm37mm9NCBIm37
MGSCv361164,407,503 - 164,435,753 (+)NCBImm8
Celera1165,015,226 - 165,045,414 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map170.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15345747   PMID:16141072   PMID:16141073   PMID:16506193  
PMID:18227281   PMID:18321981   PMID:18799693   PMID:19144319   PMID:19620288   PMID:20582536   PMID:21267068   PMID:21873635   PMID:22406549   PMID:22718342   PMID:22889194   PMID:23716698  
PMID:25385598   PMID:30048641   PMID:31160536   PMID:32325033  


Genomics

Comparative Map Data
Vamp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,398,084 - 162,426,651 (+)NCBIGRCm39mm39
GRCm39 Ensembl1162,398,084 - 162,426,653 (+)Ensembl
GRCm381162,570,515 - 162,599,082 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,570,515 - 162,599,084 (+)EnsemblGRCm38mm10GRCm38
MGSCv371164,500,959 - 164,529,209 (+)NCBIGRCm37mm9NCBIm37
MGSCv361164,407,503 - 164,435,753 (+)NCBImm8
Celera1165,015,226 - 165,045,414 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map170.29NCBI
VAMP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1171,700,160 - 171,742,074 (-)EnsemblGRCh38hg38GRCh38
GRCh381171,700,160 - 171,742,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371171,669,300 - 171,711,205 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361169,938,783 - 169,977,837 (-)NCBINCBI36hg18NCBI36
Celera1144,778,698 - 144,820,780 (-)NCBI
Cytogenetic Map1q24.3NCBI
HuRef1142,893,046 - 142,935,123 (-)NCBIHuRef
CHM1_11173,091,387 - 173,133,527 (-)NCBICHM1_1
Vamp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21374,919,872 - 74,942,791 (+)NCBI
Rnor_6.0 Ensembl1380,460,694 - 80,483,600 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01380,460,699 - 80,483,597 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01385,352,779 - 85,375,559 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41378,247,189 - 78,269,770 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11378,261,180 - 78,280,664 (+)NCBI
Celera1374,670,256 - 74,692,771 (+)NCBICelera
Cytogenetic Map13q22NCBI
Vamp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,223,736 - 12,260,317 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,223,736 - 12,260,506 (-)NCBIChiLan1.0ChiLan1.0
VAMP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11150,903,134 - 150,944,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1150,903,134 - 150,944,815 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01147,192,001 - 147,233,945 (-)NCBIMhudiblu_PPA_v0panPan3
VAMP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1727,278,200 - 27,303,499 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl727,278,231 - 27,302,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha726,797,085 - 26,827,670 (+)NCBI
ROS_Cfam_1.0727,078,744 - 27,107,216 (+)NCBI
UMICH_Zoey_3.1726,900,757 - 26,958,730 (+)NCBI
UNSW_CanFamBas_1.0726,935,355 - 26,993,045 (+)NCBI
UU_Cfam_GSD_1.0727,207,418 - 27,232,436 (+)NCBI
Vamp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934497,634,092 - 97,669,945 (+)NCBI
SpeTri2.0NW_00493648115,480,865 - 15,515,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,138,330 - 114,175,364 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,138,350 - 114,174,996 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,606,175 - 125,638,921 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VAMP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12557,381,143 - 57,421,886 (+)NCBI
ChlSab1.1 Ensembl2557,384,757 - 57,421,893 (+)Ensembl
Vero_WHO_p1.0NW_02366605559,006,290 - 59,051,034 (+)NCBI
Vamp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247719,986,835 - 10,034,112 (+)NCBI

Position Markers
C77099  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,598,871 - 162,598,977UniSTSGRCm38
MGSCv371164,529,002 - 164,529,108UniSTSGRCm37
Celera1165,045,207 - 165,045,313UniSTS
Cytogenetic Map1H1UniSTS
cM Map185.0UniSTS
Whitehead/MRC_RH12069.87UniSTS
UniSTS:234251  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,594,564 - 162,594,900UniSTSGRCm38
MGSCv371164,524,695 - 164,525,031UniSTSGRCm37
Celera1165,040,910 - 165,041,246UniSTS
Cytogenetic Map1H1UniSTS
cM Map185.0UniSTS
RH126100  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,598,816 - 162,599,034UniSTSGRCm38
MGSCv371164,528,947 - 164,529,165UniSTSGRCm37
Celera1165,045,152 - 165,045,370UniSTS
Cytogenetic Map1H1UniSTS
cM Map185.0UniSTS
Whitehead/MRC_RH12069.97UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139774467173774646Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135919071169919261Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141405603175405702Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145317638179317756Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157628733191628870Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1147032461167758653Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156774467189571420Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141405603175405702Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139774467173774646Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157628733191628870Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162317638194429220Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157628733191628870Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143457095177457233Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129255120163255255Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152211172186211344Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139774467173774646Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159435007193435127Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9148047933182048047Mouse
1300837Vmbic1_mventral midbrain iron content 1 (mouse)Not determined1139624618173624738Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158641251192641372Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136334204170334348Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139774467173774646Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139774467173774646Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150317922188627115Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141405603175405702Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131228571165311895Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144703778178704023Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139774467173774646Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157628733191628870Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139774467173774646Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157628733191628870Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150317922188627115Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152211172186211344Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147249520183092234Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1136002150170002264Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152211172186211344Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157628733191628870Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150929168184929353Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158641251192641372Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157628733191628870Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156774467168358833Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156774467189571420Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112081092168358833Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142661973176662164Mouse
1301164Tir3c_mtrypansomiasis infection response 3c (mouse)Not determined1154804480188804689Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147249520169211344Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147249520189251027Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139624618173624738Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152211172186211344Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160285202194285317Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151358674185358833Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161373696195373830Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150317922188627115Mouse
4142119Bpq21_mblood pressure QTL 21 (mouse)Not determined1152211172186211344Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153681660175641372Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined152007542186007711Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155706491186261999Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152211172186211344Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1148047933182048047Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154582944188582944Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158641251192641372Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153848421187848536Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153885284187885284Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152919071186706423Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141267440175267586Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158641251192641372Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158641251192641372Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147391821181391821Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122100000165000000Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145250061179250061Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147249520171804689Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160269591194269591Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156774467170976071Mouse
14746980Manh50_mmandible shape 50 (mouse)1134255813168255813Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160269591194269591Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152305175186305175Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121800000165000000Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152305175186305175Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139774467173774646Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147391821181391821Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156774467176435127Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141405603175405702Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155175373189175373Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144621573178621573Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156774467168358833Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155175373189175373Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155175373189175373Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158641251192641372Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3162
Count of miRNA genes:687
Interacting mature miRNAs:917
Transcripts:ENSMUST00000050010, ENSMUST00000128704, ENSMUST00000132158, ENSMUST00000135241, ENSMUST00000138499, ENSMUST00000150040, ENSMUST00000155003
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000050010   ⟹   ENSMUSP00000051544
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,570,828 - 162,599,078 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128704
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,570,627 - 162,582,180 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132158   ⟹   ENSMUSP00000121977
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,570,515 - 162,599,084 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135241   ⟹   ENSMUSP00000116376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,570,590 - 162,595,365 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138499
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,574,821 - 162,594,753 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150040   ⟹   ENSMUSP00000115133
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,570,837 - 162,594,772 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155003   ⟹   ENSMUSP00000114172
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,571,226 - 162,595,365 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194810   ⟹   ENSMUSP00000142298
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,570,769 - 162,594,729 (+)Ensembl
RefSeq Acc Id: NM_001347125   ⟹   NP_001334054
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,398,397 - 162,426,651 (+)NCBI
GRCm381162,570,828 - 162,599,082 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356526   ⟹   NP_001343455
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,398,084 - 162,426,651 (+)NCBI
GRCm381162,570,515 - 162,599,082 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356527   ⟹   NP_001343456
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,398,084 - 162,426,651 (+)NCBI
GRCm381162,570,515 - 162,599,082 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016796   ⟹   NP_058076
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,398,397 - 162,426,647 (+)NCBI
GRCm381162,570,828 - 162,599,078 (+)NCBI
MGSCv371164,500,959 - 164,529,209 (+)RGD
Celera1165,015,226 - 165,045,414 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058076   ⟸   NM_016796
- Peptide Label: isoform 1
- UniProtKB: Q8BSN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001343456   ⟸   NM_001356527
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001343455   ⟸   NM_001356526
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001334054   ⟸   NM_001347125
- Peptide Label: isoform 2
- UniProtKB: O70480 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000115133   ⟸   ENSMUST00000150040
RefSeq Acc Id: ENSMUSP00000121977   ⟸   ENSMUST00000132158
RefSeq Acc Id: ENSMUSP00000116376   ⟸   ENSMUST00000135241
RefSeq Acc Id: ENSMUSP00000051544   ⟸   ENSMUST00000050010
RefSeq Acc Id: ENSMUSP00000114172   ⟸   ENSMUST00000155003
RefSeq Acc Id: ENSMUSP00000142298   ⟸   ENSMUST00000194810
Promoters
RGD ID:6875466
Promoter ID:EPDNEW_M1184
Type:initiation region
Name:Vamp4_1
Description:Mus musculus vesicle-associated membrane protein 4 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,570,627 - 162,570,687EPDNEW
RGD ID:6818705
Promoter ID:MM_KWN:2642
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000086068,   ENSMUST00000111573,   NM_016796,   OTTMUST00000082751,   OTTMUST00000082752,   OTTMUST00000082753,   OTTMUST00000082754,   OTTMUST00000082755
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361164,500,486 - 164,501,507 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858730 AgrOrtholog
Ensembl Genes ENSMUSG00000026696 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000051544 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000114172 UniProtKB/Swiss-Prot
  ENSMUSP00000115133 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116376 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000121977 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000142298 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050010 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000132158 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000135241 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000150040 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000155003 UniProtKB/Swiss-Prot
  ENSMUST00000194810 UniProtKB/TrEMBL
InterPro Synaptobrevin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VAMP4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53330 UniProtKB/Swiss-Prot
MGD MGI:1858730 ENTREZGENE
NCBI Gene 53330 ENTREZGENE
PANTHER PTHR46897 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Synaptobrevin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vamp4 PhenoGen
PRINTS SYNAPTOBREVN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SYNAPTOBREVIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YY66_MOUSE UniProtKB/TrEMBL
  O70480 ENTREZGENE
  Q8BSN6 ENTREZGENE, UniProtKB/TrEMBL
  VAMP4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9D095 UniProtKB/Swiss-Prot