Tbrg4 (transforming growth factor beta regulated gene 4) - Rat Genome Database

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Gene: Tbrg4 (transforming growth factor beta regulated gene 4) Mus musculus
Analyze
Symbol: Tbrg4
Name: transforming growth factor beta regulated gene 4
RGD ID: 1320237
MGI Page MGI
Description: Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial mRNA processing and regulation of mitochondrial mRNA stability. Located in mitochondrion. Is expressed in axial musculature; germ cell of testis; ovary; and seminiferous cord. Orthologous to human TBRG4 (transforming growth factor beta regulator 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310042P22Rik; AA120735; AA408001; AI527316; cell cycle progression 2 protein; Cp; Cpr2; FAST kinase domain-containing protein 4; mKIAA0948; R74877; TB-12; transforming growth factor beta regulator 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,565,598 - 6,576,089 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,565,598 - 6,576,067 (-)EnsemblGRCm39 Ensembl
GRCm38116,615,598 - 6,626,084 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,615,598 - 6,626,067 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,515,601 - 6,526,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,516,426 - 6,526,026 (-)NCBIMGSCv36mm8
Celera1118,688,824 - 18,699,295 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Large-scale screen for genes involved in gonad development. Wertz K and Herrmann BG, Mech Dev 2000 Nov;98(1-2):51-70.
Additional References at PubMed
PMID:7654366   PMID:9798653   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12819125   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18255060   PMID:18614015   PMID:18799693   PMID:20869947   PMID:21267068   PMID:21873635   PMID:30550785   PMID:33749946   PMID:36114006  


Genomics

Comparative Map Data
Tbrg4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,565,598 - 6,576,089 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,565,598 - 6,576,067 (-)EnsemblGRCm39 Ensembl
GRCm38116,615,598 - 6,626,084 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,615,598 - 6,626,067 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,515,601 - 6,526,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,516,426 - 6,526,026 (-)NCBIMGSCv36mm8
Celera1118,688,824 - 18,699,295 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.6NCBI
TBRG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38745,100,100 - 45,111,697 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl745,100,100 - 45,112,047 (-)EnsemblGRCh38hg38GRCh38
GRCh37745,139,699 - 45,151,296 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36745,106,224 - 45,117,842 (-)NCBINCBI36Build 36hg18NCBI36
Celera745,238,535 - 45,250,160 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef745,023,497 - 45,035,149 (-)NCBIHuRef
CHM1_1745,143,388 - 45,155,037 (-)NCBICHM1_1
T2T-CHM13v2.0745,260,901 - 45,272,500 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2745,178,869 - 45,190,516 (-)NCBI
Tbrg4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,696,738 - 85,704,691 (-)NCBIGRCr8
mRatBN7.21481,481,977 - 81,490,781 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,481,981 - 81,490,756 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,884,110 - 85,890,101 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01487,123,913 - 87,129,904 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,573,509 - 83,579,500 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,876,800 - 86,885,603 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,877,627 - 86,885,584 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01480,510,244 - 80,519,046 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,372,275 - 87,378,266 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11487,391,420 - 87,397,411 (-)NCBI
Celera1480,364,375 - 80,370,366 (-)NCBICelera
Cytogenetic Map14q21NCBI
Tbrg4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,199,560 - 7,208,808 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,197,690 - 7,207,102 (+)NCBIChiLan1.0ChiLan1.0
TBRG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2650,012,972 - 50,025,481 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1798,337,710 - 98,349,655 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,813,586 - 45,825,311 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,879,666 - 45,891,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,879,666 - 45,891,351 (-)Ensemblpanpan1.1panPan2
TBRG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,628,800 - 2,637,420 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,223,466 - 14,232,086 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,223,504 - 14,233,730 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01613,856,374 - 13,864,994 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,835,830 - 13,844,452 (+)NCBIUU_Cfam_GSD_1.0
Tbrg4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,694,500 - 100,704,165 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,902,337 - 19,915,858 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,906,227 - 19,915,815 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBRG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,365,988 - 50,378,084 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,366,896 - 50,378,086 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,197,834 - 55,209,038 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBRG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,570,061 - 13,581,824 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2113,570,127 - 13,581,612 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660628,947,494 - 8,959,522 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbrg4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,277,180 - 7,286,338 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,277,254 - 7,287,073 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tbrg4
388 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1842
Count of miRNA genes:702
Interacting mature miRNAs:889
Transcripts:ENSMUST00000000394, ENSMUST00000131313, ENSMUST00000131477, ENSMUST00000131815, ENSMUST00000132446, ENSMUST00000134016, ENSMUST00000136682, ENSMUST00000144463, ENSMUST00000150697, ENSMUST00000151008, ENSMUST00000156969
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse

Markers in Region
RH124657  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,616,441 - 6,616,603UniSTSGRCm38
MGSCv37116,516,444 - 6,516,606UniSTSGRCm37
Celera1118,689,667 - 18,689,829UniSTS
Celera1118,412,592 - 18,412,754UniSTS
Cytogenetic Map11A1UniSTS
RH125123  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,615,650 - 6,615,806UniSTSGRCm38
MGSCv37116,515,653 - 6,515,809UniSTSGRCm37
Celera1118,688,876 - 18,689,032UniSTS
Celera1118,411,801 - 18,411,957UniSTS
Cytogenetic Map11A1UniSTS
RH125754  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,616,437 - 6,616,686UniSTSGRCm38
MGSCv37116,516,440 - 6,516,689UniSTSGRCm37
Celera1118,689,663 - 18,689,912UniSTS
Celera1118,412,588 - 18,412,837UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1135.29UniSTS
AI527316  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,615,889 - 6,616,082UniSTSGRCm38
MGSCv37116,515,892 - 6,516,085UniSTSGRCm37
Celera1118,689,115 - 18,689,308UniSTS
Celera1118,412,040 - 18,412,233UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1134.61UniSTS
UniSTS:224891  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,615,651 - 6,615,803UniSTSGRCm38
MGSCv37116,515,654 - 6,515,806UniSTSGRCm37
Celera1118,688,877 - 18,689,029UniSTS
Celera1118,411,802 - 18,411,954UniSTS
Cytogenetic Map11A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK028966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB727683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY784127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS033269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U89434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000000394   ⟹   ENSMUSP00000000394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,566,423 - 6,576,043 (-)Ensembl
GRCm38.p6 Ensembl116,616,423 - 6,626,043 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,570,180 - 6,571,065 (-)Ensembl
GRCm38.p6 Ensembl116,620,180 - 6,621,065 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,569,556 - 6,570,915 (-)Ensembl
GRCm38.p6 Ensembl116,619,556 - 6,620,915 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,573,200 - 6,576,022 (-)Ensembl
GRCm38.p6 Ensembl116,623,200 - 6,626,022 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,569,586 - 6,570,445 (-)Ensembl
GRCm38.p6 Ensembl116,619,586 - 6,620,445 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,567,254 - 6,568,030 (-)Ensembl
GRCm38.p6 Ensembl116,617,254 - 6,618,030 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136682   ⟹   ENSMUSP00000114174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,570,997 - 6,576,067 (-)Ensembl
GRCm38.p6 Ensembl116,620,997 - 6,626,067 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144463   ⟹   ENSMUSP00000120103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,573,885 - 6,575,459 (-)Ensembl
GRCm38.p6 Ensembl116,623,885 - 6,625,459 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150697   ⟹   ENSMUSP00000123131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,566,425 - 6,576,043 (-)Ensembl
GRCm38.p6 Ensembl116,616,425 - 6,626,043 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,570,002 - 6,571,251 (-)Ensembl
GRCm38.p6 Ensembl116,620,002 - 6,621,251 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156969   ⟹   ENSMUSP00000114256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,565,598 - 6,576,043 (-)Ensembl
GRCm38.p6 Ensembl116,615,598 - 6,626,043 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189268   ⟹   ENSMUSP00000140835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,565,599 - 6,576,067 (-)Ensembl
GRCm38.p6 Ensembl116,615,599 - 6,626,067 (-)Ensembl
RefSeq Acc Id: NM_001130457   ⟹   NP_001123929
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,576,067 (-)NCBI
GRCm38116,615,598 - 6,626,067 (-)NCBI
MGSCv37116,515,601 - 6,526,070 (-)RGD
Celera1118,688,824 - 18,699,295 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362713   ⟹   NP_001349642
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,575,612 (-)NCBI
GRCm38116,615,598 - 6,625,612 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362714   ⟹   NP_001349643
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,575,612 (-)NCBI
GRCm38116,615,598 - 6,625,612 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362715   ⟹   NP_001349644
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,575,612 (-)NCBI
GRCm38116,615,598 - 6,625,612 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362716   ⟹   NP_001349645
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,575,612 (-)NCBI
GRCm38116,615,598 - 6,625,612 (-)NCBI
Sequence:
RefSeq Acc Id: NM_134011   ⟹   NP_598772
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,576,067 (-)NCBI
GRCm38116,615,598 - 6,626,067 (-)NCBI
MGSCv37116,515,601 - 6,526,070 (-)RGD
Celera1118,688,824 - 18,699,295 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514607   ⟹   XP_006514670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,576,089 (-)NCBI
GRCm38116,615,598 - 6,626,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243672   ⟹   XP_011241974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,576,081 (-)NCBI
GRCm38116,615,598 - 6,626,082 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779944
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,565,598 - 6,576,081 (-)NCBI
GRCm38116,615,598 - 6,626,082 (-)NCBI
Sequence:
RefSeq Acc Id: NP_598772   ⟸   NM_134011
- Peptide Label: isoform 1
- UniProtKB: Q6ZQ19 (UniProtKB/Swiss-Prot),   Q3TKZ4 (UniProtKB/Swiss-Prot),   O89082 (UniProtKB/Swiss-Prot),   Q8C6D1 (UniProtKB/Swiss-Prot),   Q91YM4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001123929   ⟸   NM_001130457
- Peptide Label: isoform 1
- UniProtKB: Q6ZQ19 (UniProtKB/Swiss-Prot),   Q3TKZ4 (UniProtKB/Swiss-Prot),   O89082 (UniProtKB/Swiss-Prot),   Q8C6D1 (UniProtKB/Swiss-Prot),   Q91YM4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514670   ⟸   XM_006514607
- Peptide Label: isoform X1
- UniProtKB: Q6ZQ19 (UniProtKB/Swiss-Prot),   Q3TKZ4 (UniProtKB/Swiss-Prot),   O89082 (UniProtKB/Swiss-Prot),   Q8C6D1 (UniProtKB/Swiss-Prot),   Q91YM4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011241974   ⟸   XM_011243672
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001349643   ⟸   NM_001362714
- Peptide Label: isoform 1
- UniProtKB: Q91YM4 (UniProtKB/Swiss-Prot),   Q6ZQ19 (UniProtKB/Swiss-Prot),   Q3TKZ4 (UniProtKB/Swiss-Prot),   O89082 (UniProtKB/Swiss-Prot),   Q8C6D1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001349642   ⟸   NM_001362713
- Peptide Label: isoform 1
- UniProtKB: Q91YM4 (UniProtKB/Swiss-Prot),   Q6ZQ19 (UniProtKB/Swiss-Prot),   Q3TKZ4 (UniProtKB/Swiss-Prot),   O89082 (UniProtKB/Swiss-Prot),   Q8C6D1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001349645   ⟸   NM_001362716
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001349644   ⟸   NM_001362715
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000123131   ⟸   ENSMUST00000150697
RefSeq Acc Id: ENSMUSP00000120103   ⟸   ENSMUST00000144463
RefSeq Acc Id: ENSMUSP00000000394   ⟸   ENSMUST00000000394
RefSeq Acc Id: ENSMUSP00000114256   ⟸   ENSMUST00000156969
RefSeq Acc Id: ENSMUSP00000114174   ⟸   ENSMUST00000136682
RefSeq Acc Id: ENSMUSP00000140835   ⟸   ENSMUST00000189268
Protein Domains
RAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91YM4-F1-model_v2 AlphaFold Q91YM4 1-630 view protein structure

Promoters
RGD ID:6822289
Promoter ID:MM_KWN:6379
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Liver
Transcripts:OTTMUST00000011457
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,518,424 - 6,518,924 (-)MPROMDB
RGD ID:6820806
Promoter ID:MM_KWN:6380
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Liver
Transcripts:ENSMUST00000082561,   ENSMUST00000083752,   OTTMUST00000011458,   OTTMUST00000011459,   OTTMUST00000011460,   OTTMUST00000011461
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,520,136 - 6,521,732 (-)MPROMDB
RGD ID:6822291
Promoter ID:MM_KWN:6381
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   ES_Cell
Transcripts:ENSMUST00000093343
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,524,241 - 6,525,012 (-)MPROMDB
RGD ID:6822290
Promoter ID:MM_KWN:6382
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4
Transcripts:OTTMUST00000011464
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,525,564 - 6,526,064 (-)MPROMDB
RGD ID:6820695
Promoter ID:MM_KWN:6383
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK089624_D030016M11RIK,   NM_001130457,   NM_134011,   OTTMUST00000011456,   OTTMUST00000011465,   OTTMUST00000072735,   OTTMUST00000072736
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,526,031 - 6,527,737 (+)MPROMDB
RGD ID:8673922
Promoter ID:EPDNEW_M14991
Type:initiation region
Name:Tbrg4_1
Description:Mus musculus transforming growth factor beta regulated gene 4, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,626,064 - 6,626,124EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1100868 AgrOrtholog
Ensembl Genes ENSMUSG00000000384 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000000394 ENTREZGENE
  ENSMUST00000000394.14 UniProtKB/Swiss-Prot
  ENSMUST00000136682.8 UniProtKB/TrEMBL
  ENSMUST00000144463.2 UniProtKB/TrEMBL
  ENSMUST00000150697 ENTREZGENE
  ENSMUST00000150697.8 UniProtKB/TrEMBL
  ENSMUST00000156969.8 UniProtKB/Swiss-Prot
  ENSMUST00000189268 ENTREZGENE
  ENSMUST00000189268.7 UniProtKB/Swiss-Prot
InterPro ARM-type_fold UniProtKB/Swiss-Prot
  FAST_2 UniProtKB/Swiss-Prot
  FAST_Leu-rich UniProtKB/Swiss-Prot
  RAP UniProtKB/Swiss-Prot
KEGG Report mmu:21379 UniProtKB/Swiss-Prot
MGD MGI:1100868 ENTREZGENE
NCBI Gene 21379 ENTREZGENE
PANTHER FAST KINASE DOMAIN-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAST LEU-RICH DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAST_1 UniProtKB/Swiss-Prot
  FAST_2 UniProtKB/Swiss-Prot
  RAP UniProtKB/Swiss-Prot
PhenoGen Tbrg4 PhenoGen
PROSITE RAP UniProtKB/Swiss-Prot
SMART RAP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt E9PUT1_MOUSE UniProtKB/TrEMBL
  FAKD4_MOUSE UniProtKB/Swiss-Prot
  O89082 ENTREZGENE
  Q3TKZ4 ENTREZGENE
  Q5SWP0_MOUSE UniProtKB/TrEMBL
  Q5SWP1_MOUSE UniProtKB/TrEMBL
  Q6ZQ19 ENTREZGENE
  Q8C6D1 ENTREZGENE
  Q91YM4 ENTREZGENE
UniProt Secondary O89082 UniProtKB/Swiss-Prot
  Q3TKZ4 UniProtKB/Swiss-Prot
  Q6ZQ19 UniProtKB/Swiss-Prot
  Q8C6D1 UniProtKB/Swiss-Prot