Polr1c (polymerase (RNA) I polypeptide C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Polr1c (polymerase (RNA) I polypeptide C) Mus musculus
Analyze
Symbol: Polr1c
Name: polymerase (RNA) I polypeptide C
RGD ID: 1320171
MGI Page MGI
Description: Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and protein dimerization activity. Predicted to contribute to RNA polymerase I activity and RNA polymerase III activity. Predicted to be involved in DNA-templated transcription. Part of RNA polymerase I complex. Is expressed in several structures, including alimentary system; genitourinary system; midbrain; respiratory system; and telencephalon. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 3 and hypomyelinating leukodystrophy 11. Orthologous to human POLR1C (RNA polymerase I and III subunit C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40kD; 40kDa; AA409007; AA959927; AC40; AL024089; DNA-directed RNA polymerase I subunit C; DNA-directed RNA polymerases I and III 40 kDa polypeptide; DNA-directed RNA polymerases I and III subunit RPAC1; MGC161175; Polr1e; RNA polymerase 1-1 (40 kDa subunit); RNA polymerases I and III subunit AC1; RP; RPA40; RPC40; Rpo; Rpo1-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,554,846 - 46,558,971 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,554,846 - 46,558,980 (-)EnsemblGRCm39 Ensembl
GRCm381746,243,920 - 46,248,045 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,243,920 - 46,248,054 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,380,869 - 46,384,994 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,707,509 - 45,711,545 (-)NCBIMGSCv36mm8
Celera1749,677,058 - 49,681,183 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
2. Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. Hu P, etal., Mol Cell Biol. 2002 Nov;22(22):8044-55.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
10. Molecular cloning of RPA2, the gene encoding the second largest subunit of mouse RNA polymerase I. Seither P and Grummt I, Genomics 1996 Oct 1;37(1):135-9.
11. Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Vannini A and Cramer P, Mol Cell. 2012 Feb 24;45(4):439-46. doi: 10.1016/j.molcel.2012.01.023.
12. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:7671812   PMID:7929437   PMID:9099876   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273  
PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21194568   PMID:21267068   PMID:21677750   PMID:21873635   PMID:27746211   PMID:28378742   PMID:32325033  
PMID:35881792  


Genomics

Comparative Map Data
Polr1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,554,846 - 46,558,971 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,554,846 - 46,558,980 (-)EnsemblGRCm39 Ensembl
GRCm381746,243,920 - 46,248,045 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,243,920 - 46,248,054 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,380,869 - 46,384,994 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,707,509 - 45,711,545 (-)NCBIMGSCv36mm8
Celera1749,677,058 - 49,681,183 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
POLR1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,517,089 - 44,461,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,509,702 - 43,562,419 (+)EnsemblGRCh38hg38GRCh38
GRCh37643,484,827 - 44,429,137 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,592,769 - 43,605,092 (+)NCBINCBI36Build 36hg18NCBI36
Celera645,036,412 - 45,048,735 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,202,730 - 43,208,225 (+)NCBIHuRef
CHM1_1643,487,909 - 43,492,383 (+)NCBICHM1_1
T2T-CHM13v2.0643,345,828 - 44,296,039 (+)NCBIT2T-CHM13v2.0
Polr1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,233,318 - 22,237,430 (+)NCBIGRCr8
mRatBN7.2914,735,740 - 14,739,852 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,735,714 - 14,739,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,319,979 - 23,324,091 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,382,463 - 28,386,575 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,683,367 - 26,687,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,120,759 - 17,124,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,120,759 - 17,124,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,017,436 - 16,021,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,298,309 - 10,302,421 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,295,630 - 10,299,743 (+)NCBI
Celera912,483,058 - 12,487,170 (+)NCBICelera
Cytogenetic Map9q12NCBI
Polr1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,346,397 - 9,350,591 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,346,397 - 9,350,591 (+)NCBIChiLan1.0ChiLan1.0
POLR1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,009,906 - 58,029,793 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,879,703 - 53,899,579 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,101,771 - 43,121,460 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,399,936 - 44,404,420 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,395,787 - 44,412,257 (+)Ensemblpanpan1.1panPan2
POLR1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,978,337 - 11,982,265 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,978,422 - 12,008,579 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,004,514 - 12,008,441 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,461,954 - 12,465,881 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,462,031 - 12,509,169 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,987,354 - 11,991,281 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,074,263 - 12,078,191 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,167,748 - 12,171,676 (+)NCBIUU_Cfam_GSD_1.0
Polr1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,472,764 - 47,476,677 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,480,835 - 16,487,424 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,483,203 - 16,487,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,507,073 - 38,537,943 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,511,521 - 38,531,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,092,595 - 44,111,879 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLR1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,637,868 - 28,649,898 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604443,572,869 - 43,577,363 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,122,935 - 16,136,395 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,125,322 - 16,129,339 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Polr1c
81 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1423
Count of miRNA genes:663
Interacting mature miRNAs:796
Transcripts:ENSMUST00000087026, ENSMUST00000124126, ENSMUST00000124655, ENSMUST00000142706, ENSMUST00000152583, ENSMUST00000173232, ENSMUST00000173349, ENSMUST00000174392
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
4141478Hbnr7_mHeligmosomoides bakeri nematode resistance 7 (mouse)Not determined4305118551739122Mouse
25394539Skmw85_mskeletal muscle weight 85, gastroc (mouse)174370766846831957Mouse
26884386Skwq13_mskull length QTL 13, 16 week (mouse)174371089153107028Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
12903997Cfq4_mconditioned fear QTL 4 (mouse)174501655249366402Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse

Markers in Region
D31966  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381746,243,931 - 46,244,035UniSTSGRCm38
MGSCv371746,380,880 - 46,380,984UniSTSGRCm37
Celera1749,677,069 - 49,677,173UniSTS
Cytogenetic Map17CUniSTS
Whitehead_YAC17 UniSTS
AA959927  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381746,244,115 - 46,244,363UniSTSGRCm38
MGSCv371746,381,064 - 46,381,312UniSTSGRCm37
Celera1749,677,253 - 49,677,501UniSTS
Cytogenetic Map17CUniSTS
Whitehead/MRC_RH17570.01UniSTS
RH124806  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381746,243,937 - 46,244,166UniSTSGRCm38
MGSCv371746,380,886 - 46,381,115UniSTSGRCm37
Celera1749,677,075 - 49,677,304UniSTS
Cytogenetic Map17CUniSTS
RH125475  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381746,244,050 - 46,244,180UniSTSGRCm38
MGSCv371746,380,999 - 46,381,129UniSTSGRCm37
Celera1749,677,188 - 49,677,318UniSTS
Cytogenetic Map17CUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000087026   ⟹   ENSMUSP00000084252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,554,846 - 46,558,980 (-)Ensembl
GRCm38.p6 Ensembl1746,243,920 - 46,248,054 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,558,225 - 46,558,894 (-)Ensembl
GRCm38.p6 Ensembl1746,247,299 - 46,247,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124655   ⟹   ENSMUSP00000122026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,555,027 - 46,557,499 (-)Ensembl
GRCm38.p6 Ensembl1746,244,101 - 46,246,573 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142706   ⟹   ENSMUSP00000116998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,555,539 - 46,558,894 (-)Ensembl
GRCm38.p6 Ensembl1746,244,613 - 46,247,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,555,450 - 46,558,858 (-)Ensembl
GRCm38.p6 Ensembl1746,244,524 - 46,247,932 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173232   ⟹   ENSMUSP00000133597
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,555,859 - 46,558,894 (-)Ensembl
GRCm38.p6 Ensembl1746,244,933 - 46,247,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173349   ⟹   ENSMUSP00000133861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,555,761 - 46,558,894 (-)Ensembl
GRCm38.p6 Ensembl1746,244,835 - 46,247,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1746,556,188 - 46,558,893 (-)Ensembl
GRCm38.p6 Ensembl1746,245,262 - 46,247,967 (-)Ensembl
RefSeq Acc Id: NM_009085   ⟹   NP_033111
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391746,554,846 - 46,558,971 (-)NCBI
GRCm381746,243,920 - 46,248,045 (-)ENTREZGENE
MGSCv371746,380,869 - 46,384,994 (-)RGD
Celera1749,677,058 - 49,681,183 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033111   ⟸   NM_009085
- UniProtKB: Q3UJZ9 (UniProtKB/Swiss-Prot),   P52432 (UniProtKB/Swiss-Prot),   A1L3C2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000122026   ⟸   ENSMUST00000124655
RefSeq Acc Id: ENSMUSP00000084252   ⟸   ENSMUST00000087026
RefSeq Acc Id: ENSMUSP00000133597   ⟸   ENSMUST00000173232
RefSeq Acc Id: ENSMUSP00000133861   ⟸   ENSMUST00000173349
RefSeq Acc Id: ENSMUSP00000116998   ⟸   ENSMUST00000142706
Protein Domains
DNA-directed RNA polymerase RpoA/D/Rpb3-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52432-F1-model_v2 AlphaFold P52432 1-346 view protein structure

Promoters
RGD ID:13676204
Promoter ID:EPDNEW_M22251
Type:multiple initiation site
Name:Polr1c_1
Description:Mus musculus polymerase I polypeptide C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381746,247,985 - 46,248,045EPDNEW
RGD ID:6848691
Promoter ID:MM_TRO:4392
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   Brain,   ES_Cell
Transcripts:MTR009529.17.1389.2
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361746,381,141 - 46,381,641 (-)MPROMDB
RGD ID:6828487
Promoter ID:MM_KWN:23622
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000072304
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361746,383,156 - 46,384,457 (-)MPROMDB
RGD ID:6828489
Promoter ID:MM_KWN:23623
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_145353,   OTTMUST00000071424,   OTTMUST00000071492,   OTTMUST00000071518,   OTTMUST00000071519,   OTTMUST00000071520,   OTTMUST00000071521
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361746,384,669 - 46,385,169 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103288 AgrOrtholog
Ensembl Genes ENSMUSG00000067148 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000087026 ENTREZGENE
  ENSMUST00000087026.13 UniProtKB/Swiss-Prot
  ENSMUST00000124655.8 UniProtKB/TrEMBL
  ENSMUST00000142706.9 UniProtKB/TrEMBL
  ENSMUST00000173232.2 UniProtKB/TrEMBL
  ENSMUST00000173349.8 UniProtKB/TrEMBL
Gene3D-CATH 2.170.120.12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1360.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DNA-dir_RNA_pol_30-40kDasu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA-dir_RNA_pol_insert UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA-dir_RNA_pol_RpoA/D/Rpb3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBP11-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNAP_Rpo3/Rpb3/RPAC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNAPI/II_AC40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNApol_insert_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20016 UniProtKB/Swiss-Prot
MGD MGI:103288 ENTREZGENE
NCBI Gene 20016 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11800:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RNA_pol_A_bac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_pol_L UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Polr1c PhenoGen
PROSITE RNA_POL_D_30KD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RPOLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55257 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56553 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A1L3C2 ENTREZGENE, UniProtKB/TrEMBL
  D3Z3D6_MOUSE UniProtKB/TrEMBL
  D3Z7Q8_MOUSE UniProtKB/TrEMBL
  G3UX92_MOUSE UniProtKB/TrEMBL
  G3UXX5_MOUSE UniProtKB/TrEMBL
  P52432 ENTREZGENE
  Q3UJZ9 ENTREZGENE
  RPAC1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UJZ9 UniProtKB/Swiss-Prot