Efcab5 (EF-hand calcium binding domain 5) - Rat Genome Database

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Gene: Efcab5 (EF-hand calcium binding domain 5) Mus musculus
Analyze
Symbol: Efcab5
Name: EF-hand calcium binding domain 5
RGD ID: 1320103
MGI Page MGI
Description: Predicted to have calcium ion binding activity. Orthologous to human EFCAB5 (EF-hand calcium binding domain 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; potassium dichromate; tetrachloroethene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 4930563A03Rik; EF-hand calcium-binding domain-containing protein 5; MGC156377; RP23-100P23.5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,980,236 - 77,106,926 (-)NCBIGRCm39mm39
GRCm39 Ensembl1176,980,741 - 77,079,794 (-)Ensembl
GRCm381177,089,904 - 77,216,227 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,089,915 - 77,188,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,903,417 - 77,002,470 (-)NCBIGRCm37mm9NCBIm37
MGSCv361176,906,110 - 76,968,165 (-)NCBImm8
Celera1184,588,147 - 84,687,633 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16183747  


Genomics

Comparative Map Data
Efcab5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,980,236 - 77,106,926 (-)NCBIGRCm39mm39
GRCm39 Ensembl1176,980,741 - 77,079,794 (-)Ensembl
GRCm381177,089,904 - 77,216,227 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,089,915 - 77,188,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,903,417 - 77,002,470 (-)NCBIGRCm37mm9NCBIm37
MGSCv361176,906,110 - 76,968,165 (-)NCBImm8
Celera1184,588,147 - 84,687,633 (-)NCBICelera
Cytogenetic Map11B5NCBI
EFCAB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1729,929,200 - 30,108,452 (+)EnsemblGRCh38hg38GRCh38
GRCh381729,929,903 - 30,108,452 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371728,256,921 - 28,435,470 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361725,292,812 - 25,459,596 (+)NCBINCBI36hg18NCBI36
Celera1725,116,847 - 25,297,005 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1724,466,461 - 24,645,857 (+)NCBIHuRef
CHM1_11728,319,344 - 28,497,966 (+)NCBICHM1_1
Efcab5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21061,926,031 - 62,041,708 (-)NCBI
Rnor_6.0 Ensembl1062,981,297 - 63,085,308 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01062,970,645 - 63,086,704 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01062,667,812 - 62,784,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41066,770,464 - 66,846,773 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11066,784,344 - 66,860,573 (-)NCBI
Celera1060,933,235 - 61,047,411 (-)NCBICelera
Cytogenetic Map10q24NCBI
Efcab5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,208,190 - 3,356,686 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554813,207,789 - 3,381,228 (-)NCBIChiLan1.0ChiLan1.0
EFCAB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11727,179,510 - 27,364,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1727,179,510 - 27,352,621 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01726,661,188 - 26,846,483 (-)NCBIMhudiblu_PPA_v0panPan3
EFCAB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,965,945 - 44,147,530 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,992,000 - 44,147,459 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha943,117,999 - 43,299,226 (+)NCBI
ROS_Cfam_1.0944,780,929 - 44,965,654 (+)NCBI
UMICH_Zoey_3.1943,565,412 - 43,746,667 (+)NCBI
UNSW_CanFamBas_1.0943,856,366 - 44,033,229 (+)NCBI
UU_Cfam_GSD_1.0943,936,399 - 44,117,709 (+)NCBI
Efcab5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560243,126,616 - 43,254,273 (+)NCBI
SpeTri2.0NW_0049365386,001,412 - 6,131,835 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFCAB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,085,525 - 46,205,062 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,085,215 - 46,204,806 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21248,293,563 - 48,344,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFCAB5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11623,666,814 - 23,845,314 (+)NCBI
ChlSab1.1 Ensembl1623,762,444 - 23,844,886 (+)Ensembl
Efcab5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247862,438,922 - 2,588,830 (+)NCBI

Position Markers
BB287977  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381177,090,017 - 77,090,114UniSTSGRCm38
MGSCv371176,903,519 - 76,903,616UniSTSGRCm37
Celera1184,588,249 - 84,588,346UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11962.33UniSTS
MARC_4129-4130:996679399:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,415,521 - 171,416,223UniSTSGRCm38
GRCm381177,149,649 - 77,149,856UniSTSGRCm38
MGSCv371173,345,652 - 173,346,354UniSTSGRCm37
MGSCv371176,963,151 - 76,963,358UniSTSGRCm37
Celera1184,648,431 - 84,648,638UniSTS
Celera1173,866,884 - 173,867,585UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map1HUniSTS
cM Map193.3UniSTS
Usf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381177,150,055 - 77,150,995UniSTSGRCm38
MGSCv371176,963,557 - 76,964,497UniSTSGRCm37
Celera1184,648,837 - 84,649,777UniSTS
Cytogenetic Map1HUniSTS
Cytogenetic Map11B5UniSTS
cM Map193.3UniSTS
cM Map193.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:464
Count of miRNA genes:315
Interacting mature miRNAs:362
Transcripts:ENSMUST00000108400, ENSMUST00000130901, ENSMUST00000148985, ENSMUST00000151731, ENSMUST00000155085
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_176965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK029790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX321897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DT929470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000108400   ⟹   ENSMUSP00000104037
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,089,915 - 77,188,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130901   ⟹   ENSMUSP00000118152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,090,185 - 77,151,925 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148985
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,102,720 - 77,137,793 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,089,944 - 77,103,062 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155085
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,151,818 - 77,168,916 (-)Ensembl
RefSeq Acc Id: NM_176965   ⟹   NP_795939
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,741 - 77,079,794 (-)NCBI
GRCm381177,089,915 - 77,188,968 (-)NCBI
MGSCv371176,903,417 - 77,002,470 (-)RGD
Celera1184,588,147 - 84,687,633 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314592   ⟹   XP_017170081
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,090 (-)NCBI
GRCm381177,089,904 - 77,201,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314594   ⟹   XP_017170083
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,089,885 (-)NCBI
GRCm381177,089,904 - 77,199,059 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314595   ⟹   XP_017170084
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,088,840 (-)NCBI
GRCm381177,089,904 - 77,197,089 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314599   ⟹   XP_017170088
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,098 (-)NCBI
GRCm381177,089,904 - 77,201,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314600   ⟹   XP_017170089
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,106,926 (-)NCBI
GRCm381177,089,904 - 77,216,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314601   ⟹   XP_017170090
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,044,809 (-)NCBI
GRCm381177,089,904 - 77,153,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246079   ⟹   XP_030101939
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,091 (-)NCBI
GRCm381177,089,904 - 77,201,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246080   ⟹   XP_030101940
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,090 (-)NCBI
GRCm381177,089,904 - 77,201,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246081   ⟹   XP_030101941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,106,926 (-)NCBI
GRCm381177,089,904 - 77,216,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246082   ⟹   XP_030101942
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,106,926 (-)NCBI
GRCm381177,089,904 - 77,216,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246083   ⟹   XP_030101943
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,093 (-)NCBI
GRCm381177,089,904 - 77,201,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246084   ⟹   XP_030101944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,098 (-)NCBI
GRCm381177,089,904 - 77,201,244 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949461
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,099 (-)NCBI
GRCm381177,089,904 - 77,201,245 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949462
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,106,926 (-)NCBI
GRCm381177,089,904 - 77,216,227 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936976
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,980,236 - 77,092,222 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_795939   ⟸   NM_176965
- UniProtKB: A0JP43 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170089   ⟸   XM_017314600
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017170088   ⟸   XM_017314599
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017170081   ⟸   XM_017314592
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017170083   ⟸   XM_017314594
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017170084   ⟸   XM_017314595
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017170090   ⟸   XM_017314601
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_030101942   ⟸   XM_030246082
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030101941   ⟸   XM_030246081
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030101944   ⟸   XM_030246084
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030101943   ⟸   XM_030246083
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030101939   ⟸   XM_030246079
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030101940   ⟸   XM_030246080
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000118152   ⟸   ENSMUST00000130901
RefSeq Acc Id: ENSMUSP00000104037   ⟸   ENSMUST00000108400
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442440 AgrOrtholog
Ensembl Genes ENSMUSG00000050944 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000104037 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118152 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000108400 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130901 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAF-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319634 UniProtKB/Swiss-Prot
MGD MGI:2442440 ENTREZGENE
NCBI Gene 319634 ENTREZGENE
PhenoGen Efcab5 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MQI1_MOUSE UniProtKB/TrEMBL
  A0JP43 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B0QZJ9 UniProtKB/Swiss-Prot
  Q5NC53 UniProtKB/Swiss-Prot
  Q8CBN1 UniProtKB/Swiss-Prot
  Q8CDP1 UniProtKB/Swiss-Prot