Fam193a (family with sequence homology 193, member A) - Rat Genome Database

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Gene: Fam193a (family with sequence homology 193, member A) Mus musculus
Analyze
Symbol: Fam193a
Name: family with sequence homology 193, member A
RGD ID: 1320078
MGI Page MGI
Description: Orthologous to human FAM193A (family with sequence similarity 193 member A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: family with sequence similarity 193, member A; hypothetical protein LOC231128; MGC106708
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,527,295 - 34,643,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,527,277 - 34,643,800 (+)EnsemblGRCm39 Ensembl
GRCm38534,369,933 - 34,486,458 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,369,933 - 34,486,456 (+)EnsemblGRCm38mm10GRCm38
MGSCv37534,763,500 - 34,829,105 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36534,737,708 - 34,803,313 (+)NCBIMGSCv36mm8
Celera531,891,761 - 31,957,359 (+)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14691545  
PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:29091030   PMID:31040226   PMID:31138677   PMID:32325033  


Genomics

Comparative Map Data
Fam193a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,527,295 - 34,643,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,527,277 - 34,643,800 (+)EnsemblGRCm39 Ensembl
GRCm38534,369,933 - 34,486,458 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,369,933 - 34,486,456 (+)EnsemblGRCm38mm10GRCm38
MGSCv37534,763,500 - 34,829,105 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36534,737,708 - 34,803,313 (+)NCBIMGSCv36mm8
Celera531,891,761 - 31,957,359 (+)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.88NCBI
FAM193A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3842,535,375 - 2,732,573 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl42,536,647 - 2,732,573 (+)EnsemblGRCh38hg38GRCh38
GRCh3742,537,102 - 2,734,300 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3642,596,957 - 2,704,100 (+)NCBINCBI36Build 36hg18NCBI36
Build 3442,664,364 - 2,771,507NCBI
Celera42,538,459 - 2,645,603 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef42,566,408 - 2,673,398 (+)NCBIHuRef
CHM1_142,625,112 - 2,732,275 (+)NCBICHM1_1
T2T-CHM13v2.042,534,120 - 2,731,332 (+)NCBIT2T-CHM13v2.0
Fam193a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,480,742 - 80,607,086 (-)NCBIGRCr8
mRatBN7.21476,250,103 - 76,382,525 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1476,256,161 - 76,382,514 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01481,515,897 - 81,638,919 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,516,407 - 81,638,934 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01482,203,381 - 82,326,333 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01482,583,510 - 82,593,446 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41481,898,783 - 81,981,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11481,901,167 - 81,955,170 (-)NCBI
Celera1475,180,670 - 75,306,206 (-)NCBICelera
Cytogenetic Map14q21NCBI
Fam193a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555141,588,894 - 1,672,292 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555141,588,882 - 1,672,292 (+)NCBIChiLan1.0ChiLan1.0
FAM193A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v232,871,773 - 3,068,236 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan142,806,017 - 3,004,143 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v042,678,935 - 2,875,203 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.142,584,369 - 2,777,767 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl42,641,979 - 2,777,761 (+)Ensemblpanpan1.1panPan2
FAM193A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,543,738 - 61,674,729 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,544,354 - 61,644,322 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,126,947 - 64,291,419 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0362,019,542 - 62,184,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl362,019,542 - 62,089,617 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,510,589 - 61,675,269 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,715,556 - 61,880,952 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0362,075,411 - 62,240,712 (-)NCBIUU_Cfam_GSD_1.0
Fam193a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528567,173,199 - 67,262,618 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647720,871,241 - 20,964,352 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647720,874,889 - 20,964,328 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM193A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,388,266 - 1,523,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,388,442 - 1,523,935 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.281,022,753 - 1,106,802 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM193A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12746,028,534 - 46,227,991 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2746,028,533 - 46,168,051 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660512,392,353 - 2,530,379 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam193a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,996,270 - 25,133,961 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,996,262 - 25,133,918 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam193a
3598 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1101
Count of miRNA genes:626
Interacting mature miRNAs:765
Transcripts:ENSMUST00000094867, ENSMUST00000180376, ENSMUST00000181379
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse

Markers in Region
SHGC-67346  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38534,485,748 - 34,485,970UniSTSGRCm38
MGSCv37534,828,397 - 34,828,619UniSTSGRCm37
Celera531,956,651 - 31,956,873UniSTS
Cytogenetic Map5B2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000094867   ⟹   ENSMUSP00000092463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl534,583,681 - 34,643,091 (+)Ensembl
GRCm38.p6 Ensembl534,426,337 - 34,485,747 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180376   ⟹   ENSMUSP00000138082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl534,527,277 - 34,643,800 (+)Ensembl
GRCm38.p6 Ensembl534,369,933 - 34,486,456 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181379   ⟹   ENSMUSP00000137979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl534,623,473 - 34,635,033 (+)Ensembl
GRCm38.p6 Ensembl534,466,129 - 34,477,689 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201005   ⟹   ENSMUSP00000143885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl534,601,066 - 34,616,437 (+)Ensembl
GRCm38.p6 Ensembl534,443,722 - 34,459,093 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202503   ⟹   ENSMUSP00000143922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl534,588,563 - 34,600,972 (+)Ensembl
GRCm38.p6 Ensembl534,431,219 - 34,443,628 (+)Ensembl
RefSeq Acc Id: NM_001243123   ⟹   NP_001230052
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39534,527,295 - 34,643,800 (+)NCBI
GRCm38534,369,933 - 34,486,458 (+)ENTREZGENE
Celera531,881,475 - 31,957,361 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001230052   ⟸   NM_001243123
- UniProtKB: M0QWZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000143922   ⟸   ENSMUST00000202503
RefSeq Acc Id: ENSMUSP00000092463   ⟸   ENSMUST00000094867
RefSeq Acc Id: ENSMUSP00000143885   ⟸   ENSMUST00000201005
RefSeq Acc Id: ENSMUSP00000137979   ⟸   ENSMUST00000181379
RefSeq Acc Id: ENSMUSP00000138082   ⟸   ENSMUST00000180376
Protein Domains
FAM193 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CGI1-F1-model_v2 AlphaFold Q8CGI1 1-1231 view protein structure

Promoters
RGD ID:6886464
Promoter ID:EPDNEW_M6683
Type:initiation region
Name:Fam193a_1
Description:Mus musculus family with sequence similarity 193, member A ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38534,369,951 - 34,370,011EPDNEW
RGD ID:6837166
Promoter ID:MM_KWN:41962
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:UC008XCH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36534,763,266 - 34,763,766 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2447768 AgrOrtholog
Ensembl Genes ENSMUSG00000037210 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094867.8 UniProtKB/Swiss-Prot
  ENSMUST00000180376 ENTREZGENE
  ENSMUST00000180376.8 UniProtKB/TrEMBL
  ENSMUST00000181379.2 UniProtKB/TrEMBL
  ENSMUST00000201005.2 UniProtKB/TrEMBL
  ENSMUST00000202503.2 UniProtKB/TrEMBL
InterPro FAM193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAM193_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:231128 UniProtKB/Swiss-Prot
MGD MGI:2447768 ENTREZGENE
NCBI Gene 231128 ENTREZGENE
PANTHER PTHR15109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15109:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM193_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam193a PhenoGen
UniProt A0A0J9YTW8_MOUSE UniProtKB/TrEMBL
  A0A0J9YTZ5_MOUSE UniProtKB/TrEMBL
  F193A_MOUSE UniProtKB/Swiss-Prot
  M0QWS6_MOUSE UniProtKB/TrEMBL
  M0QWZ1 ENTREZGENE, UniProtKB/TrEMBL
  Q3UMC7_MOUSE UniProtKB/TrEMBL
  Q3V239_MOUSE UniProtKB/TrEMBL
  Q8CGI1 ENTREZGENE
UniProt Secondary Q499G1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 Fam193a  family with sequence homology 193, member A    family with sequence similarity 193, member A  Symbol and/or name change 5135510 APPROVED