Resf1 (retroelement silencing factor 1) - Rat Genome Database

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Gene: Resf1 (retroelement silencing factor 1) Mus musculus
Analyze
Symbol: Resf1
Name: retroelement silencing factor 1
RGD ID: 1320057
MGI Page MGI
Description: Enables histone methyltransferase binding activity. Involved in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate and positive regulation of DNA methylation-dependent heterochromatin formation. Acts upstream of or within response to bacterium. Located in nucleus. Part of gamma-tubulin complex. Is expressed in genitourinary system; limb; and somite. Orthologous to human RESF1 (retroelement silencing factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810474O19Rik; 6720435I21Rik; AA536804; AU020969; GET; hypothetical protein LOC67246; KIAA1551; likely orthologue of H. sapiens chromosome 12 open reading frame 35 (C12orf35); mKIAA1551; RIKEN cDNA 2810474O19 gene; RP23-214L4.1; uncharacterized protein C12orf35 homolog; uncharacterized protein KIAA1551
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,210,907 - 149,237,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,210,912 - 149,237,161 (+)EnsemblGRCm39 Ensembl
GRCm386149,309,409 - 149,335,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,309,414 - 149,335,663 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,257,936 - 149,284,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,266,601 - 149,292,826 (+)NCBIMGSCv36mm8
Celera6152,343,904 - 152,370,153 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IMP)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15741177  
PMID:15861396   PMID:16141072   PMID:16141073   PMID:17015433   PMID:17967808   PMID:18799693   PMID:20362541   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23012479   PMID:29728365  
PMID:34607919   PMID:38355793   PMID:38722825  


Genomics

Comparative Map Data
Resf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,210,907 - 149,237,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,210,912 - 149,237,161 (+)EnsemblGRCm39 Ensembl
GRCm386149,309,409 - 149,335,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,309,414 - 149,335,663 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,257,936 - 149,284,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,266,601 - 149,292,826 (+)NCBIMGSCv36mm8
Celera6152,343,904 - 152,370,153 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.89NCBI
RESF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,959,415 - 31,993,107 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,959,370 - 31,993,107 (+)EnsemblGRCh38hg38GRCh38
GRCh371232,112,349 - 32,146,041 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,003,620 - 32,037,308 (+)NCBINCBI36Build 36hg18NCBI36
Celera1211,934,148 - 11,967,834 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1231,863,530 - 31,897,223 (+)NCBIHuRef
CHM1_11232,078,356 - 32,112,040 (+)NCBICHM1_1
T2T-CHM13v2.01231,835,397 - 31,869,084 (+)NCBIT2T-CHM13v2.0
Resf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,057,165 - 184,093,374 (+)NCBIGRCr8
mRatBN7.24182,325,913 - 182,362,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,335,454 - 182,362,054 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04183,879,177 - 183,905,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,896,303 - 183,905,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,998,508 - 248,024,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,780,191 - 186,789,644 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14187,025,314 - 187,029,613 (+)NCBI
Celera4170,801,085 - 170,827,810 (+)NCBICelera
Cytogenetic Map4q44NCBI
Resf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555053,684,848 - 3,709,624 (-)NCBIChiLan1.0ChiLan1.0
RESF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21064,767,476 - 64,800,905 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11264,763,870 - 64,798,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01254,238,276 - 54,272,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11256,829,272 - 56,863,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1256,829,272 - 56,863,359 (-)Ensemblpanpan1.1panPan2
RESF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12716,829,611 - 16,856,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2716,829,968 - 16,839,166 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,560,294 - 29,589,056 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02717,009,033 - 17,037,820 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,009,052 - 17,037,829 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12716,819,667 - 16,848,433 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02716,852,789 - 16,881,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,714,347 - 29,743,126 (+)NCBIUU_Cfam_GSD_1.0
Resf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,414,879 - 77,441,069 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366074,247,824 - 4,274,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RESF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl542,261,304 - 42,299,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1542,263,560 - 42,299,596 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2545,546,617 - 45,582,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RESF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,402,505 - 31,436,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,402,760 - 31,436,533 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,503,661 - 3,537,420 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Resf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247784,192,168 - 4,224,027 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:503
Count of miRNA genes:369
Interacting mature miRNAs:398
Transcripts:ENSMUST00000046689, ENSMUST00000100765, ENSMUST00000127680, ENSMUST00000130664, ENSMUST00000137983
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
2810474O19Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv376149,276,773 - 149,277,569UniSTSGRCm37
Celera6152,362,741 - 152,363,537UniSTS
Cytogenetic Map6G3UniSTS
cM Map6 UniSTS
BE628502  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,326,413 - 149,326,533UniSTSGRCm38
MGSCv376149,274,935 - 149,275,055UniSTSGRCm37
Celera6152,360,903 - 152,361,023UniSTS
Cytogenetic Map6G3UniSTS
Whitehead/MRC_RH61501.08UniSTS
RH136339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,328,304 - 149,328,503UniSTSGRCm38
MGSCv376149,276,826 - 149,277,025UniSTSGRCm37
Celera6152,362,794 - 152,362,993UniSTS
Cytogenetic Map6G3UniSTS
RH124542  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,327,944 - 149,328,188UniSTSGRCm38
MGSCv376149,276,466 - 149,276,710UniSTSGRCm37
Celera6152,362,434 - 152,362,678UniSTS
Cytogenetic Map6G3UniSTS
UniSTS:235581  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,329,556 - 149,329,766UniSTSGRCm38
MGSCv376149,278,078 - 149,278,288UniSTSGRCm37
Celera6152,364,046 - 152,364,256UniSTS
Cytogenetic Map6G3UniSTS
BE105191  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,328,755 - 149,328,922UniSTSGRCm38
MGSCv376149,277,277 - 149,277,444UniSTSGRCm37
Celera6152,363,245 - 152,363,412UniSTS
Cytogenetic Map6G3UniSTS
2810474O19Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,328,251 - 149,329,047UniSTSGRCm38
MGSCv376149,276,773 - 149,277,569UniSTSGRCm37
Celera6152,362,741 - 152,363,537UniSTS
Cytogenetic Map6G3UniSTS
cM Map6 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB639048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV644998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000046689   ⟹   ENSMUSP00000041180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,926 - 149,237,161 (+)Ensembl
GRCm38.p6 Ensembl6149,309,428 - 149,335,663 (+)Ensembl
Ensembl Acc Id: ENSMUST00000100765   ⟹   ENSMUSP00000098328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,972 - 149,236,428 (+)Ensembl
GRCm38.p6 Ensembl6149,309,474 - 149,334,930 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127680   ⟹   ENSMUSP00000120770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,218,832 - 149,227,465 (+)Ensembl
GRCm38.p6 Ensembl6149,317,334 - 149,325,967 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130664   ⟹   ENSMUSP00000115573
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,912 - 149,228,169 (+)Ensembl
GRCm38.p6 Ensembl6149,309,414 - 149,326,671 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,211,071 - 149,211,953 (+)Ensembl
GRCm38.p6 Ensembl6149,309,573 - 149,310,455 (+)Ensembl
Ensembl Acc Id: ENSMUST00000185930   ⟹   ENSMUSP00000139593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,211,226 - 149,226,987 (+)Ensembl
GRCm38.p6 Ensembl6149,309,728 - 149,325,489 (+)Ensembl
Ensembl Acc Id: ENSMUST00000187881   ⟹   ENSMUSP00000140491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,226,154 - 149,227,271 (+)Ensembl
GRCm38.p6 Ensembl6149,324,656 - 149,325,773 (+)Ensembl
Ensembl Acc Id: ENSMUST00000189837   ⟹   ENSMUSP00000139660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,226,956 - 149,237,156 (+)Ensembl
GRCm38.p6 Ensembl6149,325,458 - 149,335,658 (+)Ensembl
Ensembl Acc Id: ENSMUST00000189932   ⟹   ENSMUSP00000140026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,972 - 149,236,428 (+)Ensembl
GRCm38.p6 Ensembl6149,309,474 - 149,334,930 (+)Ensembl
Ensembl Acc Id: ENSMUST00000190785   ⟹   ENSMUSP00000139624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,954 - 149,230,475 (+)Ensembl
GRCm38.p6 Ensembl6149,309,456 - 149,328,977 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,212,914 - 149,215,864 (+)Ensembl
GRCm38.p6 Ensembl6149,311,416 - 149,314,366 (+)Ensembl
RefSeq Acc Id: NM_001289661   ⟹   NP_001276590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,912 - 149,237,161 (+)NCBI
GRCm386149,309,414 - 149,335,663 (+)NCBI
Celera6152,343,904 - 152,370,153 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289662   ⟹   NP_001276591
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,912 - 149,237,161 (+)NCBI
GRCm386149,309,414 - 149,335,663 (+)NCBI
Celera6152,343,904 - 152,370,153 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026054   ⟹   NP_080330
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,912 - 149,237,161 (+)NCBI
GRCm386149,309,414 - 149,335,663 (+)NCBI
MGSCv376149,257,936 - 149,284,185 (+)RGD
Celera6152,343,904 - 152,370,153 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507081   ⟹   XP_006507144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,931 - 149,237,161 (+)NCBI
GRCm386149,309,475 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507083   ⟹   XP_006507146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,907 - 149,237,161 (+)NCBI
GRCm386149,309,409 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507084   ⟹   XP_006507147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,211,309 - 149,237,161 (+)NCBI
GRCm386149,309,811 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507086   ⟹   XP_006507149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,931 - 149,237,161 (+)NCBI
GRCm386149,309,475 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241622   ⟹   XP_011239924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,211,049 - 149,237,161 (+)NCBI
GRCm386149,309,551 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255554   ⟹   XP_030111414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,219,052 - 149,237,161 (+)NCBI
GRCm386149,317,551 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152270   ⟹   XP_036008163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,211,309 - 149,237,161 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001276590 (Get FASTA)   NCBI Sequence Viewer  
  NP_001276591 (Get FASTA)   NCBI Sequence Viewer  
  NP_080330 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507144 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507146 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507147 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507149 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239924 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111414 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008163 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH38922 (Get FASTA)   NCBI Sequence Viewer  
  AAH55761 (Get FASTA)   NCBI Sequence Viewer  
  AAH89381 (Get FASTA)   NCBI Sequence Viewer  
  AAI39436 (Get FASTA)   NCBI Sequence Viewer  
  AAI39437 (Get FASTA)   NCBI Sequence Viewer  
  BAB28838 (Get FASTA)   NCBI Sequence Viewer  
  BAB30717 (Get FASTA)   NCBI Sequence Viewer  
  BAC27553 (Get FASTA)   NCBI Sequence Viewer  
  BAC27639 (Get FASTA)   NCBI Sequence Viewer  
  BAD90453 (Get FASTA)   NCBI Sequence Viewer  
  EDL10766 (Get FASTA)   NCBI Sequence Viewer  
  EDL10767 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000041180
  ENSMUSP00000041180.7
  ENSMUSP00000098328
  ENSMUSP00000098328.5
  ENSMUSP00000115573.2
  ENSMUSP00000120770.2
  ENSMUSP00000139593.2
  ENSMUSP00000139624.2
  ENSMUSP00000139660
  ENSMUSP00000139660.2
  ENSMUSP00000140026
  ENSMUSP00000140026.2
  ENSMUSP00000140491.2
GenBank Protein Q5DTW7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_080330   ⟸   NM_026054
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507146   ⟸   XM_006507083
- Peptide Label: isoform X1
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507144   ⟸   XM_006507081
- Peptide Label: isoform X1
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507149   ⟸   XM_006507086
- Peptide Label: isoform X2
- UniProtKB: A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507147   ⟸   XM_006507084
- Peptide Label: isoform X1
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276590   ⟸   NM_001289661
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276591   ⟸   NM_001289662
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239924   ⟸   XM_011241622
- Peptide Label: isoform X1
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030111414   ⟸   XM_030255554
- Peptide Label: isoform X1
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000041180   ⟸   ENSMUST00000046689
Ensembl Acc Id: ENSMUSP00000115573   ⟸   ENSMUST00000130664
Ensembl Acc Id: ENSMUSP00000120770   ⟸   ENSMUST00000127680
Ensembl Acc Id: ENSMUSP00000139593   ⟸   ENSMUST00000185930
Ensembl Acc Id: ENSMUSP00000139624   ⟸   ENSMUST00000190785
Ensembl Acc Id: ENSMUSP00000140491   ⟸   ENSMUST00000187881
Ensembl Acc Id: ENSMUSP00000098328   ⟸   ENSMUST00000100765
Ensembl Acc Id: ENSMUSP00000139660   ⟸   ENSMUST00000189837
Ensembl Acc Id: ENSMUSP00000140026   ⟸   ENSMUST00000189932
RefSeq Acc Id: XP_036008163   ⟸   XM_036152270
- Peptide Label: isoform X1
- UniProtKB: Q9CSA5 (UniProtKB/Swiss-Prot),   Q8CCZ9 (UniProtKB/Swiss-Prot),   Q8CCW3 (UniProtKB/Swiss-Prot),   Q7TNT1 (UniProtKB/Swiss-Prot),   Q5FWH0 (UniProtKB/Swiss-Prot),   Q5DTW7 (UniProtKB/Swiss-Prot),   Q9CU82 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL),   A0A087WP74 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5DTW7-F1-model_v2 AlphaFold Q5DTW7 1-1521 view protein structure

Promoters
RGD ID:6839890
Promoter ID:MM_KWN:48343
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026054,   OTTMUST00000064710,   UC009EUB.1,   UC009EUC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366149,257,086 - 149,258,107 (+)MPROMDB
RGD ID:6838721
Promoter ID:MM_KWN:48346
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000100765
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366149,276,556 - 149,278,257 (+)MPROMDB
RGD ID:6891582
Promoter ID:EPDNEW_M9242
Type:initiation region
Name:2810474O19Rik_1
Description:Mus musculus RIKEN cDNA 2810474O19 gene , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386149,309,456 - 149,309,516EPDNEW
RGD ID:6891588
Promoter ID:EPDNEW_M9243
Type:initiation region
Name:2810474O19Rik_2
Description:Mus musculus RIKEN cDNA 2810474O19 gene , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9242  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386149,309,750 - 149,309,810EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914496 AgrOrtholog
Ensembl Genes ENSMUSG00000032712 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046689 ENTREZGENE
  ENSMUST00000046689.13 UniProtKB/Swiss-Prot
  ENSMUST00000100765 ENTREZGENE
  ENSMUST00000100765.11 UniProtKB/Swiss-Prot
  ENSMUST00000127680.2 UniProtKB/TrEMBL
  ENSMUST00000130664.8 UniProtKB/TrEMBL
  ENSMUST00000185930.2 UniProtKB/TrEMBL
  ENSMUST00000187881.2 UniProtKB/TrEMBL
  ENSMUST00000189837 ENTREZGENE
  ENSMUST00000189837.2 UniProtKB/TrEMBL
  ENSMUST00000189932 ENTREZGENE
  ENSMUST00000189932.7 UniProtKB/Swiss-Prot
  ENSMUST00000190785.7 UniProtKB/TrEMBL
InterPro RESF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67246 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914496 ENTREZGENE
NCBI Gene 67246 ENTREZGENE
PANTHER PTHR21604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RETROELEMENT SILENCING FACTOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4617 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Resf1 PhenoGen
UniProt A0A087WP47_MOUSE UniProtKB/TrEMBL
  A0A087WP74 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WR65_MOUSE UniProtKB/TrEMBL
  A0A140T8R9_MOUSE UniProtKB/TrEMBL
  A0A140T8W0_MOUSE UniProtKB/TrEMBL
  B2KFD0_MOUSE UniProtKB/TrEMBL
  B2KFD2 ENTREZGENE, UniProtKB/TrEMBL
  Q5DTW7 ENTREZGENE
  Q5FWH0 ENTREZGENE
  Q7TNT1 ENTREZGENE
  Q8CCW3 ENTREZGENE
  Q8CCZ9 ENTREZGENE
  Q8CFR7_MOUSE UniProtKB/TrEMBL
  Q9CSA5 ENTREZGENE
  Q9CU82 ENTREZGENE
  RESF1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5FWH0 UniProtKB/Swiss-Prot
  Q7TNT1 UniProtKB/Swiss-Prot
  Q8CCW3 UniProtKB/Swiss-Prot
  Q8CCZ9 UniProtKB/Swiss-Prot
  Q9CSA5 UniProtKB/Swiss-Prot
  Q9CU82 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-12 Resf1  retroelement silencing factor 1  2810474O19Rik  RIKEN cDNA 2810474O19 gene  Symbol and/or name change 5135510 APPROVED