Resf1 (retroelement silencing factor 1) - Rat Genome Database

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Gene: Resf1 (retroelement silencing factor 1) Mus musculus
Analyze
Symbol: Resf1
Name: retroelement silencing factor 1
RGD ID: 1320057
MGI Page MGI
Description: Enables histone methyltransferase binding activity. Involved in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate and positive regulation of DNA methylation-dependent heterochromatin assembly. Acts upstream of or within response to bacterium. Located in nucleus. Part of gamma-tubulin complex. Is expressed in genitourinary system; limb; and somite. Orthologous to human RESF1 (retroelement silencing factor 1); INTERACTS WITH crocidolite asbestos; hydrogen cyanide; potassium cyanide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2810474O19Rik; 6720435I21Rik; AA536804; AU020969; GET; hypothetical protein LOC67246; KIAA1551; likely orthologue of H. sapiens chromosome 12 open reading frame 35 (C12orf35); mKIAA1551; RIKEN cDNA 2810474O19 gene; RP23-214L4.1; uncharacterized protein C12orf35 homolog; uncharacterized protein KIAA1551
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,210,907 - 149,237,161 (+)NCBIGRCm39mm39
GRCm39 Ensembl6149,210,912 - 149,237,161 (+)Ensembl
GRCm386149,309,409 - 149,335,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,309,414 - 149,335,663 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,257,936 - 149,284,185 (+)NCBIGRCm37mm9NCBIm37
MGSCv366149,266,601 - 149,292,826 (+)NCBImm8
Celera6152,343,904 - 152,370,153 (+)NCBICelera
Cytogenetic Map6G3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
gamma-tubulin complex  (IMP)
nucleus  (IBA,IMP)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15741177  
PMID:15861396   PMID:16141072   PMID:16141073   PMID:17015433   PMID:17967808   PMID:18799693   PMID:20362541   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23012479   PMID:29728365  


Genomics

Comparative Map Data
Resf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,210,907 - 149,237,161 (+)NCBIGRCm39mm39
GRCm39 Ensembl6149,210,912 - 149,237,161 (+)Ensembl
GRCm386149,309,409 - 149,335,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,309,414 - 149,335,663 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,257,936 - 149,284,185 (+)NCBIGRCm37mm9NCBIm37
MGSCv366149,266,601 - 149,292,826 (+)NCBImm8
Celera6152,343,904 - 152,370,153 (+)NCBICelera
Cytogenetic Map6G3NCBI
RESF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1231,959,370 - 31,993,107 (+)EnsemblGRCh38hg38GRCh38
GRCh381231,959,415 - 31,993,107 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371232,112,349 - 32,146,041 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,003,620 - 32,037,308 (+)NCBINCBI36hg18NCBI36
Celera1211,934,148 - 11,967,834 (+)NCBI
Cytogenetic Map12p11.21NCBI
HuRef1231,863,530 - 31,897,223 (+)NCBIHuRef
CHM1_11232,078,356 - 32,112,040 (+)NCBICHM1_1
Resf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24182,325,913 - 182,362,054 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4182,335,454 - 182,362,054 (+)Ensembl
Rnor_6.04183,879,177 - 183,905,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,896,303 - 183,905,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,998,508 - 248,024,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,780,191 - 186,789,644 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14187,025,314 - 187,029,613 (+)NCBI
Celera4170,801,085 - 170,827,810 (+)NCBICelera
Cytogenetic Map4q44NCBI
Resf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555053,684,848 - 3,709,624 (-)NCBIChiLan1.0ChiLan1.0
RESF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11256,829,272 - 56,863,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1256,829,272 - 56,863,359 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01254,238,276 - 54,272,288 (-)NCBIMhudiblu_PPA_v0panPan3
RESF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12716,829,611 - 16,856,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2716,829,968 - 16,839,166 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,560,294 - 29,589,056 (+)NCBI
ROS_Cfam_1.02717,009,033 - 17,037,820 (-)NCBI
UMICH_Zoey_3.12716,819,667 - 16,848,433 (-)NCBI
UNSW_CanFamBas_1.02716,852,789 - 16,881,527 (-)NCBI
UU_Cfam_GSD_1.02729,714,347 - 29,743,126 (+)NCBI
Resf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,414,879 - 77,441,069 (-)NCBI
SpeTri2.0NW_0049366074,247,824 - 4,274,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RESF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl542,261,290 - 42,299,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1542,263,560 - 42,299,596 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2545,546,617 - 45,582,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RESF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,402,505 - 31,436,527 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,402,760 - 31,436,533 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660693,503,661 - 3,537,420 (-)NCBIVero_WHO_p1.0
Resf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247784,192,168 - 4,224,027 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
2810474O19Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv376149,276,773 - 149,277,569UniSTSGRCm37
Celera6152,362,741 - 152,363,537UniSTS
Cytogenetic Map6G3UniSTS
cM Map6 UniSTS
BE628502  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,326,413 - 149,326,533UniSTSGRCm38
MGSCv376149,274,935 - 149,275,055UniSTSGRCm37
Celera6152,360,903 - 152,361,023UniSTS
Cytogenetic Map6G3UniSTS
Whitehead/MRC_RH61501.08UniSTS
RH136339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,328,304 - 149,328,503UniSTSGRCm38
MGSCv376149,276,826 - 149,277,025UniSTSGRCm37
Celera6152,362,794 - 152,362,993UniSTS
Cytogenetic Map6G3UniSTS
RH124542  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,327,944 - 149,328,188UniSTSGRCm38
MGSCv376149,276,466 - 149,276,710UniSTSGRCm37
Celera6152,362,434 - 152,362,678UniSTS
Cytogenetic Map6G3UniSTS
UniSTS:235581  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,329,556 - 149,329,766UniSTSGRCm38
MGSCv376149,278,078 - 149,278,288UniSTSGRCm37
Celera6152,364,046 - 152,364,256UniSTS
Cytogenetic Map6G3UniSTS
BE105191  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,328,755 - 149,328,922UniSTSGRCm38
MGSCv376149,277,277 - 149,277,444UniSTSGRCm37
Celera6152,363,245 - 152,363,412UniSTS
Cytogenetic Map6G3UniSTS
2810474O19Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386149,328,251 - 149,329,047UniSTSGRCm38
MGSCv376149,276,773 - 149,277,569UniSTSGRCm37
Celera6152,362,741 - 152,363,537UniSTS
Cytogenetic Map6G3UniSTS
cM Map6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141194Cyx_mcycloheximide tasting (mouse)Not determined115569842149572401Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115569842149572401Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115569842149572401Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115601042149601187Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116852888149736546Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117082986149736546Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120439808149736546Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125323797149736546Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128235142149736546Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128655856149736546Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128655856149736546Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128655856149736546Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129428986149736546Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129428986149736546Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129428986149736546Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129633481149736546Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6130052456149736546Mouse
14746990Manh61_mmandible shape 61 (mouse)6130254857149736546Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130254857149736546Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:503
Count of miRNA genes:369
Interacting mature miRNAs:398
Transcripts:ENSMUST00000046689, ENSMUST00000100765, ENSMUST00000127680, ENSMUST00000130664, ENSMUST00000137983
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB639048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV644998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000046689   ⟹   ENSMUSP00000041180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,926 - 149,237,161 (+)Ensembl
GRCm38.p6 Ensembl6149,309,428 - 149,335,663 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100765   ⟹   ENSMUSP00000098328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,972 - 149,236,428 (+)Ensembl
GRCm38.p6 Ensembl6149,309,474 - 149,334,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127680   ⟹   ENSMUSP00000120770
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,218,832 - 149,227,465 (+)Ensembl
GRCm38.p6 Ensembl6149,317,334 - 149,325,967 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130664   ⟹   ENSMUSP00000115573
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,912 - 149,228,169 (+)Ensembl
GRCm38.p6 Ensembl6149,309,414 - 149,326,671 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137983
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,211,071 - 149,211,953 (+)Ensembl
GRCm38.p6 Ensembl6149,309,573 - 149,310,455 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185930   ⟹   ENSMUSP00000139593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,211,226 - 149,226,987 (+)Ensembl
GRCm38.p6 Ensembl6149,309,728 - 149,325,489 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187881   ⟹   ENSMUSP00000140491
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,226,154 - 149,227,271 (+)Ensembl
GRCm38.p6 Ensembl6149,324,656 - 149,325,773 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189837   ⟹   ENSMUSP00000139660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,226,956 - 149,237,156 (+)Ensembl
GRCm38.p6 Ensembl6149,325,458 - 149,335,658 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189932   ⟹   ENSMUSP00000140026
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,972 - 149,236,428 (+)Ensembl
GRCm38.p6 Ensembl6149,309,474 - 149,334,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190785   ⟹   ENSMUSP00000139624
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,210,954 - 149,230,475 (+)Ensembl
GRCm38.p6 Ensembl6149,309,456 - 149,328,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203348
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6149,212,914 - 149,215,864 (+)Ensembl
GRCm38.p6 Ensembl6149,311,416 - 149,314,366 (+)Ensembl
RefSeq Acc Id: NM_001289661   ⟹   NP_001276590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,912 - 149,237,161 (+)NCBI
GRCm386149,309,414 - 149,335,663 (+)NCBI
Celera6152,343,904 - 152,370,153 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289662   ⟹   NP_001276591
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,912 - 149,237,161 (+)NCBI
GRCm386149,309,414 - 149,335,663 (+)NCBI
Celera6152,343,904 - 152,370,153 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026054   ⟹   NP_080330
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,912 - 149,237,161 (+)NCBI
GRCm386149,309,414 - 149,335,663 (+)NCBI
MGSCv376149,257,936 - 149,284,185 (+)RGD
Celera6152,343,904 - 152,370,153 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507081   ⟹   XP_006507144
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,931 - 149,237,161 (+)NCBI
GRCm386149,309,475 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507083   ⟹   XP_006507146
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,907 - 149,237,161 (+)NCBI
GRCm386149,309,409 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507084   ⟹   XP_006507147
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,211,309 - 149,237,161 (+)NCBI
GRCm386149,309,811 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507086   ⟹   XP_006507149
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,210,931 - 149,237,161 (+)NCBI
GRCm386149,309,475 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241622   ⟹   XP_011239924
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,211,049 - 149,237,161 (+)NCBI
GRCm386149,309,551 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255554   ⟹   XP_030111414
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,219,052 - 149,237,161 (+)NCBI
GRCm386149,317,551 - 149,335,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152270   ⟹   XP_036008163
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396149,211,309 - 149,237,161 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_080330   ⟸   NM_026054
- UniProtKB: Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507146   ⟸   XM_006507083
- Peptide Label: isoform X1
- UniProtKB: Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507144   ⟸   XM_006507081
- Peptide Label: isoform X1
- UniProtKB: Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507149   ⟸   XM_006507086
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006507147   ⟸   XM_006507084
- Peptide Label: isoform X1
- UniProtKB: Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276590   ⟸   NM_001289661
- UniProtKB: Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276591   ⟸   NM_001289662
- UniProtKB: Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239924   ⟸   XM_011241622
- Peptide Label: isoform X1
- UniProtKB: Q5DTW7 (UniProtKB/Swiss-Prot),   B2KFD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030111414   ⟸   XM_030255554
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000041180   ⟸   ENSMUST00000046689
RefSeq Acc Id: ENSMUSP00000115573   ⟸   ENSMUST00000130664
RefSeq Acc Id: ENSMUSP00000120770   ⟸   ENSMUST00000127680
RefSeq Acc Id: ENSMUSP00000139593   ⟸   ENSMUST00000185930
RefSeq Acc Id: ENSMUSP00000139624   ⟸   ENSMUST00000190785
RefSeq Acc Id: ENSMUSP00000140491   ⟸   ENSMUST00000187881
RefSeq Acc Id: ENSMUSP00000098328   ⟸   ENSMUST00000100765
RefSeq Acc Id: ENSMUSP00000139660   ⟸   ENSMUST00000189837
RefSeq Acc Id: ENSMUSP00000140026   ⟸   ENSMUST00000189932
RefSeq Acc Id: XP_036008163   ⟸   XM_036152270
- Peptide Label: isoform X1

Promoters
RGD ID:6839890
Promoter ID:MM_KWN:48343
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026054,   OTTMUST00000064710,   UC009EUB.1,   UC009EUC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366149,257,086 - 149,258,107 (+)MPROMDB
RGD ID:6838721
Promoter ID:MM_KWN:48346
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000100765
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366149,276,556 - 149,278,257 (+)MPROMDB
RGD ID:6891582
Promoter ID:EPDNEW_M9242
Type:initiation region
Name:2810474O19Rik_1
Description:Mus musculus RIKEN cDNA 2810474O19 gene , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386149,309,456 - 149,309,516EPDNEW
RGD ID:6891588
Promoter ID:EPDNEW_M9243
Type:initiation region
Name:2810474O19Rik_2
Description:Mus musculus RIKEN cDNA 2810474O19 gene , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9242  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386149,309,750 - 149,309,810EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914496 AgrOrtholog
Ensembl Genes ENSMUSG00000032712 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000041180 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000098328 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115573 UniProtKB/TrEMBL
  ENSMUSP00000120770 UniProtKB/TrEMBL
  ENSMUSP00000139593 UniProtKB/TrEMBL
  ENSMUSP00000139624 UniProtKB/TrEMBL
  ENSMUSP00000139660 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000140026 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140491 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046689 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000100765 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000127680 UniProtKB/TrEMBL
  ENSMUST00000130664 UniProtKB/TrEMBL
  ENSMUST00000185930 UniProtKB/TrEMBL
  ENSMUST00000187881 UniProtKB/TrEMBL
  ENSMUST00000189837 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000189932 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000190785 UniProtKB/TrEMBL
InterPro RESF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67246 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914496 ENTREZGENE
NCBI Gene 67246 ENTREZGENE
PANTHER PTHR21604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4617 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Resf1 PhenoGen
UniProt A0A087WP47_MOUSE UniProtKB/TrEMBL
  A0A087WP74_MOUSE UniProtKB/TrEMBL
  A0A087WR65_MOUSE UniProtKB/TrEMBL
  A0A140T8R9_MOUSE UniProtKB/TrEMBL
  A0A140T8W0_MOUSE UniProtKB/TrEMBL
  B2KFD0_MOUSE UniProtKB/TrEMBL
  B2KFD2 ENTREZGENE, UniProtKB/TrEMBL
  Q5DTW7 ENTREZGENE
  Q8CFR7_MOUSE UniProtKB/TrEMBL
  RESF1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5FWH0 UniProtKB/Swiss-Prot
  Q7TNT1 UniProtKB/Swiss-Prot
  Q8CCW3 UniProtKB/Swiss-Prot
  Q8CCZ9 UniProtKB/Swiss-Prot
  Q9CSA5 UniProtKB/Swiss-Prot
  Q9CU82 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-12 Resf1  retroelement silencing factor 1  2810474O19Rik  RIKEN cDNA 2810474O19 gene  Symbol and/or name change 5135510 APPROVED