Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | urinary bladder cancer | | ISO | ANKFY1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:26039340 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | urinary bladder cancer | | ISO | ANKFY1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:26039340 | |
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# | Reference Title | Reference Citation |
1. | Mouse brain organization revealed through direct genome-scale TF expression analysis. | Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7. |
2. | Functional annotation of a full-length mouse cDNA collection. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
3. | MGDs mouse GO annotations | MGD data from the GO Consortium |
4. | Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. | Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48. |
5. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
6. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10092534 | PMID:10349636 | PMID:10922068 | PMID:10940552 | PMID:11042159 | PMID:11076861 | PMID:11423996 | PMID:12466305 | PMID:12477932 | PMID:12520002 | PMID:12833855 | PMID:15226823 |
PMID:15328530 | PMID:16141072 | PMID:16141073 | PMID:16602821 | PMID:16778019 | PMID:18287559 | PMID:18799693 | PMID:20412781 | PMID:21267068 | PMID:21873635 | PMID:22988430 | PMID:24194600 |
PMID:24457600 | PMID:26496610 | PMID:28123425 | PMID:28378742 | PMID:28588446 | PMID:28671696 | PMID:30550785 | PMID:32325033 | PMID:32888949 | PMID:33796010 | PMID:38187761 |
Ankfy1 (Mus musculus - house mouse) |
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ANKFY1 (Homo sapiens - human) |
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Ankfy1 (Rattus norvegicus - Norway rat) |
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Ankfy1 (Chinchilla lanigera - long-tailed chinchilla) |
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ANKFY1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ANKFY1 (Canis lupus familiaris - dog) |
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Ankfy1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ANKFY1 (Sus scrofa - pig) |
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ANKFY1 (Chlorocebus sabaeus - green monkey) |
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Ankfy1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Ankfy1
1603 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AB011370 |
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D9Mit34.1 |
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RefSeq Transcripts | NM_009671 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_030245484 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036156245 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB011370 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AB098157 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AB098329 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK014592 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK122479 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK134008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL663082 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL808023 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC004609 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC139231 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC145583 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BQ550282 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466596 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CV557421 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DQ716509 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000102548 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000127610 ⟹ ENSMUSP00000118252 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000132889 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000147195 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000150172 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000155998 ⟹ ENSMUSP00000118751 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_009671 ⟹ NP_033801 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030245484 ⟹ XP_030101344 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036156245 ⟹ XP_036012138 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_033801 | (Get FASTA) | NCBI Sequence Viewer |
XP_030101344 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036012138 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI39232 | (Get FASTA) | NCBI Sequence Viewer |
AAI45584 | (Get FASTA) | NCBI Sequence Viewer | |
BAA24980 | (Get FASTA) | NCBI Sequence Viewer | |
BAC65761 | (Get FASTA) | NCBI Sequence Viewer | |
BAC67211 | (Get FASTA) | NCBI Sequence Viewer | |
BAC67388 | (Get FASTA) | NCBI Sequence Viewer | |
BAC67389 | (Get FASTA) | NCBI Sequence Viewer | |
EDL12694 | (Get FASTA) | NCBI Sequence Viewer | |
EDL12695 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000118252.2 | ||
ENSMUSP00000118751 | |||
ENSMUSP00000118751.2 | |||
GenBank Protein | Q810B6 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_033801 ⟸ NM_009671 |
- UniProtKB: | Q80TG6 (UniProtKB/Swiss-Prot), O54807 (UniProtKB/Swiss-Prot), B1ATS3 (UniProtKB/Swiss-Prot), Q80UH8 (UniProtKB/Swiss-Prot), Q810B6 (UniProtKB/Swiss-Prot), B7ZP20 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_030101344 ⟸ XM_030245484 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | ENSMUSP00000118252 ⟸ ENSMUST00000127610 |
RefSeq Acc Id: | ENSMUSP00000118751 ⟸ ENSMUST00000155998 |
RefSeq Acc Id: | XP_036012138 ⟸ XM_036156245 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B7ZP20 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q810B6-F1-model_v2 | AlphaFold | Q810B6 | 1-1169 | view protein structure |
RGD ID: | 6820397 | ||||||||
Promoter ID: | MM_KWN:8335 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | NM_009671, OTTMUST00000013820, UC007JZG.1 | ||||||||
Position: |
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RGD ID: | 6820378 | ||||||||
Promoter ID: | MM_KWN:8338 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour | ||||||||
Transcripts: | OTTMUST00000013822 | ||||||||
Position: |
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RGD ID: | 8675450 | ||||||||
Promoter ID: | EPDNEW_M15756 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Ankfy1_1 | ||||||||
Description: | Mus musculus ankyrin repeat and FYVE domain containing 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M15757 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8675454 | ||||||||
Promoter ID: | EPDNEW_M15757 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Ankfy1_2 | ||||||||
Description: | Mus musculus ankyrin repeat and FYVE domain containing 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M15756 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1337008 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000020790 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Transcript | ENSMUST00000127610.8 | UniProtKB/Swiss-Prot |
ENSMUST00000155998 | ENTREZGENE | |
ENSMUST00000155998.2 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 1.25.40.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.30.40.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | Ankyrin_rpt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ankyrin_rpt-contain_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
BTB/POZ_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SKP1/BTB/POZ_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_FYVE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_FYVE-rel | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_FYVE_PHD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_RING/FYVE/PHD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:11736 | UniProtKB/Swiss-Prot |
MGD | MGI:1337008 | ENTREZGENE |
NCBI Gene | 11736 | ENTREZGENE |
PANTHER | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN | UniProtKB/TrEMBL |
ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN | UniProtKB/TrEMBL | |
POTE ANKYRIN DOMAIN | UniProtKB/Swiss-Prot | |
RABANKYRIN-5 | UniProtKB/Swiss-Prot | |
Pfam | Ank | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ank_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
BTB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FYVE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Ankfy1 | PhenoGen |
PRINTS | ANKYRIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | ANK_REP_REGION | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ANK_REPEAT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
BTB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_FYVE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | ANK | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
BTB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FYVE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF48403 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF54695 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF57903 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | ANFY1_MOUSE | UniProtKB/Swiss-Prot |
B1ATS3 | ENTREZGENE | |
B7ZP20 | ENTREZGENE, UniProtKB/TrEMBL | |
O54807 | ENTREZGENE | |
Q80TG6 | ENTREZGENE | |
Q80UH8 | ENTREZGENE | |
Q810B6 | ENTREZGENE | |
UniProt Secondary | B1ATS3 | UniProtKB/Swiss-Prot |
O54807 | UniProtKB/Swiss-Prot | |
Q80TG6 | UniProtKB/Swiss-Prot | |
Q80UH8 | UniProtKB/Swiss-Prot |