Rnf145 (ring finger protein 145) - Rat Genome Database

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Gene: Rnf145 (ring finger protein 145) Mus musculus
Analyze
Symbol: Rnf145
Name: ring finger protein 145
RGD ID: 1319969
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endomembrane system. Is expressed in central nervous system; early conceptus; and genitourinary system. Orthologous to human RNF145 (ring finger protein 145).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3732413I11Rik; RP23-103H9.1; TMRF1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391144,409,486 - 44,456,347 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1144,409,791 - 44,456,347 (+)EnsemblGRCm39 Ensembl
GRCm381144,518,793 - 44,565,520 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1144,518,964 - 44,565,520 (+)EnsemblGRCm38mm10GRCm38
MGSCv371144,332,466 - 44,379,022 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361144,362,387 - 44,408,939 (+)NCBIMGSCv36mm8
Celera1149,155,223 - 49,201,758 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
1-benzylpiperazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
clobetasol  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
diclofenac  (EXP)
dioxygen  (EXP,ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gentamycin  (ISO)
Heptachlor epoxide  (EXP)
indometacin  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methyl methanesulfonate  (ISO)
nicotine  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
rotenone  (ISO)
silicon dioxide  (ISO)
sinapic acid  (EXP)
sodium arsenite  (ISO)
tamoxifen  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
trichloroethene  (EXP,ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16964442   PMID:18287559   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22988430   PMID:23375831   PMID:26194095   PMID:28231341   PMID:29068315   PMID:30543180  


Genomics

Comparative Map Data
Rnf145
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391144,409,486 - 44,456,347 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1144,409,791 - 44,456,347 (+)EnsemblGRCm39 Ensembl
GRCm381144,518,793 - 44,565,520 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1144,518,964 - 44,565,520 (+)EnsemblGRCm38mm10GRCm38
MGSCv371144,332,466 - 44,379,022 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361144,362,387 - 44,408,939 (+)NCBIMGSCv36mm8
Celera1149,155,223 - 49,201,758 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.94NCBI
RNF145
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385159,157,409 - 159,210,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5159,157,409 - 159,210,053 (-)EnsemblGRCh38hg38GRCh38
GRCh375158,584,417 - 158,637,061 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365158,516,997 - 158,567,412 (-)NCBINCBI36Build 36hg18NCBI36
Celera5154,615,596 - 154,665,655 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5153,679,240 - 153,731,516 (-)NCBIHuRef
CHM1_15158,016,940 - 158,069,491 (-)NCBICHM1_1
T2T-CHM13v2.05159,686,225 - 159,738,515 (-)NCBIT2T-CHM13v2.0
Rnf145
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81029,507,779 - 29,552,153 (+)NCBIGRCr8
mRatBN7.21029,006,391 - 29,050,788 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1029,011,548 - 29,050,781 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1033,750,697 - 33,794,998 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0102,289,100 - 2,333,404 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01028,721,312 - 28,765,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01030,169,147 - 30,207,505 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1030,169,257 - 30,207,498 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,997,155 - 30,040,963 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41029,680,833 - 29,720,064 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11029,675,555 - 29,721,112 (+)NCBI
Celera1028,490,494 - 28,530,243 (+)NCBICelera
Cytogenetic Map10q21NCBI
Rnf145
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540813,169,276 - 13,215,815 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540813,169,276 - 13,207,424 (-)NCBIChiLan1.0ChiLan1.0
RNF145
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24154,344,347 - 154,396,326 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15152,483,895 - 152,535,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05154,549,850 - 154,601,612 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15161,166,430 - 161,211,996 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5161,162,398 - 161,218,603 (-)Ensemblpanpan1.1panPan2
RNF145
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1451,280,393 - 51,337,798 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl451,286,421 - 51,517,422 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha451,173,483 - 51,230,217 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0451,715,778 - 51,772,512 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl451,715,244 - 51,773,444 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1451,544,820 - 51,601,486 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0451,650,164 - 51,707,040 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0452,167,126 - 52,224,031 (+)NCBIUU_Cfam_GSD_1.0
Rnf145
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213105,734,099 - 105,772,788 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365154,183,014 - 4,224,591 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365154,183,554 - 4,222,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF145
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1664,252,227 - 64,314,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11664,251,772 - 64,314,113 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21670,057,562 - 70,115,922 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF145
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12361,556,899 - 61,608,406 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2361,556,548 - 61,608,214 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603416,016,410 - 16,067,801 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf145
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473330,245,689 - 30,290,684 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473330,239,475 - 30,288,171 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf145
2095 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1847
Count of miRNA genes:827
Interacting mature miRNAs:1124
Transcripts:ENSMUST00000019333, ENSMUST00000101327, ENSMUST00000124959, ENSMUST00000127907, ENSMUST00000129676, ENSMUST00000150257
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse

Markers in Region
Rnf145  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,564,232 - 44,564,730UniSTSGRCm38
MGSCv371144,377,734 - 44,378,232UniSTSGRCm37
Celera1149,200,470 - 49,200,968UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map11 UniSTS
MHAa78b11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,547,263 - 44,547,420UniSTSGRCm38
MGSCv371144,360,765 - 44,360,922UniSTSGRCm37
Celera1149,183,521 - 49,183,678UniSTS
Cytogenetic Map11B1.1UniSTS
Whitehead_YAC11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB618481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK624836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000019333   ⟹   ENSMUSP00000019333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,409,791 - 44,456,347 (+)Ensembl
GRCm38.p6 Ensembl1144,518,964 - 44,565,520 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101327   ⟹   ENSMUSP00000098881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,410,269 - 44,445,804 (+)Ensembl
GRCm38.p6 Ensembl1144,519,442 - 44,554,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,411,132 - 44,439,752 (+)Ensembl
GRCm38.p6 Ensembl1144,520,305 - 44,548,925 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,409,810 - 44,415,185 (+)Ensembl
GRCm38.p6 Ensembl1144,518,983 - 44,524,358 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,450,846 - 44,452,804 (+)Ensembl
GRCm38.p6 Ensembl1144,560,019 - 44,561,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,447,658 - 44,450,864 (+)Ensembl
GRCm38.p6 Ensembl1144,556,831 - 44,560,037 (+)Ensembl
RefSeq Acc Id: NM_001166553   ⟹   NP_001160025
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,410,204 - 44,445,804 (+)NCBI
GRCm381144,519,377 - 44,554,977 (+)NCBI
MGSCv371144,332,466 - 44,379,022 (+)RGD
Celera1149,155,223 - 49,201,758 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001363166   ⟹   NP_001350095
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,411,116 - 44,456,347 (+)NCBI
GRCm381144,520,289 - 44,565,520 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028862   ⟹   NP_083138
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,409,783 - 44,456,347 (+)NCBI
GRCm381144,518,956 - 44,565,520 (+)NCBI
MGSCv371144,332,466 - 44,379,022 (+)RGD
Celera1149,155,223 - 49,201,758 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534357   ⟹   XP_006534420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,409,770 - 44,456,347 (+)NCBI
GRCm381144,518,961 - 44,565,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534358   ⟹   XP_006534421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,409,486 - 44,456,347 (+)NCBI
GRCm381144,518,793 - 44,565,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246392   ⟹   XP_030102252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,409,783 - 44,456,347 (+)NCBI
GRCm381144,518,956 - 44,565,520 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083138   ⟸   NM_028862
- Peptide Label: isoform 1
- UniProtKB: Q8BXX5 (UniProtKB/Swiss-Prot),   Q9CXG1 (UniProtKB/Swiss-Prot),   Q5SWK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001160025   ⟸   NM_001166553
- Peptide Label: isoform 2
- UniProtKB: Q8BU61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534421   ⟸   XM_006534358
- Peptide Label: isoform X1
- UniProtKB: Q8BXX5 (UniProtKB/Swiss-Prot),   Q9CXG1 (UniProtKB/Swiss-Prot),   Q5SWK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534420   ⟸   XM_006534357
- Peptide Label: isoform X1
- UniProtKB: Q8BXX5 (UniProtKB/Swiss-Prot),   Q9CXG1 (UniProtKB/Swiss-Prot),   Q5SWK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102252   ⟸   XM_030246392
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001350095   ⟸   NM_001363166
- Peptide Label: isoform 1
- UniProtKB: Q8BXX5 (UniProtKB/Swiss-Prot),   Q5SWK7 (UniProtKB/Swiss-Prot),   Q9CXG1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000098881   ⟸   ENSMUST00000101327
RefSeq Acc Id: ENSMUSP00000019333   ⟸   ENSMUST00000019333
Protein Domains
RING-type   TRC8-like N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SWK7-F1-model_v2 AlphaFold Q5SWK7 1-663 view protein structure

Promoters
RGD ID:6821743
Promoter ID:MM_KWN:7055
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:NM_001166553,   OTTMUST00000012180,   OTTMUST00000012184
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361144,332,209 - 44,332,709 (+)MPROMDB
RGD ID:6821740
Promoter ID:MM_KWN:7056
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000012181
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361144,333,536 - 44,334,147 (+)MPROMDB
RGD ID:6821741
Promoter ID:MM_KWN:7057
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:OTTMUST00000012182
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361144,369,591 - 44,370,857 (+)MPROMDB
RGD ID:6821742
Promoter ID:MM_KWN:7058
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Liver,   Lung
Transcripts:OTTMUST00000012183
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361144,373,136 - 44,373,852 (+)MPROMDB
RGD ID:8674362
Promoter ID:EPDNEW_M15212
Type:multiple initiation site
Name:Rnf145_1
Description:Mus musculus ring finger protein 145 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15213  EPDNEW_M15214  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381144,518,976 - 44,519,036EPDNEW
RGD ID:8674364
Promoter ID:EPDNEW_M15213
Type:initiation region
Name:Rnf145_2
Description:Mus musculus ring finger protein 145 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15212  EPDNEW_M15214  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381144,519,442 - 44,519,502EPDNEW
RGD ID:8674366
Promoter ID:EPDNEW_M15214
Type:initiation region
Name:Rnf145_3
Description:Mus musculus ring finger protein 145 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15212  EPDNEW_M15213  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381144,520,423 - 44,520,483EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921565 AgrOrtholog
Ensembl Genes ENSMUSG00000019189 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019333 ENTREZGENE
  ENSMUST00000019333.10 UniProtKB/Swiss-Prot
  ENSMUST00000101327 ENTREZGENE
  ENSMUST00000101327.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RNF145_RING-H2 UniProtKB/Swiss-Prot
  TRC8_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING-CH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74315 UniProtKB/Swiss-Prot
MGD MGI:1921565 ENTREZGENE
NCBI Gene 74315 ENTREZGENE
PANTHER RING FINGER PROTEIN 145 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TRC8_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf145 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RINGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3UTM8_MOUSE UniProtKB/TrEMBL
  Q5SWK7 ENTREZGENE
  Q7TMH4_MOUSE UniProtKB/TrEMBL
  Q80V78_MOUSE UniProtKB/TrEMBL
  Q8BU61 ENTREZGENE, UniProtKB/TrEMBL
  Q8BXX5 ENTREZGENE
  Q9CXG1 ENTREZGENE
  RN145_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BXX5 UniProtKB/Swiss-Prot
  Q9CXG1 UniProtKB/Swiss-Prot