Myl12a (myosin, light chain 12A, regulatory, non-sarcomeric) - Rat Genome Database

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Gene: Myl12a (myosin, light chain 12A, regulatory, non-sarcomeric) Mus musculus
Analyze
Symbol: Myl12a
Name: myosin, light chain 12A, regulatory, non-sarcomeric
RGD ID: 1319927
MGI Page MGI
Description: Enables glutamate receptor binding activity. Acts upstream of or within protein localization to plasma membrane and regulation of cell shape. Located in Z disc and stress fiber. Part of myosin II complex. Orthologous to human MYL12A (myosin light chain 12A) and MYL12B (myosin light chain 12B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900073G15Rik; AI838292; brain specific myosin regulatory light chain; C80200; myosin light chain, regulatory B-like; NMDA receptor-interacting protein
RGD Orthologs
Human
Rat
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,300,788 - 71,309,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,300,651 - 71,309,873 (-)EnsemblGRCm39 Ensembl
GRCm381770,993,793 - 71,002,533 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1770,993,656 - 71,002,878 (-)EnsemblGRCm38mm10GRCm38
MGSCv371771,343,133 - 71,351,873 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361770,898,650 - 70,907,390 (-)NCBIMGSCv36mm8
Celera1775,264,345 - 75,272,999 (-)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1741.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bortezomib  (ISO)
bucladesine  (ISO)
cadmium atom  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
carvedilol  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (EXP,ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
fenamidone  (EXP)
folic acid  (EXP)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
inulin  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
medroxyprogesterone acetate  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
miconazole  (EXP)
nickel atom  (ISO)
ouabain  (ISO)
ozone  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
quercetin  (ISO)
sodium dodecyl sulfate  (ISO)
sulfadimethoxine  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
torcetrapib  (ISO)
triptonide  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10862698   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11752298   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15663482  
PMID:16141072   PMID:16141073   PMID:16919269   PMID:16959763   PMID:17967808   PMID:18799693   PMID:18945678   PMID:21126233   PMID:22909821   PMID:24960163   PMID:26496610   PMID:30409884  
PMID:32142630   PMID:33424621   PMID:34255394   PMID:36114006   PMID:36871220  


Genomics

Comparative Map Data
Myl12a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,300,788 - 71,309,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,300,651 - 71,309,873 (-)EnsemblGRCm39 Ensembl
GRCm381770,993,793 - 71,002,533 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1770,993,656 - 71,002,878 (-)EnsemblGRCm38mm10GRCm38
MGSCv371771,343,133 - 71,351,873 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361770,898,650 - 70,907,390 (-)NCBIMGSCv36mm8
Celera1775,264,345 - 75,272,999 (-)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1741.87NCBI
MYL12A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38183,247,482 - 3,256,237 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl183,247,481 - 3,256,236 (+)EnsemblGRCh38hg38GRCh38
GRCh37183,247,480 - 3,256,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36183,237,528 - 3,246,234 (+)NCBINCBI36Build 36hg18NCBI36
Celera183,127,027 - 3,135,734 (+)NCBICelera
Cytogenetic Map18p11.31NCBI
HuRef183,211,956 - 3,220,663 (+)NCBIHuRef
CHM1_1183,246,912 - 3,255,619 (+)NCBICHM1_1
T2T-CHM13v2.0183,406,847 - 3,415,603 (+)NCBIT2T-CHM13v2.0
Myl12a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89118,338,592 - 118,346,277 (-)NCBIGRCr8
mRatBN7.29110,891,970 - 110,899,655 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9110,873,959 - 110,916,580 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9119,279,486 - 119,287,173 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09124,409,074 - 124,416,761 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09122,745,452 - 122,753,139 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09119,325,282 - 119,333,012 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,325,283 - 119,332,967 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,779,616 - 118,787,326 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,190,030 - 110,197,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19110,399,541 - 110,420,043 (-)NCBI
Celera9108,022,176 - 108,029,861 (-)NCBICelera
Cytogenetic Map9q38NCBI
LOC607207
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1769,860,472 - 69,871,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha769,315,790 - 69,327,268 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0769,922,008 - 69,933,098 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl769,922,161 - 69,933,464 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1769,605,059 - 69,616,537 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0769,624,348 - 69,635,519 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0769,922,982 - 69,934,156 (+)NCBIUU_Cfam_GSD_1.0
LOC103222703
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11862,496,372 - 62,504,835 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1862,501,879 - 62,505,937 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605037,359,600 - 37,390,329 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Myl12a
379 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:986
Count of miRNA genes:581
Interacting mature miRNAs:670
Transcripts:ENSMUST00000024846, ENSMUST00000123686, ENSMUST00000126529, ENSMUST00000128179, ENSMUST00000129093, ENSMUST00000148960, ENSMUST00000150456
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4142201Obrq15_mobesity resistance QTL 15 (mouse)Not determined5753444780885776Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
13464254Ifvrq3_minfluenza virus resistance QTL 3 (mouse)176795765583908089Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
11565819Ppipq1_mprepulse inhibition percentage QTL 1 (mouse)177105765575377655Mouse

Markers in Region
RH126825  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381770,994,404 - 70,994,630UniSTSGRCm38
MGSCv371771,343,744 - 71,343,970UniSTSGRCm37
Celera1775,264,958 - 75,265,184UniSTS
Cytogenetic Map17E1.3UniSTS
Whitehead/MRC_RH17833.22UniSTS
AI838292  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381770,993,969 - 70,994,049UniSTSGRCm38
MGSCv371771,343,309 - 71,343,389UniSTSGRCm37
Celera1775,264,523 - 75,264,603UniSTS
Cytogenetic Map17E1.3UniSTS
Whitehead/MRC_RH17832.91UniSTS
UniSTS:237692  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381770,993,798 - 70,994,037UniSTSGRCm38
MGSCv371771,343,138 - 71,343,377UniSTSGRCm37
Celera1775,264,350 - 75,264,591UniSTS
Cytogenetic Map17E1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI838292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF661452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY258797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY319676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01075437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV063953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000024846   ⟹   ENSMUSP00000024846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,301,289 - 71,305,007 (-)Ensembl
GRCm38.p6 Ensembl1770,994,294 - 70,998,012 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123686   ⟹   ENSMUSP00000116398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,301,544 - 71,309,873 (-)Ensembl
GRCm38.p6 Ensembl1770,994,549 - 71,002,878 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,301,289 - 71,309,160 (-)Ensembl
GRCm38.p6 Ensembl1770,994,294 - 71,002,165 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128179   ⟹   ENSMUSP00000119491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,303,701 - 71,309,012 (-)Ensembl
GRCm38.p6 Ensembl1770,996,706 - 71,002,017 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,303,380 - 71,309,155 (-)Ensembl
GRCm38.p6 Ensembl1770,996,385 - 71,002,160 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148960   ⟹   ENSMUSP00000123412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,300,651 - 71,309,549 (-)Ensembl
GRCm38.p6 Ensembl1770,993,656 - 71,002,554 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150456   ⟹   ENSMUSP00000114712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,303,129 - 71,309,182 (-)Ensembl
GRCm38.p6 Ensembl1770,996,134 - 71,002,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232766   ⟹   ENSMUSP00000156508
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,301,282 - 71,305,049 (-)Ensembl
GRCm38.p6 Ensembl1770,994,287 - 70,998,054 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233089   ⟹   ENSMUSP00000156522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,301,282 - 71,304,302 (-)Ensembl
GRCm38.p6 Ensembl1770,994,287 - 70,997,307 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233798   ⟹   ENSMUSP00000156693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1771,301,282 - 71,305,558 (-)Ensembl
GRCm38.p6 Ensembl1770,994,287 - 70,998,563 (-)Ensembl
RefSeq Acc Id: NM_001357820   ⟹   NP_001344749
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,300,792 - 71,305,007 (-)NCBI
GRCm381770,993,797 - 70,998,012 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026064   ⟹   NP_080340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391771,300,788 - 71,309,528 (-)NCBI
GRCm381770,993,793 - 71,002,533 (-)ENTREZGENE
MGSCv371771,343,133 - 71,351,873 (-)RGD
Celera1775,264,345 - 75,272,999 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080340   ⟸   NM_026064
- Peptide Label: isoform 1
- UniProtKB: Q6ZWQ9 (UniProtKB/TrEMBL),   Q9D6E6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344749   ⟸   NM_001357820
- Peptide Label: isoform 2
- UniProtKB: Q9D6E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000114712   ⟸   ENSMUST00000150456
RefSeq Acc Id: ENSMUSP00000156693   ⟸   ENSMUST00000233798
RefSeq Acc Id: ENSMUSP00000156522   ⟸   ENSMUST00000233089
RefSeq Acc Id: ENSMUSP00000123412   ⟸   ENSMUST00000148960
RefSeq Acc Id: ENSMUSP00000156508   ⟸   ENSMUST00000232766
RefSeq Acc Id: ENSMUSP00000119491   ⟸   ENSMUST00000128179
RefSeq Acc Id: ENSMUSP00000116398   ⟸   ENSMUST00000123686
RefSeq Acc Id: ENSMUSP00000024846   ⟸   ENSMUST00000024846
Protein Domains
EF-hand

Promoters
RGD ID:13676706
Promoter ID:EPDNEW_M22502
Type:initiation region
Name:Myl12a_1
Description:Mus musculus myosin, light chain 12A, regulatory, non-sarcomeric, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22503  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381771,002,179 - 71,002,239EPDNEW
RGD ID:13676708
Promoter ID:EPDNEW_M22503
Type:initiation region
Name:Myl12a_2
Description:Mus musculus myosin, light chain 12A, regulatory, non-sarcomeric, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22502  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381771,002,521 - 71,002,581EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914518 AgrOrtholog
Ensembl Genes ENSMUSG00000024048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000117098 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024846.13 UniProtKB/TrEMBL
  ENSMUST00000123686.8 UniProtKB/TrEMBL
  ENSMUST00000128179.2 UniProtKB/TrEMBL
  ENSMUST00000148960 ENTREZGENE
  ENSMUST00000148960.8 UniProtKB/TrEMBL
  ENSMUST00000150456.2 UniProtKB/TrEMBL
  ENSMUST00000232766.2 UniProtKB/TrEMBL
  ENSMUST00000233089.2 UniProtKB/TrEMBL
  ENSMUST00000233417.2 UniProtKB/TrEMBL
  ENSMUST00000233798.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-like_dom UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_Ca-bd UniProtKB/TrEMBL
MGD MGI:1914518 ENTREZGENE
NCBI Gene 67268 ENTREZGENE
PANTHER MYOSIN REGULATORY LIGHT CHAIN 12A UniProtKB/TrEMBL
  MYOSIN REGULATORY LIGHT CHAIN 12B UniProtKB/TrEMBL
  MYOSIN REGULATORY LIGHT CHAIN 2 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  EF_hand_4 UniProtKB/TrEMBL
PhenoGen Myl12a PhenoGen
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt D3YV37_MOUSE UniProtKB/TrEMBL
  D3Z249_MOUSE UniProtKB/TrEMBL
  Q6ZWQ9 ENTREZGENE, UniProtKB/TrEMBL
  Q9D6E6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-10-18 Myl12a  myosin, light chain 12A, regulatory, non-sarcomeric  2900073G15Rik  RIKEN cDNA 2900073G15 gene  Symbol and/or name change 5135510 APPROVED