Wdpcp (WD repeat containing planar cell polarity effector) - Rat Genome Database

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Gene: Wdpcp (WD repeat containing planar cell polarity effector) Mus musculus
Analyze
Symbol: Wdpcp
Name: WD repeat containing planar cell polarity effector
RGD ID: 1319875
MGI Page MGI
Description: Acts upstream of or within several processes, including embryonic digit morphogenesis; podocyte cell migration; and sensory organ morphogenesis. Located in axonemal basal plate. Is expressed in several structures, including alimentary system epithelium; brain; musculoskeletal system; nose; and respiratory system. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 15 and congenital heart defects, hamartomas of tongue, and polysyndactyly. Orthologous to human WDPCP (WD repeat containing planar cell polarity effector).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AV2491; AV249152; Frtz; homolo; homoloc-13; homolog-13; mFrtz; RP23-202E24.1; WD repeat-containing and planar cell polarity effector protein; WD repeat-containing and planar cell polarity effector protein fritz homolog; WD repeat-containing protein C2orf86 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,521,969 - 21,848,686 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,522,235 - 21,848,989 (+)EnsemblGRCm39 Ensembl
GRCm381121,571,969 - 21,898,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,572,235 - 21,898,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,472,284 - 21,798,689 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,472,284 - 21,798,689 (+)NCBIMGSCv36mm8
Celera1123,720,548 - 24,045,720 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12174196   PMID:12466851   PMID:12477932   PMID:15548583   PMID:16141072   PMID:16141073   PMID:16244655   PMID:21267068  
PMID:21873635   PMID:24302887   PMID:27158779   PMID:29487191   PMID:34225660   PMID:34518561  


Genomics

Comparative Map Data
Wdpcp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,521,969 - 21,848,686 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,522,235 - 21,848,989 (+)EnsemblGRCm39 Ensembl
GRCm381121,571,969 - 21,898,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,572,235 - 21,898,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,472,284 - 21,798,689 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,472,284 - 21,798,689 (+)NCBIMGSCv36mm8
Celera1123,720,548 - 24,045,720 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.9NCBI
WDPCP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38263,119,559 - 63,840,826 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl263,119,559 - 63,827,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37263,346,694 - 63,815,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36263,202,022 - 63,669,355 (-)NCBINCBI36Build 36hg18NCBI36
Celera263,193,063 - 63,660,892 (-)NCBICelera
Cytogenetic Map2p15NCBI
HuRef263,087,448 - 63,556,897 (-)NCBIHuRef
CHM1_1263,278,766 - 63,746,004 (-)NCBICHM1_1
T2T-CHM13v2.0263,126,634 - 63,848,517 (-)NCBIT2T-CHM13v2.0
Wdpcp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,847,463 - 100,178,392 (+)NCBIGRCr8
mRatBN7.21495,645,955 - 95,977,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,998,307 - 100,329,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014101,238,649 - 101,569,383 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01497,712,185 - 98,042,918 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014106,393,959 - 106,759,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,464,351 - 106,823,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,274,144 - 102,612,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,385,822 - 102,631,969 (+)NCBI
Celera1494,655,473 - 94,975,636 (+)NCBICelera
Cytogenetic Map14q22NCBI
Wdpcp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542420,723,592 - 21,114,801 (+)NCBIChiLan1.0ChiLan1.0
WDPCP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21262,560,478 - 63,290,579 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A62,564,429 - 63,294,530 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A63,180,279 - 63,658,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A64,323,118 - 64,785,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A64,325,379 - 64,785,256 (-)Ensemblpanpan1.1panPan2
WDPCP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11062,894,818 - 63,316,555 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,877,527 - 63,316,345 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1062,782,163 - 63,206,565 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01063,901,715 - 64,326,640 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1063,884,301 - 64,325,262 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11063,584,532 - 64,009,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01063,888,001 - 64,317,400 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01064,185,201 - 64,609,983 (-)NCBIUU_Cfam_GSD_1.0
Wdpcp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629220,000,470 - 20,334,532 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364918,239,284 - 8,485,636 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364918,238,644 - 8,749,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDPCP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl378,268,922 - 78,856,893 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1378,435,154 - 78,726,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,738,390 - 82,792,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDPCP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,425,405 - 43,896,015 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,526,525 - 43,898,300 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604567,944,581 - 68,435,636 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdpcp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247629,970,904 - 10,303,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247629,901,021 - 10,303,217 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdpcp
9296 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:563
Count of miRNA genes:408
Interacting mature miRNAs:466
Transcripts:ENSMUST00000020568, ENSMUST00000128794, ENSMUST00000131135, ENSMUST00000143608, ENSMUST00000149757, ENSMUST00000156624
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse

Markers in Region
D11Hjk27  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381121,715,439 - 21,716,919UniSTSGRCm38
MGSCv371121,615,442 - 21,616,922UniSTSGRCm37
Celera1123,862,942 - 23,864,422UniSTS
Cytogenetic Map11A3.1UniSTS
cM Map1112.1UniSTS
D11Hjk28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381121,896,156 - 21,897,679UniSTSGRCm38
MGSCv371121,796,159 - 21,797,682UniSTSGRCm37
Celera1124,043,198 - 24,044,713UniSTS
Cytogenetic Map11A3.1UniSTS
cM Map1112.1UniSTS
D11Hjk29  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381121,825,079 - 21,825,382UniSTSGRCm38
MGSCv371121,725,082 - 21,725,385UniSTSGRCm37
Celera1123,972,137 - 23,972,440UniSTS
Cytogenetic Map11A3.1UniSTS
cM Map1112.1UniSTS
AV249152  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381121,898,473 - 21,898,556UniSTSGRCm38
MGSCv371121,798,476 - 21,798,559UniSTSGRCm37
Celera1124,045,507 - 24,045,590UniSTS
Cytogenetic Map11A3.1UniSTS
Whitehead/MRC_RH11389.04UniSTS
15.MMHAP28FLE3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381121,616,727 - 21,616,918UniSTSGRCm38
MGSCv371121,516,730 - 21,516,921UniSTSGRCm37
Celera1123,764,980 - 23,765,171UniSTS
Cytogenetic Map11A3.1UniSTS
Whitehead_YAC11 UniSTS
AI449204  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381659,491,772 - 59,491,999UniSTSGRCm38
GRCm381121,876,899 - 21,877,130UniSTSGRCm38
MGSCv371659,491,598 - 59,491,825UniSTSGRCm37
MGSCv371121,776,902 - 21,777,133UniSTSGRCm37
Celera1659,843,917 - 59,844,144UniSTS
Celera1124,023,987 - 24,024,218UniSTS
Cytogenetic Map16C1.3UniSTS
Cytogenetic Map11A3.1UniSTS
Whitehead/MRC_RH16742.12UniSTS
UniSTS:236528  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381121,571,342 - 21,571,584UniSTSGRCm38
MGSCv371121,471,345 - 21,471,587UniSTSGRCm37
Celera1123,719,609 - 23,719,851UniSTS
Cytogenetic Map11A3.1UniSTS
D11Mit371  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381121,844,983 - 21,845,270UniSTSGRCm38
MGSCv371121,744,986 - 21,745,273UniSTSGRCm37
Celera1123,992,029 - 23,992,310UniSTS
Cytogenetic Map11A3.1UniSTS
cM Map1111.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF424701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL714015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020568   ⟹   ENSMUSP00000020568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,522,235 - 21,848,989 (+)Ensembl
GRCm38.p6 Ensembl1121,572,235 - 21,898,989 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,763,399 - 21,767,341 (+)Ensembl
GRCm38.p6 Ensembl1121,813,399 - 21,817,341 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131135   ⟹   ENSMUSP00000120122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,522,235 - 21,614,385 (+)Ensembl
GRCm38.p6 Ensembl1121,572,235 - 21,664,385 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,639,583 - 21,661,910 (+)Ensembl
GRCm38.p6 Ensembl1121,689,583 - 21,711,910 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,522,305 - 21,647,568 (+)Ensembl
GRCm38.p6 Ensembl1121,572,305 - 21,697,568 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1121,645,129 - 21,699,350 (+)Ensembl
GRCm38.p6 Ensembl1121,695,129 - 21,749,350 (+)Ensembl
RefSeq Acc Id: NM_001364768   ⟹   NP_001351697
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,281 - 21,848,686 (+)NCBI
GRCm381121,572,281 - 21,898,686 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145425   ⟹   NP_663400
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,281 - 21,848,686 (+)NCBI
GRCm381121,572,281 - 21,898,686 (+)NCBI
MGSCv371121,472,284 - 21,798,689 (+)RGD
Celera1123,720,548 - 24,045,720 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514631   ⟹   XP_006514694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514632   ⟹   XP_006514695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514635   ⟹   XP_006514698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514636   ⟹   XP_006514699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,521,969 - 21,848,678 (+)NCBI
GRCm381121,571,969 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514637   ⟹   XP_006514700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514638   ⟹   XP_006514701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514641   ⟹   XP_006514704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,699,927 (+)NCBI
GRCm381121,572,191 - 21,749,927 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243680   ⟹   XP_011241982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314434   ⟹   XP_017169923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314435   ⟹   XP_017169924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245783   ⟹   XP_030101643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245784   ⟹   XP_030101644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245785   ⟹   XP_030101645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245786   ⟹   XP_030101646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,521,969 - 21,848,678 (+)NCBI
GRCm381121,571,969 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245787   ⟹   XP_030101647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
GRCm381121,572,191 - 21,898,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156518   ⟹   XP_036012411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156519   ⟹   XP_036012412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156520   ⟹   XP_036012413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156521   ⟹   XP_036012414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,699,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156522   ⟹   XP_036012415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391121,522,211 - 21,848,678 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001351697 (Get FASTA)   NCBI Sequence Viewer  
  NP_663400 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514694 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514695 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514698 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514699 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514700 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514701 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514704 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241982 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169923 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169924 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101643 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101644 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101645 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101646 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101647 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012411 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012412 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012413 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012414 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012415 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH56139 (Get FASTA)   NCBI Sequence Viewer  
  AAI41167 (Get FASTA)   NCBI Sequence Viewer  
  AAL24810 (Get FASTA)   NCBI Sequence Viewer  
  BAC31614 (Get FASTA)   NCBI Sequence Viewer  
  BAC38742 (Get FASTA)   NCBI Sequence Viewer  
  EDL07855 (Get FASTA)   NCBI Sequence Viewer  
  EDL07856 (Get FASTA)   NCBI Sequence Viewer  
  EDL07857 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000020568
  ENSMUSP00000020568.4
  ENSMUSP00000120122.2
GenBank Protein Q8C456 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_663400   ⟸   NM_145425
- Peptide Label: isoform 1
- UniProtKB: Q8BRR5 (UniProtKB/Swiss-Prot),   Q91ZJ2 (UniProtKB/Swiss-Prot),   Q8C456 (UniProtKB/Swiss-Prot),   B1ATJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514699   ⟸   XM_006514636
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006514698   ⟸   XM_006514635
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006514694   ⟸   XM_006514631
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006514701   ⟸   XM_006514638
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514695   ⟸   XM_006514632
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006514700   ⟸   XM_006514637
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006514704   ⟸   XM_006514641
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011241982   ⟸   XM_011243680
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169923   ⟸   XM_017314434
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169924   ⟸   XM_017314435
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030101646   ⟸   XM_030245786
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030101643   ⟸   XM_030245783
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030101644   ⟸   XM_030245784
- Peptide Label: isoform X4
- UniProtKB: Q8C456 (UniProtKB/Swiss-Prot),   Q8BRR5 (UniProtKB/Swiss-Prot),   Q91ZJ2 (UniProtKB/Swiss-Prot),   B1ATJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101645   ⟸   XM_030245785
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030101647   ⟸   XM_030245787
- Peptide Label: isoform X10
RefSeq Acc Id: NP_001351697   ⟸   NM_001364768
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000020568   ⟸   ENSMUST00000020568
RefSeq Acc Id: ENSMUSP00000120122   ⟸   ENSMUST00000131135
RefSeq Acc Id: XP_036012412   ⟸   XM_036156519
- Peptide Label: isoform X4
- UniProtKB: Q8C456 (UniProtKB/Swiss-Prot),   Q8BRR5 (UniProtKB/Swiss-Prot),   Q91ZJ2 (UniProtKB/Swiss-Prot),   B1ATJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012411   ⟸   XM_036156518
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036012413   ⟸   XM_036156520
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036012415   ⟸   XM_036156522
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036012414   ⟸   XM_036156521
- Peptide Label: isoform X9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C456-F1-model_v2 AlphaFold Q8C456 1-722 view protein structure

Promoters
RGD ID:6820475
Promoter ID:MM_KWN:6616
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   MEF_B6
Transcripts:OTTMUST00000011710,   OTTMUST00000011713,   UC007IDW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361121,471,459 - 21,471,959 (+)MPROMDB
RGD ID:8674074
Promoter ID:EPDNEW_M15068
Type:initiation region
Name:Wdpcp_1
Description:Mus musculus WD repeat containing planar cell polarity effector, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381121,572,281 - 21,572,341EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144467 AgrOrtholog
Ensembl Genes ENSMUSG00000020319 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020568 ENTREZGENE
  ENSMUST00000020568.10 UniProtKB/Swiss-Prot
  ENSMUST00000131135.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Frtz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:216560 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2144467 ENTREZGENE
NCBI Gene 216560 ENTREZGENE
PANTHER PTHR13667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING AND PLANAR CELL POLARITY EFFECTOR PROTEIN FRITZ HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Frtz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdpcp PhenoGen
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1ATJ7 ENTREZGENE, UniProtKB/TrEMBL
  B1ATQ4_MOUSE UniProtKB/TrEMBL
  FRITZ_MOUSE UniProtKB/Swiss-Prot
  Q7TNQ2_MOUSE UniProtKB/TrEMBL
  Q8BRR5 ENTREZGENE
  Q8C456 ENTREZGENE
  Q91ZJ2 ENTREZGENE
UniProt Secondary Q8BRR5 UniProtKB/Swiss-Prot
  Q91ZJ2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Wdpcp  WD repeat containing planar cell polarity effector  AV249152  expressed sequence AV249152  Symbol and/or name change 5135510 APPROVED