Slc46a1 (solute carrier family 46, member 1) - Rat Genome Database

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Gene: Slc46a1 (solute carrier family 46, member 1) Mus musculus
Analyze
Symbol: Slc46a1
Name: solute carrier family 46, member 1
RGD ID: 1319830
MGI Page MGI
Description: Enables folic acid:proton symporter activity; heme transmembrane transporter activity; and methotrexate transmembrane transporter activity. Involved in folate import across plasma membrane and heme transport. Located in apical plasma membrane and cytoplasm. Is active in basolateral plasma membrane. Is expressed in adrenal gland; metanephros; spinal cord; and testis. Human ortholog(s) of this gene implicated in hereditary folate malabsorption. Orthologous to human SLC46A1 (solute carrier family 46 member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110002C08Rik; D11Ertd18; D11Ertd18e; FLJ00234; HCP; HCP1; heme carrier protein 1; PCF; Pcft; PCFT/HCP1; proton-coupled folate transporter; solute carrier family 46 member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,356,527 - 78,362,771 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,356,523 - 78,362,885 (+)EnsemblGRCm39 Ensembl
GRCm381178,465,701 - 78,471,945 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,465,697 - 78,472,059 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,279,203 - 78,285,447 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,281,913 - 78,288,125 (+)NCBIMGSCv36mm8
Celera1188,097,777 - 88,104,021 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-Iodothyronamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-diisothiocyano-trans-stilbene-2,2'-disulfonic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-formyltetrahydrofolic acid  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
5-methyltetrahydrofolic acid  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
AM-251  (ISO)
amiodarone  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
ATP  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
bisphenol A  (ISO)
bromosulfophthalein  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calciol  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chromium(6+)  (EXP,ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (EXP)
ferroheme b  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
fructose  (ISO)
heme b  (ISO)
homocysteine  (EXP)
hydrogen peroxide  (ISO)
ICI D1694  (ISO)
L-ethionine  (ISO)
lipopolysaccharide  (EXP,ISO)
methidathion  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nitrofen  (ISO)
omeprazole  (ISO)
paracetamol  (EXP,ISO)
pemetrexed  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pyrimethamine  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (ISO)
sulfasalazine  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triptonide  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Overview of homocysteine and folate metabolism. With special references to cardiovascular disease and neural tube defects. Blom HJ and Smulders Y, J Inherit Metab Dis. 2011 Feb;34(1):75-81. doi: 10.1007/s10545-010-9177-4. Epub 2010 Sep 4.
2. Effect of chronic kidney disease on the expression of thiamin and folic acid transporters. Bukhari FJ, etal., Nephrol Dial Transplant. 2011 Jul;26(7):2137-44. doi: 10.1093/ndt/gfq675. Epub 2010 Dec 13.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Update and new concepts in vitamin responsive disorders of folate transport and metabolism. Watkins D and Rosenblatt DS, J Inherit Metab Dis. 2012 Jul;35(4):665-70. doi: 10.1007/s10545-011-9418-1. Epub 2011 Nov 23.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11386760   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14681479  
PMID:15489334   PMID:15520881   PMID:16141072   PMID:16141073   PMID:16143108   PMID:17898134   PMID:17962486   PMID:18650265   PMID:19074442   PMID:19204075   PMID:20053979   PMID:21267068  
PMID:21346251   PMID:21873635   PMID:22058337   PMID:22365888   PMID:23212123   PMID:23904512   PMID:24194600   PMID:32621820   PMID:35811443  


Genomics

Comparative Map Data
Slc46a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,356,527 - 78,362,771 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,356,523 - 78,362,885 (+)EnsemblGRCm39 Ensembl
GRCm381178,465,701 - 78,471,945 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,465,697 - 78,472,059 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,279,203 - 78,285,447 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,281,913 - 78,288,125 (+)NCBIMGSCv36mm8
Celera1188,097,777 - 88,104,021 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
SLC46A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,394,642 - 28,406,592 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1728,394,642 - 28,407,197 (-)EnsemblGRCh38hg38GRCh38
GRCh371726,721,661 - 26,733,230 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,745,788 - 23,757,355 (-)NCBINCBI36Build 36hg18NCBI36
Celera1723,583,422 - 23,594,992 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,930,003 - 22,941,574 (-)NCBIHuRef
CHM1_11726,784,574 - 26,796,145 (-)NCBICHM1_1
T2T-CHM13v2.01729,336,494 - 29,348,065 (-)NCBIT2T-CHM13v2.0
Slc46a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21063,361,504 - 63,367,940 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,361,486 - 63,368,848 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,994,160 - 68,000,596 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01067,499,487 - 67,505,923 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01062,969,164 - 62,975,602 (+)NCBIRnor_WKY
Rnor_6.01065,728,508 - 65,741,708 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,733,991 - 65,740,828 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,902,790 - 65,915,107 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,576,068 - 64,582,504 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11064,589,690 - 64,596,123 (+)NCBI
Celera1062,338,075 - 62,344,511 (+)NCBICelera
Cytogenetic Map10q25NCBI
Slc46a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,734,967 - 4,745,586 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,735,325 - 4,741,810 (+)NCBIChiLan1.0ChiLan1.0
SLC46A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11728,870,678 - 28,877,632 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,870,678 - 28,877,632 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01728,367,674 - 28,379,618 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC46A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,638,670 - 42,650,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,643,328 - 42,650,188 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,795,562 - 41,807,087 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,457,810 - 43,469,341 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,457,858 - 43,469,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,241,834 - 42,252,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,533,057 - 42,544,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,610,324 - 42,621,857 (-)NCBIUU_Cfam_GSD_1.0
Slc46a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,671,087 - 41,763,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,549,599 - 4,555,415 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365384,549,032 - 4,642,870 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC46A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,677,502 - 44,686,250 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,677,499 - 44,686,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21833,258 - 42,053 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC46A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,164,661 - 22,173,376 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,166,318 - 22,173,240 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,954,712 - 7,965,674 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc46a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,000,444 - 1,007,375 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,000,444 - 1,006,984 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:526
Count of miRNA genes:334
Interacting mature miRNAs:372
Transcripts:ENSMUST00000001126, ENSMUST00000146431, ENSMUST00000180786
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117373754182069425Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117757387380746358Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse

Markers in Region
RH125975  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,471,615 - 78,471,819UniSTSGRCm38
MGSCv371178,285,117 - 78,285,321UniSTSGRCm37
Celera1188,103,691 - 88,103,895UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
Whitehead/MRC_RH11993.94UniSTS
D11Bhm154  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,472,269 - 78,472,390UniSTSGRCm38
MGSCv371178,285,771 - 78,285,892UniSTSGRCm37
Celera1188,104,345 - 88,104,466UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.09UniSTS
D11Bhm155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,472,274 - 78,472,371UniSTSGRCm38
MGSCv371178,285,776 - 78,285,873UniSTSGRCm37
Celera1188,104,350 - 88,104,447UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.09UniSTS
D11Seg28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,463,835 - 78,463,965UniSTSGRCm38
MGSCv371178,277,337 - 78,277,467UniSTSGRCm37
Celera1188,095,911 - 88,096,041UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.06UniSTS
D11Seg30  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,467,723 - 78,467,871UniSTSGRCm38
MGSCv371178,281,225 - 78,281,373UniSTSGRCm37
Celera1188,099,799 - 88,099,947UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.08UniSTS
Slc46a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000001126   ⟹   ENSMUSP00000001126
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,356,523 - 78,362,771 (+)Ensembl
GRCm38.p6 Ensembl1178,465,697 - 78,471,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146431   ⟹   ENSMUSP00000119800
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,356,576 - 78,362,448 (+)Ensembl
GRCm38.p6 Ensembl1178,465,750 - 78,471,622 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,361,052 - 78,362,885 (+)Ensembl
GRCm38.p6 Ensembl1178,470,226 - 78,472,059 (+)Ensembl
RefSeq Acc Id: NM_026740   ⟹   NP_081016
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,356,527 - 78,362,771 (+)NCBI
GRCm381178,465,701 - 78,471,945 (+)ENTREZGENE
MGSCv371178,279,203 - 78,285,447 (+)RGD
Celera1188,097,777 - 88,104,021 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_081016   ⟸   NM_026740
- UniProtKB: Q9D1P1 (UniProtKB/Swiss-Prot),   Q6PEM8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000001126   ⟸   ENSMUST00000001126
RefSeq Acc Id: ENSMUSP00000119800   ⟸   ENSMUST00000146431

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PEM8-F1-model_v2 AlphaFold Q6PEM8 1-459 view protein structure

Promoters
RGD ID:6822143
Promoter ID:MM_KWN:8714
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000001126,   ENSMUST00000116356,   OTTMUST00000000431
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361178,279,249 - 78,279,749 (+)MPROMDB
RGD ID:8675724
Promoter ID:EPDNEW_M15893
Type:multiple initiation site
Name:Slc46a1_1
Description:Mus musculus solute carrier family 46, member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381178,465,709 - 78,465,769EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098733 AgrOrtholog
Ensembl Genes ENSMUSG00000020829 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000001126 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000119800.3 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001126 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000146431.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
InterPro MFS UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  Sugar_transporter_CS UniProtKB/Swiss-Prot
KEGG Report mmu:52466 UniProtKB/Swiss-Prot
MGD MGI:1098733 ENTREZGENE
NCBI Gene 52466 ENTREZGENE
Pfam MFS_1 UniProtKB/Swiss-Prot
PhenoGen Slc46a1 PhenoGen
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot
UniProt F6QD87_MOUSE UniProtKB/TrEMBL
  PCFT_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9D1P1 ENTREZGENE
UniProt Secondary Q571I8 UniProtKB/Swiss-Prot
  Q5SYG0 UniProtKB/Swiss-Prot
  Q8R1H7 UniProtKB/Swiss-Prot
  Q9D1P1 UniProtKB/Swiss-Prot