Ppp4r3b (protein phosphatase 4 regulatory subunit 3B) - Rat Genome Database

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Gene: Ppp4r3b (protein phosphatase 4 regulatory subunit 3B) Mus musculus
Analyze
Symbol: Ppp4r3b
Name: protein phosphatase 4 regulatory subunit 3B
RGD ID: 1319799
MGI Page MGI
Description: Predicted to enable protein phosphatase activator activity. Acts upstream of or within positive regulation of gluconeogenesis. Located in cytoplasm and nucleus. Part of protein phosphatase 4 complex. Is expressed in central nervous system and retina. Orthologous to human PPP4R3B (protein phosphatase 4 regulatory subunit 3B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW011752; AW557776; KIAA1387; mKIAA1387; RP23-393O10.1; serine/threonine-protein phosphatase 4 regulatory subunit 3B; Smek; SMEK homolog 2, suppressor of mek1; SMEK homolog 2, suppressor of mek1 (Dictyostelium); Smek2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,118,053 - 29,170,797 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,122,890 - 29,170,797 (+)EnsemblGRCm39 Ensembl
GRCm381129,172,976 - 29,220,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,172,890 - 29,220,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,072,907 - 29,120,797 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,072,996 - 29,119,136 (+)NCBIMGSCv36mm8
Celera1131,537,111 - 31,586,624 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification of SMEK2 as a candidate gene for regulation of responsiveness to dietary cholesterol in rats. Asahina M, etal., J Lipid Res. 2008 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14621295  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18287559   PMID:20876121   PMID:21386911   PMID:21423269   PMID:21652651   PMID:21873635  
PMID:24703952   PMID:28467410   PMID:29180410  


Genomics

Comparative Map Data
Ppp4r3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,118,053 - 29,170,797 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,122,890 - 29,170,797 (+)EnsemblGRCm39 Ensembl
GRCm381129,172,976 - 29,220,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,172,890 - 29,220,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,072,907 - 29,120,797 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,072,996 - 29,119,136 (+)NCBIMGSCv36mm8
Celera1131,537,111 - 31,586,624 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.46NCBI
PPP4R3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,547,292 - 55,617,622 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,547,292 - 55,618,880 (-)EnsemblGRCh38hg38GRCh38
GRCh37255,774,428 - 55,844,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,629,018 - 55,698,253 (-)NCBINCBI36Build 36hg18NCBI36
Celera255,615,913 - 55,685,202 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,510,771 - 55,579,889 (-)NCBIHuRef
CHM1_1255,706,132 - 55,775,348 (-)NCBICHM1_1
T2T-CHM13v2.0255,544,479 - 55,614,812 (-)NCBIT2T-CHM13v2.0
Ppp4r3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,118,116 - 107,166,121 (+)NCBIGRCr8
mRatBN7.214102,917,043 - 102,965,210 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14102,917,443 - 103,068,192 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14107,252,365 - 107,300,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,489,142 - 108,536,906 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014104,961,558 - 105,009,324 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014113,570,150 - 113,618,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,570,150 - 113,618,138 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,245,254 - 113,293,262 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,170,267 - 110,219,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera14101,802,954 - 101,850,699 (+)NCBICelera
Cytogenetic Map14q22NCBI
Ppp4r3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542427,461,919 - 27,520,649 (+)NCBIChiLan1.0ChiLan1.0
PPP4R3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21270,697,304 - 70,817,053 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A70,704,786 - 70,820,013 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A55,699,379 - 55,775,193 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,842,926 - 56,914,393 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,842,926 - 56,914,393 (-)Ensemblpanpan1.1panPan2
PPP4R3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,405,121 - 56,467,907 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,406,520 - 56,467,734 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,361,616 - 56,424,292 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,409,138 - 57,471,878 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,409,145 - 57,472,014 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11057,110,910 - 57,173,346 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,390,084 - 57,452,524 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,680,950 - 57,743,461 (-)NCBIUU_Cfam_GSD_1.0
Ppp4r3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,589,338 - 26,652,698 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364911,918,637 - 1,981,954 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364911,917,559 - 1,981,954 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP4R3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,650,068 - 85,711,120 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,650,064 - 85,708,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,547,020 - 90,592,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP4R3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,285,538 - 51,356,676 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,285,994 - 51,355,142 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604560,362,931 - 60,435,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp4r3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248335,936,196 - 6,009,565 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp4r3b
1435 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1093
Count of miRNA genes:527
Interacting mature miRNAs:639
Transcripts:ENSMUST00000020755, ENSMUST00000102856, ENSMUST00000127621, ENSMUST00000127818, ENSMUST00000139283, ENSMUST00000148759, ENSMUST00000156280
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse

Markers in Region
UniSTS:236541  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381129,220,370 - 29,220,594UniSTSGRCm38
MGSCv371129,120,370 - 29,120,594UniSTSGRCm37
Celera1131,586,197 - 31,586,421UniSTS
Cytogenetic Map11A3.3UniSTS
UniSTS:236543  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381129,218,849 - 29,219,067UniSTSGRCm38
MGSCv371129,118,849 - 29,119,067UniSTSGRCm37
Celera1131,584,670 - 31,584,888UniSTS
Cytogenetic Map11A3.3UniSTS
AW011752  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381129,218,742 - 29,218,867UniSTSGRCm38
MGSCv371129,118,742 - 29,118,867UniSTSGRCm37
Celera1131,584,563 - 31,584,688UniSTS
Cytogenetic Map11A3.3UniSTS
Whitehead/MRC_RH11447.36UniSTS
Whitehead/MRC_RH11447.47UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001363358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK037253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE692419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX000351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX294116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD350450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020755   ⟹   ENSMUSP00000020755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,122,890 - 29,170,797 (+)Ensembl
GRCm38.p6 Ensembl1129,172,890 - 29,220,797 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102856   ⟹   ENSMUSP00000099920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,122,890 - 29,159,641 (+)Ensembl
GRCm38.p6 Ensembl1129,172,890 - 29,209,641 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127621   ⟹   ENSMUSP00000117918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,147,198 - 29,159,486 (+)Ensembl
GRCm38.p6 Ensembl1129,197,198 - 29,209,486 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,155,625 - 29,168,556 (+)Ensembl
GRCm38.p6 Ensembl1129,205,625 - 29,218,556 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,147,187 - 29,151,156 (+)Ensembl
GRCm38.p6 Ensembl1129,197,187 - 29,201,156 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148759   ⟹   ENSMUSP00000137716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,163,624 - 29,170,797 (+)Ensembl
GRCm38.p6 Ensembl1129,213,624 - 29,220,797 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156280   ⟹   ENSMUSP00000119241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,123,747 - 29,138,350 (+)Ensembl
GRCm38.p6 Ensembl1129,173,747 - 29,188,350 (+)Ensembl
RefSeq Acc Id: NM_001363358   ⟹   NP_001350287
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,976 - 29,170,797 (+)NCBI
GRCm381129,172,976 - 29,220,797 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363359   ⟹   NP_001350288
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,976 - 29,170,797 (+)NCBI
GRCm381129,172,976 - 29,220,797 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363360   ⟹   NP_001350289
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,976 - 29,170,797 (+)NCBI
GRCm381129,172,976 - 29,220,797 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363361   ⟹   NP_001350290
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,976 - 29,170,797 (+)NCBI
GRCm381129,172,976 - 29,220,797 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363362   ⟹   NP_001350291
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,976 - 29,159,641 (+)NCBI
GRCm381129,172,976 - 29,209,641 (+)NCBI
Sequence:
RefSeq Acc Id: NM_134034   ⟹   NP_598795
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,976 - 29,170,797 (+)NCBI
GRCm381129,172,976 - 29,220,797 (+)NCBI
MGSCv371129,072,907 - 29,120,797 (+)RGD
Celera1131,537,111 - 31,586,624 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156485
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,976 - 29,170,797 (+)NCBI
GRCm381129,172,976 - 29,220,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156203   ⟹   XP_036012096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,118,053 - 29,170,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156204   ⟹   XP_036012097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,118,053 - 29,170,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156205   ⟹   XP_036012098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,118,053 - 29,170,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156206   ⟹   XP_036012099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,118,053 - 29,170,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156207   ⟹   XP_036012100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,122,907 - 29,170,797 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936677
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,118,053 - 29,170,797 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936678
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,118,053 - 29,170,003 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936679
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,118,053 - 29,170,797 (+)NCBI
Sequence:
RefSeq Acc Id: NP_598795   ⟸   NM_134034
- Peptide Label: isoform 1
- UniProtKB: Q8BY94 (UniProtKB/Swiss-Prot),   Q8BTK2 (UniProtKB/Swiss-Prot),   Q6ZPS5 (UniProtKB/Swiss-Prot),   Q5RJC1 (UniProtKB/Swiss-Prot),   Q5RJC0 (UniProtKB/Swiss-Prot),   Q5M6V9 (UniProtKB/Swiss-Prot),   Q3V0E4 (UniProtKB/Swiss-Prot),   Q8BYY0 (UniProtKB/Swiss-Prot),   Q922R5 (UniProtKB/Swiss-Prot),   Q3V166 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001350287   ⟸   NM_001363358
- Peptide Label: isoform 2
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001350288   ⟸   NM_001363359
- Peptide Label: isoform 3
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001350289   ⟸   NM_001363360
- Peptide Label: isoform 4
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001350290   ⟸   NM_001363361
- Peptide Label: isoform 5
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001350291   ⟸   NM_001363362
- Peptide Label: isoform 6
RefSeq Acc Id: ENSMUSP00000117918   ⟸   ENSMUST00000127621
RefSeq Acc Id: ENSMUSP00000020755   ⟸   ENSMUST00000020755
RefSeq Acc Id: ENSMUSP00000137716   ⟸   ENSMUST00000148759
RefSeq Acc Id: ENSMUSP00000099920   ⟸   ENSMUST00000102856
RefSeq Acc Id: ENSMUSP00000119241   ⟸   ENSMUST00000156280
RefSeq Acc Id: XP_036012096   ⟸   XM_036156203
- Peptide Label: isoform X1
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012097   ⟸   XM_036156204
- Peptide Label: isoform X2
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012098   ⟸   XM_036156205
- Peptide Label: isoform X3
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012099   ⟸   XM_036156206
- Peptide Label: isoform X4
- UniProtKB: Q3V166 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012100   ⟸   XM_036156207
- Peptide Label: isoform X5
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q922R5-F1-model_v2 AlphaFold Q922R5 1-820 view protein structure

Promoters
RGD ID:8674162
Promoter ID:EPDNEW_M15112
Type:multiple initiation site
Name:Ppp4r3b_1
Description:Mus musculus protein phosphatase 4 regulatory subunit 3B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381129,172,976 - 29,173,036EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144474 AgrOrtholog
Ensembl Genes ENSMUSG00000020463 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020755 ENTREZGENE
  ENSMUST00000020755.12 UniProtKB/Swiss-Prot
  ENSMUST00000102856 ENTREZGENE
  ENSMUST00000102856.9 UniProtKB/Swiss-Prot
  ENSMUST00000127621.3 UniProtKB/TrEMBL
  ENSMUST00000148759.2 UniProtKB/TrEMBL
  ENSMUST00000156280.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF625 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2144474 ENTREZGENE
NCBI Gene 104570 ENTREZGENE
PANTHER ATP SYNTHASE GAMMA-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 3B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SMK-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ppp4r3b PhenoGen
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt M0QW93_MOUSE UniProtKB/TrEMBL
  P4R3B_MOUSE UniProtKB/Swiss-Prot
  Q3V0E4 ENTREZGENE
  Q3V166 ENTREZGENE, UniProtKB/TrEMBL
  Q5M6V9 ENTREZGENE
  Q5M6W0_MOUSE UniProtKB/TrEMBL
  Q5RJB9_MOUSE UniProtKB/TrEMBL
  Q5RJC0 ENTREZGENE
  Q5RJC1 ENTREZGENE
  Q6ZPS5 ENTREZGENE
  Q8BTK2 ENTREZGENE
  Q8BY94 ENTREZGENE
  Q8BYY0 ENTREZGENE
  Q922R5 ENTREZGENE
UniProt Secondary Q3V0E4 UniProtKB/Swiss-Prot
  Q5M6V9 UniProtKB/Swiss-Prot
  Q5RJC0 UniProtKB/Swiss-Prot
  Q5RJC1 UniProtKB/Swiss-Prot
  Q6ZPS5 UniProtKB/Swiss-Prot
  Q8BTK2 UniProtKB/Swiss-Prot
  Q8BY94 UniProtKB/Swiss-Prot
  Q8BYY0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-24 Ppp4r3b  protein phosphatase 4 regulatory subunit 3B  Smek2  SMEK homolog 2, suppressor of mek1 (Dictyostelium)  Symbol and/or name change 5135510 APPROVED