Trpd52l3 (tumor protein D52-like 3) - Rat Genome Database

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Gene: Trpd52l3 (tumor protein D52-like 3) Mus musculus
Analyze
Symbol: Trpd52l3
Name: tumor protein D52-like 3
RGD ID: 1319713
MGI Page MGI
Description: Predicted to be active in cytoplasm. Orthologous to human TPD52L3 (TPD52 like 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4931412G03Rik; protein kinase NYD-SP25; tumor protein D55
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391929,981,190 - 29,983,420 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1929,981,190 - 29,983,418 (+)EnsemblGRCm39 Ensembl
GRCm381930,003,790 - 30,006,020 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1930,003,790 - 30,006,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv371930,078,280 - 30,080,510 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361930,069,787 - 30,072,015 (+)NCBIMGSCv36mm8
Celera1930,779,162 - 30,781,392 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1924.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:31201419  


Genomics

Comparative Map Data
Trpd52l3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391929,981,190 - 29,983,420 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1929,981,190 - 29,983,418 (+)EnsemblGRCm39 Ensembl
GRCm381930,003,790 - 30,006,020 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1930,003,790 - 30,006,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv371930,078,280 - 30,080,510 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361930,069,787 - 30,072,015 (+)NCBIMGSCv36mm8
Celera1930,779,162 - 30,781,392 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1924.68NCBI
TPD52L3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3896,328,375 - 6,331,891 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl96,328,375 - 6,331,891 (+)EnsemblGRCh38hg38GRCh38
GRCh3796,328,375 - 6,331,891 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3696,318,375 - 6,321,900 (+)NCBINCBI36Build 36hg18NCBI36
Celera96,265,808 - 6,269,359 (+)NCBICelera
Cytogenetic Map9p24.1NCBI
HuRef96,283,854 - 6,287,404 (+)NCBIHuRef
CHM1_196,329,148 - 6,332,699 (+)NCBICHM1_1
T2T-CHM13v2.096,333,439 - 6,336,954 (+)NCBIT2T-CHM13v2.0
Tpd52l3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,195,695 - 237,197,988 (+)NCBIGRCr8
mRatBN7.21227,781,173 - 227,785,040 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,773,724 - 227,784,467 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,184,147 - 236,186,436 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,113,832 - 243,116,121 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,935,692 - 235,937,981 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,187,429 - 248,202,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,195,797 - 248,196,492 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,647,170 - 248,649,962 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01255,894,623 - 255,897,958 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,743,651 - 233,745,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,857,890 - 233,908,447 (+)NCBI
Celera1224,928,841 - 224,931,130 (+)NCBICelera
Cytogenetic Map1q52NCBI
Tpd52l3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543410,291,418 - 10,293,330 (+)NCBIChiLan1.0ChiLan1.0
TPD52L3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211118,249,095 - 118,251,637 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19118,255,043 - 118,257,585 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v096,140,212 - 6,143,796 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.196,320,856 - 6,324,404 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl96,320,856 - 6,324,404 (+)Ensemblpanpan1.1panPan2
TPD52L3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11127,353,537 - 27,355,204 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1127,353,873 - 27,354,238 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1126,128,637 - 26,130,297 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01128,203,704 - 28,205,364 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1128,204,034 - 28,204,399 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11126,927,919 - 26,929,576 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01126,746,759 - 26,748,416 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01127,415,765 - 27,417,425 (+)NCBIUU_Cfam_GSD_1.0
Tpd52l3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947142,420,019 - 142,421,091 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936539872,884 - 873,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPD52L3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,840,563 - 215,842,113 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,841,463 - 215,842,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,396,953 - 241,398,128 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPD52L3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11273,170,637 - 73,174,919 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603861,546,934 - 61,549,819 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Trpd52l3
133 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:281
Interacting mature miRNAs:304
Transcripts:ENSMUST00000025727
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
1357596Tgct3_mtesticular germ cell tumor 3 (mouse)Not determined192198409132912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
1357568Tgct4_mtesticular germ cell tumor 4 (mouse)Not determined192777198535295381Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse

Markers in Region
UniSTS:487881  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381930,003,791 - 30,004,926UniSTSGRCm38
MGSCv371930,078,281 - 30,079,416UniSTSGRCm37
Celera1930,779,163 - 30,780,298UniSTS
Cytogenetic Map19C2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000025727   ⟹   ENSMUSP00000025727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,981,190 - 29,983,418 (+)Ensembl
GRCm38.p6 Ensembl1930,003,790 - 30,006,018 (+)Ensembl
RefSeq Acc Id: NM_025741   ⟹   NP_080017
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391929,981,190 - 29,983,420 (+)NCBI
GRCm381930,003,790 - 30,006,020 (+)ENTREZGENE
MGSCv371930,078,280 - 30,080,510 (+)RGD
Celera1930,779,162 - 30,781,392 (+)RGD
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_080017 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI25315 (Get FASTA)   NCBI Sequence Viewer  
  AAI25317 (Get FASTA)   NCBI Sequence Viewer  
  BAB30205 (Get FASTA)   NCBI Sequence Viewer  
  BAB30244 (Get FASTA)   NCBI Sequence Viewer  
  EDL41695 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025727
  ENSMUSP00000025727.5
RefSeq Acc Id: NP_080017   ⟸   NM_025741
- UniProtKB: Q9CQ14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000025727   ⟸   ENSMUST00000025727

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQ14-F1-model_v2 AlphaFold Q9CQ14 1-231 view protein structure

Promoters
RGD ID:13679240
Promoter ID:EPDNEW_M23769
Type:initiation region
Name:Trpd52l3_1
Description:Mus musculus tumor protein D52-like 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381930,003,797 - 30,003,857EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913995 AgrOrtholog
Ensembl Genes ENSMUSG00000024815 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025727 ENTREZGENE
  ENSMUST00000025727.6 UniProtKB/TrEMBL
InterPro TPD52 UniProtKB/TrEMBL
KEGG Report mmu:66745 UniProtKB/TrEMBL
MGD MGI:1913995 ENTREZGENE
NCBI Gene 66745 ENTREZGENE
PANTHER TPD52 UniProtKB/TrEMBL
  TUMOR PROTEIN D55 UniProtKB/TrEMBL
Pfam TPD52 UniProtKB/TrEMBL
PhenoGen Trpd52l3 PhenoGen
UniProt Q9CQ14 ENTREZGENE, UniProtKB/TrEMBL