F11 (coagulation factor XI) - Rat Genome Database

Name: F11
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: F11 (coagulation factor XI) Mus musculus

Analyze

Symbol:

F11

Name:

coagulation factor XI

RGD ID:

1319674

MGI Page

MGI

Description:

Predicted to have identical protein binding activity and serine-type aminopeptidase activity. Involved in regulation of blood coagulation. Predicted to localize to extracellular space. Is expressed in liver left lobe and liver right lobe. Used to study factor XI deficiency. Human ortholog(s) of this gene implicated in factor XI deficiency and thrombosis. Orthologous to human F11 (coagulation factor XI).

Type:

protein-coding

RefSeq Status:

REVIEWED

Also known as:

1600027G01Rik; AI503996; Cf11; FX; FXI; plasma thromboplastin antecedent; PTA

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	F11 (coagulation factor XI)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	F11 (coagulation factor XI)	HGNC	NCBI, OMA, HomoloGene, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	F11 (coagulation factor XI)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	F11 (coagulation factor XI)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	F11 (coagulation factor XI)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101967202 (coagulation factor XI)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	F11 (coagulation factor XI)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	F11 (coagulation factor XI)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	F11 (coagulation factor XI)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KLKB1 (kallikrein B1)	HGNC	OrthoDB, OrthoMCL
Alliance orthologs ³
Rattus norvegicus (Norway rat):	F11 (coagulation factor XI)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	F11 (coagulation factor XI)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	45,693,696 - 45,715,092 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	45,694,211 - 45,715,068 (-)	Ensembl
GRCm38	8	45,240,659 - 45,262,055 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	45,241,174 - 45,262,031 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	46,326,524 - 46,347,385 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	46,739,987 - 46,760,848 (-)	NCBI			mm8
Celera	8	47,928,261 - 47,949,034 (-)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	25.14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Cerebral Hemorrhage (ISO)

factor X deficiency (ISO)

factor XI deficiency (IEA,ISO)

genetic disease (ISO)

hemorrhagic disease (ISO)

hypertension (ISO)

middle cerebral artery infarction (IMP)

Noonan syndrome (ISO)

Sepsis (ISO)

Spontaneous Abortions (ISO)

thrombocytopenia (ISO)

thrombosis (ISO)

Venous Thrombosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

(S)-amphetamine (EXP)

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

acetamide (ISO)

aflatoxin B1 (EXP,ISO)

amiodarone (EXP)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcium dichloride (ISO)

carbon nanotube (EXP)

clofibrate (EXP)

copper(II) sulfate (ISO)

cyclosporin A (EXP,ISO)

dichloroacetic acid (EXP)

dicrotophos (ISO)

dorsomorphin (ISO)

EC 3.4.15.1 (peptidyl-dipeptidase A) inhibitor (ISO)

endosulfan (ISO)

ethanol (EXP)

Ethyl icosapentate (ISO)

genistein (EXP)

kaolin (ISO)

methotrexate (EXP)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (EXP,ISO)

phenobarbital (EXP)

pirinixic acid (EXP)

raloxifene (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tetrachloroethene (EXP)

tetrachloromethane (EXP,ISO)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blood coagulation (ISO)

hemostasis (IEA)

plasminogen activation (ISO)

positive regulation of fibrinolysis (ISO)

proteolysis (ISO)

regulation of blood coagulation (IMP)

Cellular Component

extracellular region (IEA)

extracellular space (ISO)

Molecular Function

heparin binding (IEA)

hydrolase activity (IEA)

identical protein binding (ISO)

peptidase activity (IEA)

protein binding (ISO)

serine-type aminopeptidase activity (ISO)

serine-type endopeptidase activity (IEA)

serine-type peptidase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

acenocoumarol pharmacodynamics pathway (ISO)

alteplase pharmacodynamics pathway (ISO)

aminocaproic acid pharmacodynamics pathway (ISO)

anistreplase pharmacodynamics pathway (ISO)

aprotinin pharmacodynamics pathway (ISO)

argatroban pharmacodynamics pathway (ISO)

bivalirudin pharmacodynamics pathway (ISO)

coagulation cascade pathway (IEA,ISO)

complement system pathway (IEA)

dicoumarol pharmacodynamics pathway (ISO)

enoxaparin pharmacodynamics pathway (ISO)

fondaparinux pharmacodynamics pathway (ISO)

heparin pharmacodynamics pathway (ISO)

phenindione pharmacodynamics pathway (ISO)

reteplase pharmacodynamics pathway (ISO)

tranexamic acid pharmacodynamics pathway (ISO)

warfarin pharmacodynamics pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal cardiovascular system physiology (IAGP)

abnormal heart morphology (IAGP)

abnormal liver morphology (IAGP)

abnormal lymph circulation (IAGP)

abnormal lymph node cortex morphology (IAGP)

abnormal lymph node morphology (IAGP)

abnormal neutrophil morphology (IAGP)

abnormal pulmonary alveolus morphology (IAGP)

abnormal respiratory system morphology (IAGP)

abnormal respiratory system physiology (IAGP)

abnormal thrombosis (IAGP)

abnormal trachea morphology (IAGP)

anisocytosis (IAGP)

cardiac fibrosis (IAGP)

decreased cerebral infarction size (IAGP)

decreased leukocyte cell number (IAGP)

decreased neutrophil cell number (IAGP)

decreased platelet aggregation (IAGP)

decreased susceptibility to ischemic brain injury (IAGP)

enlarged heart (IAGP)

enlarged lymph nodes (IAGP)

gangrene (IAGP)

hepatic necrosis (IAGP)

hypoactivity (IAGP)

increased number of Howell-Jolly bodies (IAGP)

increased partial thromboplastin time (IAGP)

increased vascular endothelial cell number (IAGP)

internal hemorrhage (IAGP)

intracranial hemorrhage (IAGP)

liver fibrosis (IAGP)

liver hemorrhage (IAGP)

lung hemorrhage (IAGP)

lung inflammation (IAGP)

lymph node hemorrhage (IAGP)

myocardial fiber degeneration (IAGP)

myocardium necrosis (IAGP)

neonatal lethality, incomplete penetrance (IAGP)

postnatal growth retardation (IAGP)

premature death (IAGP)

respiratory distress (IAGP)

reticulocytosis (IAGP)

thick pulmonary interalveolar septum (IAGP)

References

References - curated


1.	Asakai R, etal., Proc Natl Acad Sci U S A. 1989 Oct;86(20):7667-71.
2.	de Haan M, etal., Am J Med Genet. 1988 Feb;29(2):277-82.
3.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4.	Kleinschnitz C, etal., J Exp Med. 2006 Mar 20;203(3):513-8. Epub 2006 Mar 13.
5.	Laudes IJ, etal., Am J Pathol. 2002 May;160(5):1867-75.
6.	Li Y, etal., J Thromb Haemost. 2009 Nov;7(11):1802-8. doi: 10.1111/j.1538-7836.2009.03544.x. Epub 2009 Jul 6.
7.	Lunghi B, etal., Thromb Res. 2012 Sep;130(3):563-4. doi: 10.1016/j.thromres.2012.05.004. Epub 2012 May 25.
8.	Meijers JC, etal., N Engl J Med. 2000 Mar 9;342(10):696-701.
9.	MGD data from the GO Consortium
10.	Nobukata H, etal., Toxicol Lett. 1999 Jan 11;104(1-2):93-101.
11.	Norris LA, Best Pract Res Clin Obstet Gynaecol. 2003 Jun;17(3):369-83.
12.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13.	OMIM Disease Annotation Pipeline
14.	Pipeline to import KEGG annotations from KEGG into RGD
15.	Pipeline to import SMPDB annotations from SMPDB into RGD
16.	RGD automated import pipeline
17.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18.	RGD automated import pipeline for gene-chemical interactions
19.	Sato E, etal., Am J Hematol. 2000 Apr;63(4):165-9.
20.	Smith SA, etal., Crit Rev Biochem Mol Biol. 2015;50(4):326-36. doi: 10.3109/10409238.2015.1050550. Epub 2015 May 28.
21.	Sokol J, etal., J Obstet Gynaecol. 2015;35(6):621-4. doi: 10.3109/01443615.2014.991284. Epub 2014 Dec 17.
22.	Ventura C, etal., Thromb Haemost. 2000 Nov;84(5):833-40.

Additional References at PubMed

PMID:7613034	PMID:9242536	PMID:9518045	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11159184	PMID:11841337	PMID:12008966	PMID:12477932	PMID:15733058	PMID:15985536
PMID:15996948	PMID:16009717	PMID:16141072	PMID:16141073	PMID:18491973	PMID:19661487	PMID:20005807	PMID:20634381	PMID:21267068	PMID:21724997	PMID:22006565	PMID:23472758
PMID:23487423	PMID:23515926	PMID:23929304	PMID:24066149	PMID:24118982	PMID:24947525	PMID:26153520	PMID:26800563	PMID:26817955	PMID:27046148	PMID:27188843	PMID:27596064
PMID:27913422	PMID:28148841	PMID:28492700	PMID:28677246	PMID:29207114	PMID:29365314	PMID:30591525	PMID:30898865	PMID:31125187

Genomics

Comparative Map Data

F11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	45,693,696 - 45,715,092 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	45,694,211 - 45,715,068 (-)	Ensembl
GRCm38	8	45,240,659 - 45,262,055 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	45,241,174 - 45,262,031 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	46,326,524 - 46,347,385 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	46,739,987 - 46,760,848 (-)	NCBI			mm8
Celera	8	47,928,261 - 47,949,034 (-)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	25.14	NCBI

F11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	186,265,945 - 186,288,806 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	4	186,266,189 - 186,289,681 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	186,265,964 - 186,290,727 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	187,187,343 - 187,210,835 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	187,424,112 - 187,447,829 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	187,562,426 - 187,585,083	NCBI
Celera	4	184,511,477 - 184,537,546 (+)	NCBI
Cytogenetic Map	4	q35.2	NCBI
HuRef	4	182,938,469 - 182,962,233 (+)	NCBI		HuRef
CHM1_1	4	187,163,556 - 187,187,273 (+)	NCBI		CHM1_1

F11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	46,986,107 - 47,009,015 (+)	NCBI
Rnor_6.0 Ensembl	16	50,179,458 - 50,201,698 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	50,179,458 - 50,201,644 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	49,902,415 - 49,924,601 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	50,276,330 - 50,298,903 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	50,287,001 - 50,298,978 (+)	NCBI
Celera	16	44,976,615 - 44,998,530 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

F11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	22,811,380 - 22,830,563 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	22,811,211 - 22,830,281 (-)	NCBI	ChiLan1.0	ChiLan1.0

F11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	190,643,733 - 190,666,512 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	190,643,733 - 190,666,512 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	178,436,865 - 178,459,568 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

F11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	44,469,609 - 44,492,833 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	44,469,632 - 44,540,292 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	44,956,542 - 44,972,975 (-)	NCBI
ROS_Cfam_1.0	16	46,683,089 - 46,700,923 (-)	NCBI
UMICH_Zoey_3.1	16	44,652,096 - 44,668,510 (-)	NCBI
UNSW_CanFamBas_1.0	16	45,264,846 - 45,281,307 (-)	NCBI
UU_Cfam_GSD_1.0	16	45,395,778 - 45,412,243 (-)	NCBI

LOC101967202
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	34,886,563 - 34,903,578 (+)	NCBI
SpeTri2.0	NW_004936554	3,205,539 - 3,223,228 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

F11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	9,045,997 - 9,073,520 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	9,045,990 - 9,073,552 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

F11
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	132,180,026 - 132,207,081 (+)	NCBI
ChlSab1.1 Ensembl	7	132,180,336 - 132,208,155 (+)	Ensembl

F11
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624769	17,093,643 - 17,115,716 (+)	NCBI

Position Markers

AI503996

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	45,241,234 - 45,241,486	UniSTS	GRCm38
MGSCv37	8	46,326,588 - 46,326,840	UniSTS	GRCm37
Celera	8	47,928,325 - 47,928,577	UniSTS
Cytogenetic Map	8	A4	UniSTS
Cytogenetic Map	8	B1.1	UniSTS
Whitehead/MRC_RH	8	534.59	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1301088	Alcw6_m	alcohol withdrawal 6 (mouse)			Not determined		8	15016544	49016701	Mouse
1300912	Daq19_m	directional asymmetry QTL 19 (mouse)			Not determined		8	15016544	49016701	Mouse
1301298	Pgia4_m	proteoglycan induced arthritis 4 (mouse)			Not determined		8	16079345	50079669	Mouse
1301550	Fembrs2_m	femur breaking strength 2 (mouse)			Not determined		8	17853943	51854071	Mouse
1301160	Eae14_m	susceptibility to experimental allergic encephalomyelitis 14 (mouse)			Not determined		8	18987864	52987996	Mouse
1300603	Cd8ts2_m	CD8 T cell subset 2 (mouse)			Not determined		8	18987864	52987996	Mouse
10043974	Obq30_m	obesity QTL 30 (mouse)			Not determined		8	26130285	60130285	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
10043990	Hbnr12_m	Heligmosomoides bakeri nematode resistance 12 (mouse)			Not determined		8	32786988	50837502	Mouse
1301936	Trigq2_m	triglyceride QTL 2 (mouse)			Not determined		8	33837362	67837502	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301139	Lmr10_m	leishmaniasis resistance 10 (mouse)			Not determined		8	34853943	57344598	Mouse
11041902	Lmr10a_m	leishmaniasis resistance 10a (mouse)					8	34853943	57344598	Mouse
11049577	Lmr10b_m	leishmaniasis resistance 10b (mouse)					8	34853943	57344598	Mouse
11049578	Lmr10c_m	leishmaniasis resistance 10c (mouse)					8	34853943	57344598	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	75
Interacting mature miRNAs:	76
Transcripts:	ENSMUST00000034064
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_028066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011242172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003947216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF356627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000034064 ⟹ ENSMUSP00000034064

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	45,241,174 - 45,262,031 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000210622

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	45,250,073 - 45,262,031 (-)	Ensembl

RefSeq Acc Id:

NM_028066 ⟹ NP_082342

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	45,694,205 - 45,715,068 (-)	NCBI
GRCm38	8	45,241,168 - 45,262,031 (-)	NCBI
MGSCv37	8	46,326,524 - 46,347,385 (-)	RGD
Celera	8	47,928,261 - 47,949,034 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

ATACCGGCTCACGTAGAAAAAGGACAAGACTATAGGAAAGAAAGCAAACACTCCGCCGAGGACT
ACAGCAAAGACAGAAAGTATCTGCAGGATGACCTCATTACATCAGGTGTTATATTTTATCTTTT
TTGCCTCAGTTTCTAGTGAATGCGTTACTAAGGTCTTCAAAGACATCAGCTTTCAAGGAGGTGA
CCTGAGTACTGTTTTCACACCGAGCGCCACATACTGCCGCTTGGTCTGCACTCACCACCCACGG
TGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCGGATGATCCTACCAAATGGTTTGCCTGCA
TCCTGAAGGACAGCGTCACAGAAATATTGCCAATGGTAAACATGACAGGCGCGATCTCTGGATA
TTCCTTCAAGCAATGCCCTCAGCAATTAAGTACTTGCAGCAAAGATGTGTACGTGAACCTAGAC
ATGAAGGGCATGAACTATAACAGCTCTGTCGTGAAGAATGCTCGAGAATGCCAGGAGAGATGCA
CAGACGATGCCCACTGCCAGTTTTTCACATACGCAACAGGGTATTTTCCCAGTGTGGACCATCG
TAAAATGTGTCTTTTGAAGTACACCCGAACGGGGACGCCAACCACAATAACGAAGCTCAATGGC
GTGGTATCTGGATTTTCACTGAAGTCCTGTGGACTTTCAAACTTGGCTTGTATCAGGGACATTT
TCCCTAACACGGTGCTGGCAGACCTTAACATTGACAGCGTGGTGGCCCCAGATGCTTTTGTCTG
TCGTCGCATCTGCACGCATCACCCCACTTGTTTGTTCTTCACATTCTTTTCCCAAGCATGGCCG
AAAGAATCTCAGAGACATCTTTGTCTCCTTAAAACCTCTGAAAGTGGATTACCAAGCACACGCA
TTACAAAGAGCCACGCCCTTTCGGGCTTCAGTCTCCAGCACTGCAGGCACAGTGTCCCAGTATT
CTGCCATCCGTCCTTTTACAACGACACTGATTTCTTGGGAGAAGAGCTGGACATCGTCGATGTG
AAAGGCCAAGAAACCTGTCAGAAAACGTGTACCAATAACGCCCGCTGCCAGTTCTTTACCTACT
ATCCATCGCACAGACTGTGCAATGAGAGGAACCGCAGGGGCAGATGTTACCTAAAGCTTTCCTC
CAATGGATCTCCAACGAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACTCACTGAGGCTG
TGCAAAATGGATAATGTGTGCACAACTAAAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTG
TTCACGGTGAGTGGCCATGGCAGGTGACTCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTC
CATCATTGGAAACCAATGGATACTGACAGCAGCTCATTGTTTCTCTGGGATAGAGACACCTAAA
AAGCTGCGTGTCTACGGTGGCATTGTAAATCAATCAGAAATAAATGAAGGGACTGCTTTCTTCA
GGGTTCAAGAAATGATAATTCATGATCAGTATACGACAGCAGAAAGTGGGTATGATATTGCCCT
GTTAAAACTGGAATCAGCCATGAATTACACAGATTTTCAGCGGCCAATATGCCTGCCTTCCAAA
GGAGATAGAAACGCAGTGCACACAGAATGCTGGGTGACTGGATGGGGGTACACAGCACTAAGAG
GTGAAGTACAAAGTACTCTTCAGAAAGCCAAGGTTCCATTGGTGTCAAATGAAGAATGTCAGAC
AAGATACAGAAGACACAAAATAACCAATAAGATGATCTGTGCAGGCTACAAAGAAGGAGGGAAG
GATACGTGCAAGGGAGATTCTGGAGGGCCCCTGTCCTGCAAATACAATGGGGTCTGGCACTTGG
TGGGCATCACAAGCTGGGGTGAAGGCTGTGGTCAGAAGGAGAGACCGGGGGTCTACACGAACGT
GGCCAAGTACGTGGACTGGATTCTGGAGAAAACTCAAACAGTCTGAAAGAGTTCAACTGGTATC
ACTTTGTGGCCCTGGAAGATTATTCCATAGAAATGAGCTTGACGTCTCTGATGAAGACACTGGG
ATACTGACTCTTCCACTGTAACCAATTGAATGGCCTTGATGTACGTAAGAACACCCAGAAAGAA
AACTATTATTTTCAGAATTCCTGATCTGGGAGAACCACTGGTTGTTTTCTGCATCCAGCTACTA
CTCAAGGAAACAAATACAGCAAGGAGATTTTAAAAATAAAAACACATCAGATATATAAGGAAAA
TATCAA

hide sequence

RefSeq Acc Id:

XM_006509244 ⟹ XP_006509307

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	45,693,696 - 45,715,087 (-)	NCBI
GRCm38	8	45,240,659 - 45,262,050 (-)	NCBI

Sequence:

show sequence

ATTTAAGCAACAGTGTTCCATACCGGCTCACGTAGAAAAAGGACAAGACTATAGGAAAGAAAGC
AAACACTCCGCCGAGGACTACAGCAAAGACAGAAAGTATCTGCAGAATGCGTTACTAAGGTCTT
CAAAGACATCAGCTTTCAAGGAGGTGACCTGAGTACTGTTTTCACACCGAGCGCCACATACTGC
CGCTTGGTCTGCACTCACCACCCACGGTGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCGG
ATGATCCTACCAAATGGTTTGCCTGCATCCTGAAGGACAGCGTCACAGAAATATTGCCAATGGT
AAACATGACAGGCGCGATCTCTGGATATTCCTTCAAGCAATGCCCTCAGCAATTAAGTACTTGC
AGCAAAGATGTGTACGTGAACCTAGACATGAAGGGCATGAACTATAACAGCTCTGTCGTGAAGA
ATGCTCGAGAATGCCAGGAGAGATGCACAGACGATGCCCACTGCCAGTTTTTCACATACGCAAC
AGGGTATTTTCCCAGTGTGGACCATCGTAAAATGTGTCTTTTGAAGTACACCCGAACGGGGACG
CCAACCACAATAACGAAGCTCAATGGCGTGGTATCTGGATTTTCACTGAAGTCCTGTGGACTTT
CAAACTTGGCTTGTATCAGGGACATTTTCCCTAACACGGTGCTGGCAGACCTTAACATTGACAG
CGTGGTGGCCCCAGATGCTTTTGTCTGTCGTCGCATCTGCACGCATCACCCCACTTGTTTGTTC
TTCACATTCTTTTCCCAAGCATGGCCGAAAGAATCTCAGAGACATCTTTGTCTCCTTAAAACCT
CTGAAAGTGGATTACCAAGCACACGCATTACAAAGAGCCACGCCCTTTCGGGCTTCAGTCTCCA
GCACTGCAGGCACAGTGTCCCAGTATTCTGCCATCCGTCCTTTTACAACGACACTGATTTCTTG
GGAGAAGAGCTGGACATCGTCGATGTGAAAGGCCAAGAAACCTGTCAGAAAACGTGTACCAATA
ACGCCCGCTGCCAGTTCTTTACCTACTATCCATCGCACAGACTGTGCAATGAGAGGAACCGCAG
GGGCAGATGTTACCTAAAGCTTTCCTCCAATGGATCTCCAACGAGAATACTTCATGGGAGGGGA
GGCATCTCTGGATACTCACTGAGGCTGTGCAAAATGGATAATGTGTGCACAACTAAAATCAACC
CCAGAGTGGTAGGAGGAGCTGCGTCTGTTCACGGTGAGTGGCCATGGCAGGTGACTCTGCACAT
CAGCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCAATGGATACTGACAGCAGCTCAT
TGTTTCTCTGGGATAGAGACACCTAAAAAGCTGCGTGTCTACGGTGGCATTGTAAATCAATCAG
AAATAAATGAAGGGACTGCTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAGTATACGAC
AGCAGAAAGTGGGTATGATATTGCCCTGTTAAAACTGGAATCAGCCATGAATTACACAGATTTT
CAGCGGCCAATATGCCTGCCTTCCAAAGGAGATAGAAACGCAGTGCACACAGAATGCTGGGTGA
CTGGATGGGGGTACACAGCACTAAGAGGTGAAGTACAAAGTACTCTTCAGAAAGCCAAGGTTCC
ATTGGTGTCAAATGAAGAATGTCAGACAAGATACAGAAGACACAAAATAACCAATAAGATGATC
TGTGCAGGCTACAAAGAAGGAGGGAAGGATACGTGCAAGGGAGATTCTGGAGGGCCCCTGTCCT
GCAAATACAATGGGGTCTGGCACTTGGTGGGCATCACAAGCTGGGGTGAAGGCTGTGGTCAGAA
GGAGAGACCGGGGGTCTACACGAACGTGGCCAAGTACGTGGACTGGATTCTGGAGAAAACTCAA
ACAGTCTGAAAGAGTTCAACTGGTATCACTTTGTGGCCCTGGAAGATTATTCCATAGAAATGAG
CTTGACGTCTCTGATGAAGACACTGGGATACTGACTCTTCCACTGTAACCAATTGAATGGCCTT
GATGTACGTAAGAACACCCAGAAAGAAAACTATTATTTTCAGAATTCCTGATCTGGGAGAACCA
CTGGTTGTTTTCTGCATCCAGCTACTACTCAAGGAAACAAATACAGCAAGGAGATTTTAAAAAT
AAAAACACATCAGATATATAAGGAAAATATCAAGTAAGGGTGCTGTCTGCCTTTTTAGTCTCTG
TGACAAATACCTAAAGTAGTTCACAAAAGGAAAAATTTCTTTTGCACACCTTTCCTCAGGTTTC
AGCCTACGATCTGGTTGGCTGGCCCCATTGCTTTAGCCTGAGGTGAGGCAGAACCATATATCCA
TAGGAGGCTGTGGAGAAGGAGTCTGCTCAGTTCATGGTAGGCAGGAAGCAAATGGAAACAGGAA
TGTATTGGGGACACGAATGGTCCTTCAAGAATATACTGTCAATCATTTACTTCTTCCAGAGACA
TCCTGCTCCCTAACCTCCCTTTCCTTCCCAGATAACACCTCTGTCCTAGCTGGCCCCAAGAGAT
CAGGTAGAAAGGCAGAGGAAACCATATAAAGAGTTGTTAAGTGCAAAATCAAAACCAGAAGGAA
TGCAGACAGGAGCTCAAAATGTCCATTTATAAGAATCTTTTTTTTTCTCTGCCTATATGAATCC
CCCTCCTGTATAAAGGACTGACTCAATTCA

hide sequence

RefSeq Acc Id:

XM_006509245 ⟹ XP_006509308

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	45,693,696 - 45,708,324 (-)	NCBI
GRCm38	8	45,240,659 - 45,255,287 (-)	NCBI

Sequence:

show sequence

CTGCCGCTTGGTCTGCACTCACCACCCACGGTGCTTGCTCTTCACGTTCATGGCTGAGTCATCT
TCGGATGATCCTACCAAATGAACAGGTTTGCCTGCATCCTGAAGGACAGCGTCACAGAAATATT
GCCAATGGTAAACATGACAGGCGCGATCTCTGGATATTCCTTCAAGCAATGCCCTCAGCAATTA
AGTACTTGCAGCAAAGATGTGTACGTGAACCTAGACATGAAGGGCATGAACTATAACAGCTCTG
TCGTGAAGAATGCTCGAGAATGCCAGGAGAGATGCACAGACGATGCCCACTGCCAGTTTTTCAC
ATACGCAACAGGGTATTTTCCCAGTGTGGACCATCGTAAAATGTGTCTTTTGAAGTACACCCGA
ACGGGGACGCCAACCACAATAACGAAGCTCAATGGCGTGGTATCTGGATTTTCACTGAAGTCCT
GTGGACTTTCAAACTTGGCTTGTATCAGGGACATTTTCCCTAACACGGTGCTGGCAGACCTTAA
CATTGACAGCGTGGTGGCCCCAGATGCTTTTGTCTGTCGTCGCATCTGCACGCATCACCCCACT
TGTTTGTTCTTCACATTCTTTTCCCAAGCATGGCCGAAAGAATCTCAGAGACATCTTTGTCTCC
TTAAAACCTCTGAAAGTGGATTACCAAGCACACGCATTACAAAGAGCCACGCCCTTTCGGGCTT
CAGTCTCCAGCACTGCAGGCACAGTGTCCCAGTATTCTGCCATCCGTCCTTTTACAACGACACT
GATTTCTTGGGAGAAGAGCTGGACATCGTCGATGTGAAAGGCCAAGAAACCTGTCAGAAAACGT
GTACCAATAACGCCCGCTGCCAGTTCTTTACCTACTATCCATCGCACAGACTGTGCAATGAGAG
GAACCGCAGGGGCAGATGTTACCTAAAGCTTTCCTCCAATGGATCTCCAACGAGAATACTTCAT
GGGAGGGGAGGCATCTCTGGATACTCACTGAGGCTGTGCAAAATGGATAATGTGTGCACAACTA
AAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTGTTCACGGTGAGTGGCCATGGCAGGTGAC
TCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCAATGGATACTGACA
GCAGCTCATTGTTTCTCTGGGATAGAGACACCTAAAAAGCTGCGTGTCTACGGTGGCATTGTAA
ATCAATCAGAAATAAATGAAGGGACTGCTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCA
GTATACGACAGCAGAAAGTGGGTATGATATTGCCCTGTTAAAACTGGAATCAGCCATGAATTAC
ACAGATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGATAGAAACGCAGTGCACACAGAAT
GCTGGGTGACTGGATGGGGGTACACAGCACTAAGAGGTGAAGTACAAAGTACTCTTCAGAAAGC
CAAGGTTCCATTGGTGTCAAATGAAGAATGTCAGACAAGATACAGAAGACACAAAATAACCAAT
AAGATGATCTGTGCAGGCTACAAAGAAGGAGGGAAGGATACGTGCAAGGGAGATTCTGGAGGGC
CCCTGTCCTGCAAATACAATGGGGTCTGGCACTTGGTGGGCATCACAAGCTGGGGTGAAGGCTG
TGGTCAGAAGGAGAGACCGGGGGTCTACACGAACGTGGCCAAGTACGTGGACTGGATTCTGGAG
AAAACTCAAACAGTCTGAAAGAGTTCAACTGGTATCACTTTGTGGCCCTGGAAGATTATTCCAT
AGAAATGAGCTTGACGTCTCTGATGAAGACACTGGGATACTGACTCTTCCACTGTAACCAATTG
AATGGCCTTGATGTACGTAAGAACACCCAGAAAGAAAACTATTATTTTCAGAATTCCTGATCTG
GGAGAACCACTGGTTGTTTTCTGCATCCAGCTACTACTCAAGGAAACAAATACAGCAAGGAGAT
TTTAAAAATAAAAACACATCAGATATATAAGGAAAATATCAAGTAAGGGTGCTGTCTGCCTTTT
TAGTCTCTGTGACAAATACCTAAAGTAGTTCACAAAAGGAAAAATTTCTTTTGCACACCTTTCC
TCAGGTTTCAGCCTACGATCTGGTTGGCTGGCCCCATTGCTTTAGCCTGAGGTGAGGCAGAACC
ATATATCCATAGGAGGCTGTGGAGAAGGAGTCTGCTCAGTTCATGGTAGGCAGGAAGCAAATGG
AAACAGGAATGTATTGGGGACACGAATGGTCCTTCAAGAATATACTGTCAATCATTTACTTCTT
CCAGAGACATCCTGCTCCCTAACCTCCCTTTCCTTCCCAGATAACACCTCTGTCCTAGCTGGCC
CCAAGAGATCAGGTAGAAAGGCAGAGGAAACCATATAAAGAGTTGTTAAGTGCAAAATCAAAAC
CAGAAGGAATGCAGACAGGAGCTCAAAATGTCCATTTATAAGAATCTTTTTTTTTCTCTGCCTA
TATGAATCCCCCTCCTGTATAAAGGACTGACTCAATTCA

hide sequence

RefSeq Acc Id:

XM_011242172 ⟹ XP_011240474

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	45,693,696 - 45,706,148 (-)	NCBI
GRCm38	8	45,240,659 - 45,253,111 (-)	NCBI

Sequence:

show sequence

AGGACAGCGTCACAGAAATATTGCCAATGGTAAACATGACAGGCGCGATCTCTGGATATTCCTT
CAAGCAATGCCCTCAGCAATTAAGTACTTGCAGCAAAGATGTGTACGTGAACCTAGACATGAAG
GGCATGAACTATAACAGCTCTGTCGTGAAGAATGCTCGAGAATGCCAGGAGAGATGCACAGACG
ATGCCCACTGCCAGTTTTTCACATACGCAACAGGGTATTTTCCCAGTGTGGACCATCGGTGAGT
GAGCGGGAGTCCGAGCCGCTGGATATAAGCCTGCCCAGGGAAAGAAAACCGCTGGTTCCTAAAA
TGTGTCTTTTGAAGTACACCCGAACGGGGACGCCAACCACAATAACGAAGCTCAATGGCGTGGT
ATCTGGATTTTCACTGAAGTCCTGTGGACTTTCAAACTTGGCTTGTATCAGGGACATTTTCCCT
AACACGGTGCTGGCAGACCTTAACATTGACAGCGTGGTGGCCCCAGATGCTTTTGTCTGTCGTC
GCATCTGCACGCATCACCCCACTTGTTTGTTCTTCACATTCTTTTCCCAAGCATGGCCGAAAGA
ATCTCAGAGACATCTTTGTCTCCTTAAAACCTCTGAAAGTGGATTACCAAGCACACGCATTACA
AAGAGCCACGCCCTTTCGGGCTTCAGTCTCCAGCACTGCAGGCACAGTGTCCCAGTATTCTGCC
ATCCGTCCTTTTACAACGACACTGATTTCTTGGGAGAAGAGCTGGACATCGTCGATGTGAAAGG
CCAAGAAACCTGTCAGAAAACGTGTACCAATAACGCCCGCTGCCAGTTCTTTACCTACTATCCA
TCGCACAGACTGTGCAATGAGAGGAACCGCAGGGGCAGATGTTACCTAAAGCTTTCCTCCAATG
GATCTCCAACGAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACTCACTGAGGCTGTGCAA
AATGGATAATGTGTGCACAACTAAAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTGTTCAC
GGTGAGTGGCCATGGCAGGTGACTCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTCCATCA
TTGGAAACCAATGGATACTGACAGCAGCTCATTGTTTCTCTGGGATAGAGACACCTAAAAAGCT
GCGTGTCTACGGTGGCATTGTAAATCAATCAGAAATAAATGAAGGGACTGCTTTCTTCAGGGTT
CAAGAAATGATAATTCATGATCAGTATACGACAGCAGAAAGTGGGTATGATATTGCCCTGTTAA
AACTGGAATCAGCCATGAATTACACAGATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGA
TAGAAACGCAGTGCACACAGAATGCTGGGTGACTGGATGGGGGTACACAGCACTAAGAGGTGAA
GTACAAAGTACTCTTCAGAAAGCCAAGGTTCCATTGGTGTCAAATGAAGAATGTCAGACAAGAT
ACAGAAGACACAAAATAACCAATAAGATGATCTGTGCAGGCTACAAAGAAGGAGGGAAGGATAC
GTGCAAGGGAGATTCTGGAGGGCCCCTGTCCTGCAAATACAATGGGGTCTGGCACTTGGTGGGC
ATCACAAGCTGGGGTGAAGGCTGTGGTCAGAAGGAGAGACCGGGGGTCTACACGAACGTGGCCA
AGTACGTGGACTGGATTCTGGAGAAAACTCAAACAGTCTGAAAGAGTTCAACTGGTATCACTTT
GTGGCCCTGGAAGATTATTCCATAGAAATGAGCTTGACGTCTCTGATGAAGACACTGGGATACT
GACTCTTCCACTGTAACCAATTGAATGGCCTTGATGTACGTAAGAACACCCAGAAAGAAAACTA
TTATTTTCAGAATTCCTGATCTGGGAGAACCACTGGTTGTTTTCTGCATCCAGCTACTACTCAA
GGAAACAAATACAGCAAGGAGATTTTAAAAATAAAAACACATCAGATATATAAGGAAAATATCA
AGTAAGGGTGCTGTCTGCCTTTTTAGTCTCTGTGACAAATACCTAAAGTAGTTCACAAAAGGAA
AAATTTCTTTTGCACACCTTTCCTCAGGTTTCAGCCTACGATCTGGTTGGCTGGCCCCATTGCT
TTAGCCTGAGGTGAGGCAGAACCATATATCCATAGGAGGCTGTGGAGAAGGAGTCTGCTCAGTT
CATGGTAGGCAGGAAGCAAATGGAAACAGGAATGTATTGGGGACACGAATGGTCCTTCAAGAAT
ATACTGTCAATCATTTACTTCTTCCAGAGACATCCTGCTCCCTAACCTCCCTTTCCTTCCCAGA
TAACACCTCTGTCCTAGCTGGCCCCAAGAGATCAGGTAGAAAGGCAGAGGAAACCATATAAAGA
GTTGTTAAGTGCAAAATCAAAACCAGAAGGAATGCAGACAGGAGCTCAAAATGTCCATTTATAA
GAATCTTTTTTTTTCTCTGCCTATATGAATCCCCCTCCTGTATAAAGGACTGACTCAATTCA

hide sequence

RefSeq Acc Id:

XR_003947216

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	45,703,114 - 45,715,092 (-)	NCBI
GRCm38	8	45,250,077 - 45,262,055 (-)	NCBI

Sequence:

show sequence

TAAACATTTAAGCAACAGTGTTCCATACCGGCTCACGTAGAAAAAGGACAAGACTATAGGAAAG
AAAGCAAACACTCCGCCGAGGACTACAGCAAAGACAGAAAGTATCTGCAGGATGACCTCATTAC
ATCAGGTGTTATATTTTATCTTTTTTGCCTCAGTTTCTAGTGAATGCGTTACTAAGGTCTTCAA
AGACATCAGCTTTCAAGGAGGTGACCTGAGTACTGTTTTCACACCGAGCGCCACATACTGCCGC
TTGGTCTGCACTCACCACCCACGGTGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCGGATG
ATCCTACCAAATGGTTTGCCTGCATCCTGAAGGACAGCGTCACAGAAATATTGCCAATGGTAAA
CATGACAGGCGCGATCTCTGGATATTCCTTCAAGCAATGCCCTCAGCAATTAAGTACTTGCAGC
AAAGATGTGTACGTGAACCTAGACATGAAGGGCATGAACTATAACAGCTCTGTCGTGAAGAATG
CTCGAGAATGCCAGGAGAGATGCACAGACGATGCCCACTGCCAGTTTTTCACATACGCAACAGG
GTATTTTCCCAGTGTGGACCATCGGTGAGTGAGCGGGAGTCCGAGCCGCTGGATATAAGCCTGC
CCAGGGAAAGAAAACCGCTGGTTCCTAAAATGTGTCTTTTGAAGTACACCCGAACGGGGACGCC
AACCACAATAACGAAGCTCAATGGCGTGGTATCTGGATTTTCACTGAAGTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_082342	(Get FASTA)	NCBI Sequence Viewer
	XP_006509307	(Get FASTA)	NCBI Sequence Viewer
	XP_006509308	(Get FASTA)	NCBI Sequence Viewer
	XP_011240474	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH19485	(Get FASTA)	NCBI Sequence Viewer
	AAK40233	(Get FASTA)	NCBI Sequence Viewer
	BAB24114	(Get FASTA)	NCBI Sequence Viewer
	EDL35542	(Get FASTA)	NCBI Sequence Viewer
	EDL35543	(Get FASTA)	NCBI Sequence Viewer
	Q91Y47	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_082342 ⟸ NM_028066
- Peptide Label:	preproprotein
- UniProtKB:	Q91Y47 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTSLHQVLYFIFFASVSSECVTKVFKDISFQGGDLSTVFTPSATYCRLVCTHHPRCLLFTFMAE SSSDDPTKWFACILKDSVTEILPMVNMTGAISGYSFKQCPQQLSTCSKDVYVNLDMKGMNYNSS VVKNARECQERCTDDAHCQFFTYATGYFPSVDHRKMCLLKYTRTGTPTTITKLNGVVSGFSLKS CGLSNLACIRDIFPNTVLADLNIDSVVAPDAFVCRRICTHHPTCLFFTFFSQAWPKESQRHLCL LKTSESGLPSTRITKSHALSGFSLQHCRHSVPVFCHPSFYNDTDFLGEELDIVDVKGQETCQKT CTNNARCQFFTYYPSHRLCNERNRRGRCYLKLSSNGSPTRILHGRGGISGYSLRLCKMDNVCTT KINPRVVGGAASVHGEWPWQVTLHISQGHLCGGSIIGNQWILTAAHCFSGIETPKKLRVYGGIV NQSEINEGTAFFRVQEMIIHDQYTTAESGYDIALLKLESAMNYTDFQRPICLPSKGDRNAVHTE CWVTGWGYTALRGEVQSTLQKAKVPLVSNEECQTRYRRHKITNKMICAGYKEGGKDTCKGDSGG PLSCKYNGVWHLVGITSWGEGCGQKERPGVYTNVAKYVDWILEKTQTV hide sequence

RefSeq Acc Id:

XP_006509307 ⟸ XM_006509244

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAESSSDDPTKWFACILKDSVTEILPMVNMTGAISGYSFKQCPQQLSTCSKDVYVNLDMKGMNY
NSSVVKNARECQERCTDDAHCQFFTYATGYFPSVDHRKMCLLKYTRTGTPTTITKLNGVVSGFS
LKSCGLSNLACIRDIFPNTVLADLNIDSVVAPDAFVCRRICTHHPTCLFFTFFSQAWPKESQRH
LCLLKTSESGLPSTRITKSHALSGFSLQHCRHSVPVFCHPSFYNDTDFLGEELDIVDVKGQETC
QKTCTNNARCQFFTYYPSHRLCNERNRRGRCYLKLSSNGSPTRILHGRGGISGYSLRLCKMDNV
CTTKINPRVVGGAASVHGEWPWQVTLHISQGHLCGGSIIGNQWILTAAHCFSGIETPKKLRVYG
GIVNQSEINEGTAFFRVQEMIIHDQYTTAESGYDIALLKLESAMNYTDFQRPICLPSKGDRNAV
HTECWVTGWGYTALRGEVQSTLQKAKVPLVSNEECQTRYRRHKITNKMICAGYKEGGKDTCKGD
SGGPLSCKYNGVWHLVGITSWGEGCGQKERPGVYTNVAKYVDWILEKTQTV

hide sequence

RefSeq Acc Id:

XP_006509308 ⟸ XM_006509245

- Peptide Label:

isoform X2

- Sequence:

show sequence

MNRFACILKDSVTEILPMVNMTGAISGYSFKQCPQQLSTCSKDVYVNLDMKGMNYNSSVVKNAR
ECQERCTDDAHCQFFTYATGYFPSVDHRKMCLLKYTRTGTPTTITKLNGVVSGFSLKSCGLSNL
ACIRDIFPNTVLADLNIDSVVAPDAFVCRRICTHHPTCLFFTFFSQAWPKESQRHLCLLKTSES
GLPSTRITKSHALSGFSLQHCRHSVPVFCHPSFYNDTDFLGEELDIVDVKGQETCQKTCTNNAR
CQFFTYYPSHRLCNERNRRGRCYLKLSSNGSPTRILHGRGGISGYSLRLCKMDNVCTTKINPRV
VGGAASVHGEWPWQVTLHISQGHLCGGSIIGNQWILTAAHCFSGIETPKKLRVYGGIVNQSEIN
EGTAFFRVQEMIIHDQYTTAESGYDIALLKLESAMNYTDFQRPICLPSKGDRNAVHTECWVTGW
GYTALRGEVQSTLQKAKVPLVSNEECQTRYRRHKITNKMICAGYKEGGKDTCKGDSGGPLSCKY
NGVWHLVGITSWGEGCGQKERPGVYTNVAKYVDWILEKTQTV

hide sequence

RefSeq Acc Id:

XP_011240474 ⟸ XM_011242172

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPGEMHRRCPLPVFHIRNRVFSQCGPSVSERESEPLDISLPRERKPLVPKMCLLKYTRTGTPTT
ITKLNGVVSGFSLKSCGLSNLACIRDIFPNTVLADLNIDSVVAPDAFVCRRICTHHPTCLFFTF
FSQAWPKESQRHLCLLKTSESGLPSTRITKSHALSGFSLQHCRHSVPVFCHPSFYNDTDFLGEE
LDIVDVKGQETCQKTCTNNARCQFFTYYPSHRLCNERNRRGRCYLKLSSNGSPTRILHGRGGIS
GYSLRLCKMDNVCTTKINPRVVGGAASVHGEWPWQVTLHISQGHLCGGSIIGNQWILTAAHCFS
GIETPKKLRVYGGIVNQSEINEGTAFFRVQEMIIHDQYTTAESGYDIALLKLESAMNYTDFQRP
ICLPSKGDRNAVHTECWVTGWGYTALRGEVQSTLQKAKVPLVSNEECQTRYRRHKITNKMICAG
YKEGGKDTCKGDSGGPLSCKYNGVWHLVGITSWGEGCGQKERPGVYTNVAKYVDWILEKTQTV

hide sequence

RefSeq Acc Id:

ENSMUSP00000034064 ⟸ ENSMUST00000034064

Protein Domains

Apple Peptidase S1

Promoters

RGD ID:

8666985

Promoter ID:

EPDNEW_M11523

Type:

initiation region

Name:

F11_1

Description:

Mus musculus coagulation factor XI , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	45,261,986 - 45,262,046	EPDNEW

RGD ID:

6843110

Promoter ID:

MM_KWN:54294

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Liver

Transcripts:

NM_028066

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	46,347,111 - 46,347,611 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:99481	AgrOrtholog
Ensembl Genes	ENSMUSG00000031645	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000034064	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000034064	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000210622	ENTREZGENE
Gene3D-CATH	2.40.10.10	UniProtKB/Swiss-Prot
InterPro	Apple	UniProtKB/Swiss-Prot
	Pan_app	UniProtKB/Swiss-Prot
	Peptidase_S1_PA	UniProtKB/Swiss-Prot
	Peptidase_S1_PA_chymotrypsin	UniProtKB/Swiss-Prot
	Peptidase_S1A	UniProtKB/Swiss-Prot
	Trypsin_dom	UniProtKB/Swiss-Prot
	TRYPSIN_HIS	UniProtKB/Swiss-Prot
	TRYPSIN_SER	UniProtKB/Swiss-Prot
KEGG Report	mmu:109821	UniProtKB/Swiss-Prot
MGD	MGI:99481	ENTREZGENE
NCBI Gene	109821	ENTREZGENE
Pfam	PAN_1	UniProtKB/Swiss-Prot
	Trypsin	UniProtKB/Swiss-Prot
PhenoGen	F11	PhenoGen
PRINTS	APPLEDOMAIN	UniProtKB/Swiss-Prot
	CHYMOTRYPSIN	UniProtKB/Swiss-Prot
PROSITE	APPLE	UniProtKB/Swiss-Prot
	PAN	UniProtKB/Swiss-Prot
	TRYPSIN_DOM	UniProtKB/Swiss-Prot
	TRYPSIN_HIS	UniProtKB/Swiss-Prot
	TRYPSIN_SER	UniProtKB/Swiss-Prot
SMART	APPLE	UniProtKB/Swiss-Prot
	Tryp_SPc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50494	UniProtKB/Swiss-Prot
UniProt	FA11_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q9DAT3	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)