Lrfn5 (leucine rich repeat and fibronectin type III domain containing 5) - Rat Genome Database

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Gene: Lrfn5 (leucine rich repeat and fibronectin type III domain containing 5) Mus musculus
Analyze
Symbol: Lrfn5
Name: leucine rich repeat and fibronectin type III domain containing 5
RGD ID: 1319663
MGI Page MGI
Description: Involved in negative regulation of macrophage activation and regulation of presynapse assembly. Located in cell surface. Is active in GABA-ergic synapse and glutamatergic synapse. Is expressed in several structures, including central nervous system; dorsal root ganglion; and retina. Orthologous to human LRFN5 (leucine rich repeat and fibronectin type III domain containing 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI427653; AI604817; C130061B21; KIAA4208; leucine-rich repeat and fibronectin type-III domain-containing protein 5; mKIAA4208; Salm5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391261,569,356 - 61,913,554 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1261,569,936 - 61,905,128 (+)EnsemblGRCm39 Ensembl
GRCm381261,522,851 - 61,857,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1261,523,150 - 61,858,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371262,625,619 - 62,946,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361262,442,645 - 62,763,271 (+)NCBIMGSCv36mm8
Celera1262,712,498 - 63,024,396 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:16828986   PMID:17145500   PMID:18848646   PMID:20410109   PMID:21267068   PMID:21736948   PMID:21873635   PMID:25826454   PMID:27152329   PMID:27225731   PMID:27480238   PMID:34321999  
PMID:34879283   PMID:35132236  


Genomics

Comparative Map Data
Lrfn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391261,569,356 - 61,913,554 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1261,569,936 - 61,905,128 (+)EnsemblGRCm39 Ensembl
GRCm381261,522,851 - 61,857,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1261,523,150 - 61,858,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371262,625,619 - 62,946,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361262,442,645 - 62,763,271 (+)NCBIMGSCv36mm8
Celera1262,712,498 - 63,024,396 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.43NCBI
LRFN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381441,606,876 - 41,904,549 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1441,606,876 - 41,904,549 (+)EnsemblGRCh38hg38GRCh38
GRCh371442,076,079 - 42,373,752 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361441,147,090 - 41,443,499 (+)NCBINCBI36Build 36hg18NCBI36
Build 341441,147,093 - 41,443,498NCBI
Celera1421,937,439 - 22,234,297 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1422,187,067 - 22,483,854 (+)NCBIHuRef
CHM1_11442,014,900 - 42,311,898 (+)NCBICHM1_1
T2T-CHM13v2.01435,797,646 - 36,095,321 (+)NCBIT2T-CHM13v2.0
Lrfn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8685,201,465 - 85,557,872 (+)NCBIGRCr8
mRatBN7.2679,466,403 - 79,822,821 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl679,467,961 - 79,822,815 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx679,870,429 - 80,226,228 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0680,169,774 - 80,525,588 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0679,605,241 - 79,960,964 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0683,082,593 - 83,438,601 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl683,083,740 - 83,438,601 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0692,601,831 - 92,958,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4682,482,116 - 82,656,279 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1682,889,667 - 82,906,372 (+)NCBI
Celera678,123,282 - 78,474,424 (+)NCBICelera
Cytogenetic Map6q23NCBI
Lrfn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540919,710,305 - 19,856,123 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540919,710,527 - 19,969,984 (-)NCBIChiLan1.0ChiLan1.0
LRFN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21542,740,303 - 43,035,903 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11441,956,817 - 42,252,417 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01422,185,289 - 22,480,641 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11440,519,143 - 40,814,212 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1440,676,278 - 40,814,212 (+)Ensemblpanpan1.1panPan2
LRFN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1819,365,786 - 19,602,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl819,367,570 - 19,602,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha819,177,231 - 19,413,096 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0819,508,003 - 19,744,373 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl819,509,804 - 19,745,878 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1819,183,646 - 19,420,029 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0819,256,859 - 19,493,267 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0819,517,360 - 19,753,738 (+)NCBIUU_Cfam_GSD_1.0
Lrfn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864051,402,747 - 51,649,903 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649415,138,854 - 15,156,555 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649414,908,783 - 15,155,797 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRFN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1171,906,198 - 172,177,720 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11171,906,130 - 172,177,726 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21191,439,600 - 191,710,127 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRFN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12418,421,057 - 18,712,096 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2418,568,568 - 18,712,609 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660537,563,895 - 7,851,872 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrfn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481311,049,888 - 11,196,095 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481310,930,009 - 11,196,036 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrfn5
13334 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:400
Count of miRNA genes:305
Interacting mature miRNAs:338
Transcripts:ENSMUST00000055815, ENSMUST00000119481, ENSMUST00000130887, ENSMUST00000138980
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse

Markers in Region
RH118347  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381261,604,674 - 61,604,865UniSTSGRCm38
MGSCv371262,705,661 - 62,705,852UniSTSGRCm37
Celera1262,794,180 - 62,794,371UniSTS
Cytogenetic Map12C1UniSTS
Whitehead/MRC_RH12606.36UniSTS
AI604817  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12C1UniSTS
Whitehead/MRC_RH12594.0UniSTS
AI427653  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381261,524,352 - 61,524,460UniSTSGRCm38
MGSCv371262,625,339 - 62,625,447UniSTSGRCm37
Celera1262,712,218 - 62,712,326UniSTS
Cytogenetic Map12C1UniSTS
Whitehead/MRC_RH12604.42UniSTS
Lrfn5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381261,839,698 - 61,840,583UniSTSGRCm38
MGSCv371262,940,685 - 62,941,570UniSTSGRCm37
Celera1263,018,836 - 63,019,721UniSTS
Cytogenetic Map12C1UniSTS
cM Map12 UniSTS
PMC18818P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381261,552,918 - 61,553,148UniSTSGRCm38
MGSCv371262,653,905 - 62,654,135UniSTSGRCm37
Celera1262,740,688 - 62,740,900UniSTS
Cytogenetic Map12C1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000055815   ⟹   ENSMUSP00000051546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,570,734 - 61,892,044 (+)Ensembl
GRCm38.p6 Ensembl1261,523,948 - 61,845,258 (+)Ensembl
RefSeq Acc Id: ENSMUST00000119481   ⟹   ENSMUSP00000113123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,570,734 - 61,904,714 (+)Ensembl
GRCm38.p6 Ensembl1261,523,948 - 61,857,928 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,569,936 - 61,651,794 (+)Ensembl
GRCm38.p6 Ensembl1261,523,150 - 61,605,008 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138980
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,569,953 - 61,718,610 (+)Ensembl
GRCm38.p6 Ensembl1261,523,167 - 61,671,824 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,903,054 - 61,905,128 (+)Ensembl
GRCm38.p6 Ensembl1261,856,268 - 61,858,342 (+)Ensembl
RefSeq Acc Id: NM_001310586   ⟹   NP_001297515
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,569,953 - 61,904,714 (+)NCBI
GRCm381261,523,167 - 61,857,928 (+)NCBI
Sequence:
RefSeq Acc Id: NM_178714   ⟹   NP_848829
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,569,953 - 61,892,044 (+)NCBI
GRCm381261,523,167 - 61,845,258 (+)NCBI
MGSCv371262,625,619 - 62,946,245 (+)RGD
Celera1262,712,498 - 63,024,396 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515830   ⟹   XP_006515893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,569,356 - 61,892,218 (+)NCBI
GRCm381261,522,856 - 61,845,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515831   ⟹   XP_006515894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,569,356 - 61,892,218 (+)NCBI
GRCm381261,522,856 - 61,845,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315056   ⟹   XP_017170545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,569,356 - 61,913,554 (+)NCBI
GRCm381261,522,856 - 61,857,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157395   ⟹   XP_036013288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,569,356 - 61,913,554 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780450
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391261,569,356 - 61,913,554 (+)NCBI
GRCm381261,522,851 - 61,857,928 (+)NCBI
Sequence:
RefSeq Acc Id: NP_848829   ⟸   NM_178714
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8BXA0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515894   ⟸   XM_006515831
- Peptide Label: isoform X1
- UniProtKB: Q8BXA0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515893   ⟸   XM_006515830
- Peptide Label: isoform X1
- UniProtKB: Q8BXA0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001297515   ⟸   NM_001310586
- Peptide Label: isoform 2 precursor
- UniProtKB: Q8BJH4 (UniProtKB/Swiss-Prot),   Q5DTH4 (UniProtKB/Swiss-Prot),   Q8BZL0 (UniProtKB/Swiss-Prot),   Q8BXA0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170545   ⟸   XM_017315056
- Peptide Label: isoform X2
- UniProtKB: Q8BJH4 (UniProtKB/Swiss-Prot),   Q5DTH4 (UniProtKB/Swiss-Prot),   Q8BZL0 (UniProtKB/Swiss-Prot),   Q8BXA0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000113123   ⟸   ENSMUST00000119481
RefSeq Acc Id: ENSMUSP00000051546   ⟸   ENSMUST00000055815
RefSeq Acc Id: XP_036013288   ⟸   XM_036157395
- Peptide Label: isoform X2
- UniProtKB: Q8BXA0 (UniProtKB/Swiss-Prot),   Q8BJH4 (UniProtKB/Swiss-Prot),   Q5DTH4 (UniProtKB/Swiss-Prot),   Q8BZL0 (UniProtKB/Swiss-Prot)
Protein Domains
Fibronectin type-III   Ig-like   LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BXA0-F1-model_v2 AlphaFold Q8BXA0 1-719 view protein structure

Promoters
RGD ID:8678352
Promoter ID:EPDNEW_M17207
Type:initiation region
Name:Lrfn5_1
Description:Mus musculus leucine rich repeat and fibronectin type III domaincontaining 5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17208  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381261,523,143 - 61,523,203EPDNEW
RGD ID:8678354
Promoter ID:EPDNEW_M17208
Type:single initiation site
Name:Lrfn5_2
Description:Mus musculus leucine rich repeat and fibronectin type III domaincontaining 5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17207  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381261,787,882 - 61,787,942EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144814 AgrOrtholog
Ensembl Genes ENSMUSG00000035653 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000055815 ENTREZGENE
  ENSMUST00000055815.14 UniProtKB/Swiss-Prot
  ENSMUST00000119481 ENTREZGENE
  ENSMUST00000119481.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  3.80.10.10 UniProtKB/Swiss-Prot
InterPro FN3_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:238205 UniProtKB/Swiss-Prot
MGD MGI:2144814 ENTREZGENE
NCBI Gene 238205 ENTREZGENE
PANTHER PTHR45842:SF10 UniProtKB/Swiss-Prot
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/Swiss-Prot
Pfam I-set UniProtKB/Swiss-Prot
  LRR_8 UniProtKB/Swiss-Prot
PhenoGen Lrfn5 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
  LRR UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  LRR_TYP UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
  SSF48726 UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt LRFN5_MOUSE UniProtKB/Swiss-Prot
  Q5DTH4 ENTREZGENE
  Q8BJH4 ENTREZGENE
  Q8BXA0 ENTREZGENE
  Q8BZL0 ENTREZGENE
UniProt Secondary Q5DTH4 UniProtKB/Swiss-Prot
  Q8BJH4 UniProtKB/Swiss-Prot
  Q8BZL0 UniProtKB/Swiss-Prot