Rxylt1 (ribitol xylosyltransferase 1) - Rat Genome Database

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Gene: Rxylt1 (ribitol xylosyltransferase 1) Mus musculus
Analyze
Symbol: Rxylt1
Name: ribitol xylosyltransferase 1
RGD ID: 1319661
MGI Page MGI
Description: Predicted to enable ribitol beta-1,4-xylosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Located in Golgi apparatus. Is expressed in forelimb bud. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A10. Orthologous to human RXYLT1 (ribitol xylosyltransferase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6330415D21Rik; MGC103359; MGC28135; ribitol-5-phosphate xylosyltransferase 1; Tmem5; transmembrane protein 5; UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,916,844 - 121,933,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,914,019 - 121,933,276 (-)EnsemblGRCm39 Ensembl
GRCm3810122,080,939 - 122,097,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10122,078,114 - 122,097,371 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710121,518,316 - 121,534,158 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610121,484,320 - 121,500,162 (-)NCBIMGSCv36mm8
Celera10124,470,597 - 124,486,440 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1070.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA,IDA,ISO,ISS)
Golgi membrane  (IEA)
nucleoplasm  (IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:25279699   PMID:26238476   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Rxylt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,916,844 - 121,933,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,914,019 - 121,933,276 (-)EnsemblGRCm39 Ensembl
GRCm3810122,080,939 - 122,097,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10122,078,114 - 122,097,371 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710121,518,316 - 121,534,158 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610121,484,320 - 121,500,162 (-)NCBIMGSCv36mm8
Celera10124,470,597 - 124,486,440 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1070.25NCBI
RXYLT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381263,779,909 - 63,809,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1263,779,833 - 63,809,792 (+)EnsemblGRCh38hg38GRCh38
GRCh371264,173,689 - 64,203,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361262,459,904 - 62,489,154 (+)NCBINCBI36Build 36hg18NCBI36
Build 341262,459,903 - 62,489,154NCBI
Celera1263,838,644 - 63,867,894 (+)NCBICelera
Cytogenetic Map12q14.2NCBI
HuRef1261,224,906 - 61,255,033 (+)NCBIHuRef
CHM1_11264,141,305 - 64,171,061 (+)NCBICHM1_1
T2T-CHM13v2.01263,758,617 - 63,788,268 (+)NCBIT2T-CHM13v2.0
Rxylt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8759,656,274 - 59,668,140 (-)NCBIGRCr8
mRatBN7.2757,770,841 - 57,782,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl757,770,842 - 57,782,657 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx759,645,707 - 59,657,420 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0761,848,516 - 61,860,229 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0761,626,320 - 61,638,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0764,329,341 - 64,341,201 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl764,326,465 - 64,341,207 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0764,550,349 - 64,562,321 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4761,857,941 - 61,870,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1761,878,670 - 61,891,690 (-)NCBI
Celera754,952,923 - 54,964,657 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rxylt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545810,648,471 - 10,676,813 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545810,649,364 - 10,674,913 (+)NCBIChiLan1.0ChiLan1.0
RXYLT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21030,548,494 - 30,578,425 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11230,545,646 - 30,575,215 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01225,101,865 - 25,131,886 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11225,599,173 - 25,628,872 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,599,173 - 25,628,872 (-)Ensemblpanpan1.1panPan2
RXYLT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1106,630,076 - 6,648,387 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha106,553,497 - 6,577,756 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0106,726,796 - 6,751,359 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl106,726,698 - 6,751,356 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1106,593,145 - 6,617,573 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0106,851,038 - 6,875,466 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0106,982,457 - 7,006,893 (+)NCBIUU_Cfam_GSD_1.0
Rxylt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494551,862,233 - 51,883,897 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365452,226,232 - 2,247,976 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365452,226,238 - 2,247,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RXYLT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl528,247,412 - 28,276,273 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1528,247,409 - 28,276,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2531,433,526 - 31,462,220 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RXYLT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11159,468,720 - 59,498,425 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1159,468,714 - 59,500,249 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037186,308,517 - 186,338,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rxylt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248024,509,884 - 4,533,356 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248024,510,164 - 4,533,305 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rxylt1
619 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1291
Count of miRNA genes:699
Interacting mature miRNAs:867
Transcripts:ENSMUST00000038772, ENSMUST00000125506, ENSMUST00000129359, ENSMUST00000135083, ENSMUST00000140299, ENSMUST00000141057
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884377Skwq3_mskull length QTL 3, 5 week (mouse)10114635905122735905Mouse
26884383Bzwq3_mbi-zygomatic width QTL 3, 5 week (mouse)10114235905122735905Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1300796Lmr5_mleishmaniasis resistance 5 (mouse)Not determined10116220635122179828Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
27226795Scvln17_msacral vertebrae length 2, 16 week (mouse)10118435905124835905Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
27226791Feml8_mfemur length 8, 5 week (mouse)10119035905125735869Mouse
13506931Recrq11_mrecombination rate in male meiosis QTL 11 (mouse)10114335905123635905Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
27226784Tibl4_mtibia length 4, 5 week (mouse)10119035905125435869Mouse
26884443Sklq5_mskull length QTL 5, 5 week (mouse)10119035905124835905Mouse
27226718Tibw3_mtibia width 3, proximal, 10 week (mouse)10118835905125435869Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
11353838Gluq3_mblood glucose QTL 3 (mouse)10120243727125515907Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110035861125435869Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11353834Pcholq2_mplasma cholesterol QTL 2 (mouse)10120243727125515907Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
26884433Zlq2_mzygomatic length QTL 2, 5 week (mouse)10113535905125735869Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301701Aggr1_maggression 1 (mouse)Not determined10119506908125575232Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
27226747Metcl10_mmetatarsal-calcaneal length 10, 10 week (mouse)10119035905124835905Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
27226742Metcl4_mmetatarsal-calcaneal length 4, 5 week (mouse)10118135905125435869Mouse
27095926Pglq4_mpelvic girdle length QTL 4, 5 week (mouse)10119035905124835905Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
27226736Metcl15_mmetatarsal-calcaneal length 15, 16 week (mouse)10119035905124835905Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110453347125515907Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110453347125515907Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
27095906Scvln5_msacral vertebrae length 2, 5 week (mouse)10119035905124835905Mouse

Markers in Region
Tmed2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D2UniSTS
Cytogenetic Map5FUniSTS
cM Map563.65UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000038772   ⟹   ENSMUSP00000045258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,917,165 - 121,933,061 (-)Ensembl
GRCm38.p6 Ensembl10122,081,260 - 122,097,156 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,917,587 - 121,925,294 (-)Ensembl
GRCm38.p6 Ensembl10122,081,682 - 122,089,389 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,924,550 - 121,926,610 (-)Ensembl
GRCm38.p6 Ensembl10122,088,645 - 122,090,705 (-)Ensembl
Ensembl Acc Id: ENSMUST00000135083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,931,961 - 121,933,031 (-)Ensembl
GRCm38.p6 Ensembl10122,096,056 - 122,097,126 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140299   ⟹   ENSMUSP00000119308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,914,019 - 121,933,276 (-)Ensembl
GRCm38.p6 Ensembl10122,078,114 - 122,097,371 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,924,927 - 121,932,041 (-)Ensembl
GRCm38.p6 Ensembl10122,089,022 - 122,096,136 (-)Ensembl
RefSeq Acc Id: NM_001364706   ⟹   NP_001351635
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,916,844 - 121,933,075 (-)NCBI
GRCm3810122,080,939 - 122,097,170 (-)NCBI
Sequence:
RefSeq Acc Id: NM_153059   ⟹   NP_694699
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,916,844 - 121,933,075 (-)NCBI
GRCm3810122,080,939 - 122,097,170 (-)NCBI
MGSCv3710121,518,316 - 121,534,158 (-)RGD
Celera10124,470,597 - 124,486,440 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513556   ⟹   XP_006513619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,917,025 - 121,933,271 (-)NCBI
GRCm3810122,081,130 - 122,097,366 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313911   ⟹   XP_017169400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,917,025 - 121,932,366 (-)NCBI
GRCm3810122,081,120 - 122,096,873 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245043   ⟹   XP_030100903
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,917,025 - 121,933,095 (-)NCBI
GRCm3810122,081,120 - 122,097,126 (-)NCBI
Sequence:
RefSeq Acc Id: NP_694699   ⟸   NM_153059
- Peptide Label: isoform 1
- UniProtKB: Q8R566 (UniProtKB/Swiss-Prot),   Q8VDX6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513619   ⟸   XM_006513556
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017169400   ⟸   XM_017313911
- Peptide Label: isoform X2
- UniProtKB: Q8BVJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001351635   ⟸   NM_001364706
- Peptide Label: isoform 2
- UniProtKB: Q8BVJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030100903   ⟸   XM_030245043
- Peptide Label: isoform X2
- UniProtKB: Q8BVJ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000119308   ⟸   ENSMUST00000140299
Ensembl Acc Id: ENSMUSP00000045258   ⟸   ENSMUST00000038772

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VDX6-F1-model_v2 AlphaFold Q8VDX6 1-444 view protein structure

Promoters
RGD ID:6820034
Promoter ID:MM_KWN:5812
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6
Transcripts:OTTMUST00000068602
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610121,533,571 - 121,534,071 (-)MPROMDB
RGD ID:6820035
Promoter ID:MM_KWN:5813
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000092131,   OTTMUST00000068598,   OTTMUST00000068599,   OTTMUST00000068600
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610121,533,929 - 121,534,429 (-)MPROMDB
RGD ID:8673414
Promoter ID:EPDNEW_M14737
Type:initiation region
Name:Tmem5_1
Description:Mus musculus transmembrane protein 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810122,097,170 - 122,097,230EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384919 AgrOrtholog
Ensembl Genes ENSMUSG00000034620 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038772.13 UniProtKB/TrEMBL
  ENSMUST00000140299 ENTREZGENE
  ENSMUST00000140299.3 UniProtKB/Swiss-Prot
KEGG Report mmu:216395 UniProtKB/Swiss-Prot
MGD MGI:2384919 ENTREZGENE
NCBI Gene 216395 ENTREZGENE
PANTHER RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 UniProtKB/Swiss-Prot
  RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 UniProtKB/Swiss-Prot
  RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 UniProtKB/TrEMBL
  RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 UniProtKB/TrEMBL
PhenoGen Rxylt1 PhenoGen
UniProt Q5XK09_MOUSE UniProtKB/TrEMBL
  Q8BVJ1 ENTREZGENE, UniProtKB/TrEMBL
  Q8R566 ENTREZGENE
  Q8VDX6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8R566 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-09-04 Rxylt1  ribitol xylosyltransferase 1  Tmem5  transmembrane protein 5  Symbol and/or name change 5135510 APPROVED