Slc7a11 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 11) - Rat Genome Database

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Gene: Slc7a11 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 11) Mus musculus
Analyze
Symbol: Slc7a11
Name: solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
RGD ID: 1319532
MGI Page MGI
Description: Predicted to enable L-amino acid transmembrane transporter activity. Acts upstream of or within several processes, including oligopeptide transmembrane transport; regulation of cellular amino acid metabolic process; and regulation of protein localization. Located in apical part of cell; astrocyte projection; and brush border membrane. Is expressed in brain; meninges; and sensory organ. Used to study Hermansky-Pudlak syndrome and platelet storage pool deficiency. Orthologous to human SLC7A11 (solute carrier family 7 member 11).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9930009M05Rik; AI451155; amino acid transport system xc-; cysteine/glutamate transporter; cystine/glutamate transporter; sodium independent anionic amino acid transport system; solute carrier family 7 member 11; su; sut; xCT
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39350,319,385 - 50,403,947 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl349,846,975 - 50,398,063 (-)EnsemblGRCm39 Ensembl
GRCm38350,364,936 - 50,499,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl349,892,526 - 50,443,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37350,168,858 - 50,247,535 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36350,461,131 - 50,539,808 (-)NCBIMGSCv36mm8
Celera350,149,206 - 50,227,932 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map321.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-alpha-phellandrene  (ISO)
(-)-demecolcine  (ISO)
(E)-thiamethoxam  (EXP)
(R)-lipoic acid  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
(S)-AMPA  (ISO)
1,3-benzothiazole-2-thiol  (ISO)
1-phenyl-1-cyclopentanecarboxylic acid 2-[2-(diethylamino)ethoxy]ethyl ester  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-(chloromethyl)pyridine  (ISO)
2-butoxyethanol  (EXP)
2-tert-butylhydroquinone  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-methyl-3H-imidazo[4,5-f]quinolin-2-amine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-methylene-bis-(2-chloroaniline)  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-aminosalicylic acid  (ISO)
4-Carboxyphenylglycine  (ISO)
4-hydroxynon-2-enal  (EXP,ISO)
4-nitro-1,2-phenylenediamine  (ISO)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (ISO)
7beta-aminocephalosporanic acid  (ISO)
8-Br-cAMP  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
acyclovir  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
alpha-pinene  (ISO)
alpidem  (ISO)
amikacin  (ISO)
ammonium hexachloroplatinate  (ISO)
amphetamine  (ISO)
ampicillin  (ISO)
andrographolide  (EXP)
arachidonic acid  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
Augmentin  (ISO)
Azaspiracid  (ISO)
azathioprine  (ISO)
belinostat  (ISO)
benzalkonium chloride  (ISO)
benzene  (EXP,ISO)
benzidine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bicalutamide  (ISO)
bilirubin IXalpha  (ISO)
biperiden  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bromfenac  (ISO)
bromobenzene  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (EXP,ISO)
captan  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
ceftriaxone  (ISO)
celastrol  (ISO)
celecoxib  (ISO)
chlordecone  (EXP)
chloroacetaldehyde  (ISO)
chloropicrin  (ISO)
chloroprene  (EXP)
chloroquine  (EXP)
chlorpyrifos  (EXP,ISO)
choline  (EXP)
cisplatin  (EXP,ISO)
clavulanic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumaphos  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
curcumin  (EXP,ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (ISO)
DDT  (ISO)
deoxynivalenol  (ISO)
desferrioxamine B  (EXP,ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dichloromethane  (ISO)
diclofenac  (ISO)
dieldrin  (EXP)
diethyl maleate  (EXP,ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
diphenhydramine  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
doramapimod  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
elesclomol  (ISO)
endosulfan  (ISO)
enniatin  (ISO)
entacapone  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epichlorohydrin  (ISO)
erastin  (ISO)
estriol  (ISO)
estrone  (ISO)
ethambutol  (ISO)
ethanol  (EXP,ISO)
Ethyl acrylate  (ISO)
ethyl methanesulfonate  (ISO)
ethylbenzene  (ISO)
etoposide  (ISO)
eugenol  (ISO)
farnesol  (ISO)
ferrostatin-1  (EXP,ISO)
Fexofenadine hydrochloride  (ISO)
fludrocortisone  (ISO)
fluoranthene  (EXP)
fluoxetine  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
formaldehyde  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gedunin  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
glutathione  (EXP,ISO)
glycidol  (ISO)
hexamethylene diisocyanate  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hypochlorous acid  (EXP)
ibuprofen  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
ketoconazole  (ISO)
L-ascorbic acid  (ISO)
L-cystine  (EXP,ISO)
L-methionine  (EXP)
lead diacetate  (EXP,ISO)
leflunomide  (ISO)
levofloxacin  (ISO)
lipoic acid  (ISO)
lipopolysaccharide  (EXP)
lumiracoxib  (ISO)
malonaldehyde  (ISO)
manganese(II) chloride  (ISO)
mebendazole  (ISO)
MeIQx  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methotrexate  (ISO)
methyl methacrylate  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (EXP)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
motexafin gadolinium  (ISO)
mycophenolic acid  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (ISO)
naphthalene-1,2-diol  (ISO)
nevirapine  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
nitrofen  (ISO)
Nonylphenol  (ISO)
O-methyleugenol  (ISO)
o-xylene  (ISO)
ochratoxin A  (ISO)
oseltamivir  (ISO)
oxybenzone  (ISO)
ozone  (EXP,ISO)
p-anisidine  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
para-Cresidine  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
penbutolol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenol  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pioglitazone  (ISO)
piroxicam  (ISO)
potassium bromate  (ISO)
potassium dichromate  (EXP)
prednisolone  (ISO)
procyclidine  (ISO)
progesterone  (ISO)
propofol  (ISO)
protriptyline  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
reactive oxygen species  (EXP)
resorcinol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 203580  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium aurothiomalate  (ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
succimer  (EXP,ISO)
sulfasalazine  (EXP,ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
tetrathiomolybdate(2-)  (ISO)
thapsigargin  (ISO)
thiamethoxam  (EXP)
thioacetamide  (ISO)
thiram  (ISO)
tienilic acid  (ISO)
titanium dioxide  (EXP,ISO)
tolcapone  (ISO)
toluene  (ISO)
trazodone  (ISO)
triacsin C  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
Trihexyphenidyl  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (EXP,ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vanillin  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zafirlukast  (ISO)
zearalenone  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
ziram  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Prognostic significance of amino-acid transporter expression (LAT1, ASCT2, and xCT) in surgically resected tongue cancer. Toyoda M, etal., Br J Cancer. 2014 May 13;110(10):2506-13. doi: 10.1038/bjc.2014.178. Epub 2014 Apr 24.
Additional References at PubMed
PMID:8699821   PMID:8889548   PMID:9585243   PMID:9714600   PMID:10206947   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11136724   PMID:11217851   PMID:11592818   PMID:12235164  
PMID:12477932   PMID:15009730   PMID:15522208   PMID:16037214   PMID:16141072   PMID:16141073   PMID:16144837   PMID:16399997   PMID:16554485   PMID:17035536   PMID:17200146   PMID:17963724  
PMID:18395005   PMID:18621028   PMID:18622736   PMID:19015640   PMID:19017641   PMID:19374900   PMID:19521566   PMID:19576933   PMID:19695216   PMID:19715555   PMID:20053169   PMID:20308543  
PMID:20463017   PMID:20717926   PMID:21191088   PMID:21267068   PMID:21302293   PMID:21325781   PMID:21397861   PMID:21490221   PMID:21677750   PMID:21873635   PMID:22056639   PMID:22095285  
PMID:22220511   PMID:22394266   PMID:23085521   PMID:23592778   PMID:23848514   PMID:24548853   PMID:25036707   PMID:25384799   PMID:25429150   PMID:25619129   PMID:25799988   PMID:26071560  
PMID:26469940   PMID:26494316   PMID:26553727   PMID:26601945   PMID:27080807   PMID:27129162   PMID:27247047   PMID:27626380   PMID:27801527   PMID:28086920   PMID:28630042   PMID:28882088  
PMID:28985506   PMID:29024663   PMID:29079265   PMID:29167447   PMID:29350434   PMID:29458149   PMID:29693305   PMID:29761734   PMID:30279737   PMID:31000598   PMID:31022385   PMID:31071489  
PMID:31101857   PMID:31396687   PMID:31474565   PMID:32241947   PMID:32374849   PMID:32554809   PMID:32587657   PMID:32601262   PMID:32677810   PMID:32768484   PMID:33199267   PMID:33665549  
PMID:34108554   PMID:34206421   PMID:34259984   PMID:34649350   PMID:34747522   PMID:35147267   PMID:35239019   PMID:35271999   PMID:35398053   PMID:35579738   PMID:35588615   PMID:35614212  
PMID:35721711  


Genomics

Comparative Map Data
Slc7a11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39350,319,385 - 50,403,947 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl349,846,975 - 50,398,063 (-)EnsemblGRCm39 Ensembl
GRCm38350,364,936 - 50,499,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl349,892,526 - 50,443,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37350,168,858 - 50,247,535 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36350,461,131 - 50,539,808 (-)NCBIMGSCv36mm8
Celera350,149,206 - 50,227,932 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map321.72NCBI
SLC7A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384138,164,097 - 138,312,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4138,164,097 - 138,242,349 (-)EnsemblGRCh38hg38GRCh38
GRCh374139,085,251 - 139,163,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364139,304,698 - 139,382,953 (-)NCBINCBI36Build 36hg18NCBI36
Build 344139,449,092 - 139,520,828NCBI
Celera4136,424,509 - 136,502,906 (-)NCBICelera
Cytogenetic Map4q28.3NCBI
HuRef4134,820,291 - 134,898,999 (-)NCBIHuRef
CHM1_14139,061,708 - 139,139,961 (-)NCBICHM1_1
T2T-CHM13v2.04141,487,564 - 141,565,813 (-)NCBIT2T-CHM13v2.0
Slc7a11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22134,382,002 - 134,517,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2133,963,107 - 134,517,536 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02139,453,774 - 139,528,479 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2139,453,774 - 139,528,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02158,930,294 - 159,004,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42139,241,142 - 139,317,101 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12139,198,359 - 139,266,947 (-)NCBI
Celera2128,949,395 - 129,023,474 (-)NCBICelera
Cytogenetic Map2q26NCBI
Slc7a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554285,237,865 - 5,309,085 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554285,238,460 - 5,309,085 (+)NCBIChiLan1.0ChiLan1.0
SLC7A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14141,841,526 - 141,919,678 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4141,849,343 - 141,959,849 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04130,529,677 - 130,601,396 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC7A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1194,289,792 - 4,379,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl194,289,850 - 4,389,048 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha194,539,704 - 4,608,064 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0194,364,717 - 4,454,499 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl194,264,457 - 4,464,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1194,293,544 - 4,361,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0194,655,537 - 4,724,650 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0195,019,875 - 5,088,260 (+)NCBIUU_Cfam_GSD_1.0
Slc7a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530151,740,115 - 51,806,268 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365359,177,305 - 9,242,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl888,608,174 - 88,687,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1888,608,083 - 88,690,589 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC7A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1785,149,810 - 85,225,061 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl785,154,068 - 85,225,144 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603764,647,689 - 64,726,569 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc7a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477718,546,799 - 18,619,947 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477718,540,006 - 18,619,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
BB453999  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38350,366,251 - 50,366,354UniSTSGRCm38
MGSCv37350,170,173 - 50,170,276UniSTSGRCm37
Celera350,150,492 - 50,150,595UniSTS
Cytogenetic Map3DUniSTS
cM Map316.4UniSTS
Whitehead/MRC_RH3451.74UniSTS
26.MMHAP20FRA11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38350,431,124 - 50,431,316UniSTSGRCm38
MGSCv37350,235,046 - 50,235,238UniSTSGRCm37
Celera350,215,431 - 50,215,623UniSTS
Cytogenetic Map3DUniSTS
cM Map316.4UniSTS
Whitehead_YAC3 UniSTS
44.MMHAP7FLG5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38350,401,924 - 50,402,098UniSTSGRCm38
MGSCv37350,205,846 - 50,206,020UniSTSGRCm37
Celera350,186,193 - 50,186,367UniSTS
Cytogenetic Map3DUniSTS
cM Map316.4UniSTS
Whitehead_YAC3 UniSTS
AI451155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38350,365,216 - 50,365,394UniSTSGRCm38
MGSCv37350,169,138 - 50,169,316UniSTSGRCm37
Celera350,149,486 - 50,149,664UniSTS
Cytogenetic Map3DUniSTS
cM Map316.4UniSTS
Whitehead/MRC_RH3449.01UniSTS
UniSTS:234670  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38350,367,275 - 50,367,477UniSTSGRCm38
MGSCv37350,171,197 - 50,171,399UniSTSGRCm37
Celera350,151,516 - 50,151,718UniSTS
Cytogenetic Map3DUniSTS
cM Map316.4UniSTS
px-72g5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map8B1.2UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map3BUniSTS
cM Map1354.0UniSTS
cM Map91.0UniSTS
cM Map316.4UniSTS
px-45f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map9E3.1UniSTS
cM Map316.4UniSTS
cM Map1354.0UniSTS
px-24g4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map3F2.3UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map17CUniSTS
cM Map91.0UniSTS
cM Map316.4UniSTS
cM Map1740.0UniSTS
cM Map1354.0UniSTS
Slc7a11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3DUniSTS
cM Map321.72UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34395443565307421Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
13801030Tpcq1_mtotal plasma cholesterol QTL 1 (mouse)35025444952207421Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir26bmmu-miR-26b-5pOncomiRDBexternal_infoNANA21510944

Predicted Target Of
Summary Value
Count of predictions:2966
Count of miRNA genes:879
Interacting mature miRNAs:1260
Transcripts:ENSMUST00000029297, ENSMUST00000142932
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB022345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB037661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC101992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY766236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY766237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB630675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB904251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB918642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB925811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB942599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC961660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC976051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC983220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HD000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029297   ⟹   ENSMUSP00000029297
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl350,319,387 - 50,398,060 (-)Ensembl
GRCm38.p6 Ensembl350,364,938 - 50,443,611 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142932
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl350,370,419 - 50,398,063 (-)Ensembl
GRCm38.p6 Ensembl350,415,970 - 50,443,614 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl350,324,298 - 50,325,248 (-)Ensembl
GRCm38.p6 Ensembl350,369,849 - 50,370,799 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193838
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl350,395,378 - 50,398,054 (-)Ensembl
GRCm38.p6 Ensembl350,440,929 - 50,443,605 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194462   ⟹   ENSMUSP00000141988
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl349,846,975 - 50,398,063 (-)Ensembl
GRCm38.p6 Ensembl349,892,526 - 50,443,614 (-)Ensembl
RefSeq Acc Id: NM_011990   ⟹   NP_036120
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39350,319,385 - 50,398,062 (-)NCBI
GRCm38350,364,936 - 50,443,613 (-)NCBI
MGSCv37350,168,858 - 50,247,535 (-)RGD
Celera350,149,206 - 50,227,932 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500776   ⟹   XP_006500839
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39350,319,385 - 50,398,182 (-)NCBI
GRCm38350,364,936 - 50,443,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500777   ⟹   XP_006500840
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39350,319,385 - 50,403,947 (-)NCBI
GRCm38350,364,936 - 50,449,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319590   ⟹   XP_017175079
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39350,319,385 - 50,403,904 (-)NCBI
GRCm38350,364,936 - 50,449,486 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036120   ⟸   NM_011990
- UniProtKB: Q9WTR6 (UniProtKB/Swiss-Prot),   Q542C8 (UniProtKB/TrEMBL),   A0A8C6H6E8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500840   ⟸   XM_006500777
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006500839   ⟸   XM_006500776
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017175079   ⟸   XM_017319590
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000029297   ⟸   ENSMUST00000029297
RefSeq Acc Id: ENSMUSP00000141988   ⟸   ENSMUST00000194462

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WTR6-F1-model_v2 AlphaFold Q9WTR6 1-502 view protein structure

Promoters
RGD ID:6834477
Promoter ID:MM_KWN:34254
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   MEF_B4
Transcripts:NM_011990,   OTTMUST00000050385
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36350,247,166 - 50,247,666 (-)MPROMDB
RGD ID:6880596
Promoter ID:EPDNEW_M3748
Type:initiation region
Name:Slc7a11_1
Description:Mus musculus solute carrier family 7 (cationic amino acid transporter,y+ system), member 11 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38350,443,586 - 50,443,646EPDNEW
RGD ID:6880592
Promoter ID:EPDNEW_M3747
Type:initiation region
Name:AK089283_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38350,443,586 - 50,443,646EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347355 AgrOrtholog
Ensembl Genes ENSMUSG00000027737 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000029297 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141988.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029297 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000194462.6 UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L_AA_transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26570 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1347355 ENTREZGENE
NCBI Gene 26570 ENTREZGENE
Pfam AA_permease_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB SLC7A11 RGD
PhenoGen Slc7a11 PhenoGen
TIGRFAMs 2A0308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0B4J1P7_MOUSE UniProtKB/TrEMBL
  A0A8C6H6E8 ENTREZGENE
  Q3TN05_MOUSE UniProtKB/TrEMBL
  Q542C8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BYV9_MOUSE UniProtKB/TrEMBL
  Q9WTR6 ENTREZGENE, UniProtKB/Swiss-Prot