Rnmt (RNA (guanine-7-) methyltransferase) - Rat Genome Database

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Gene: Rnmt (RNA (guanine-7-) methyltransferase) Mus musculus
Analyze
Symbol: Rnmt
Name: RNA (guanine-7-) methyltransferase
RGD ID: 1319474
MGI Page MGI
Description: Predicted to enable RNA binding activity and mRNA 5'-cap (guanine-N7-)-methyltransferase activity. Acts upstream of or within cellular response to leukemia inhibitory factor. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be part of mRNA capping enzyme complex and receptor complex. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and skin. Orthologous to human RNMT (RNA guanine-7 methyltransferase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610002P10Rik; AI848273; mKIAA0398; mRNA (guanine-N(7)-)-methyltransferase; mRNA cap guanine-N7 methyltransferase; mRNA cap methyltransferase; Rg7mt1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391868,433,406 - 68,457,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1868,433,426 - 68,457,923 (+)EnsemblGRCm39 Ensembl
GRCm381868,300,233 - 68,324,852 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1868,300,355 - 68,324,852 (+)EnsemblGRCm38mm10GRCm38
MGSCv371868,460,009 - 68,484,506 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361868,425,758 - 68,449,176 (+)NCBIMGSCv36mm8
Celera1869,608,344 - 69,632,813 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1841.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
calcium silicate  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
hexamethylene diisocyanate  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phorone  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships. Bujnicki JM, etal., BMC Bioinformatics 2001;2(1):2. Epub 2001 Jun 22.
2. Cap-binding complex (CBC). Gonatopoulos-Pournatzis T and Cowling VH, Biochem J. 2014 Jan 15;457(2):231-42. doi: 10.1042/BJ20131214.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15345747   PMID:15489334  
PMID:15582152   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693   PMID:20439489   PMID:21267068   PMID:21873635   PMID:23382219   PMID:23604909   PMID:24194600  
PMID:26370502   PMID:30333137   PMID:32325033   PMID:34125914   PMID:35652653   PMID:37839992  


Genomics

Comparative Map Data
Rnmt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391868,433,406 - 68,457,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1868,433,426 - 68,457,923 (+)EnsemblGRCm39 Ensembl
GRCm381868,300,233 - 68,324,852 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1868,300,355 - 68,324,852 (+)EnsemblGRCm38mm10GRCm38
MGSCv371868,460,009 - 68,484,506 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361868,425,758 - 68,449,176 (+)NCBIMGSCv36mm8
Celera1869,608,344 - 69,632,813 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1841.22NCBI
RNMT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381813,726,673 - 13,764,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1813,726,660 - 13,764,556 (+)EnsemblGRCh38hg38GRCh38
GRCh371813,726,672 - 13,764,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361813,716,704 - 13,754,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 341813,716,703 - 13,754,554NCBI
Celera1813,607,632 - 13,645,479 (+)NCBICelera
Cytogenetic Map18p11.21NCBI
HuRef1813,679,859 - 13,717,670 (+)NCBIHuRef
CHM1_11813,725,873 - 13,763,691 (+)NCBICHM1_1
T2T-CHM13v2.01813,888,989 - 13,926,829 (+)NCBIT2T-CHM13v2.0
Rnmt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81864,156,067 - 64,179,601 (+)NCBIGRCr8
mRatBN7.21861,886,230 - 61,909,775 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1861,886,292 - 61,909,775 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1863,961,362 - 63,981,902 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01864,666,230 - 64,686,778 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01862,510,870 - 62,531,418 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01864,084,746 - 64,108,246 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1864,084,795 - 64,108,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01863,299,050 - 63,322,520 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41864,690,985 - 64,711,525 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11864,761,274 - 64,784,726 (-)NCBI
Celera1859,989,085 - 60,009,626 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Rnmt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955402319,520 - 344,129 (-)NCBIChiLan1.0ChiLan1.0
RNMT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21724,281,576 - 24,319,041 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,974,172 - 10,011,637 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018560,744 - 598,216 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1182,729,921 - 2,767,279 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl182,729,921 - 2,767,279 (-)Ensemblpanpan1.1panPan2
RNMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,465,634 - 24,499,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,430,063 - 24,497,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,446,631 - 25,480,524 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,363,987 - 24,396,596 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,363,993 - 24,396,571 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,417,579 - 24,451,427 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,303,977 - 24,338,110 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,576,836 - 24,610,980 (-)NCBIUU_Cfam_GSD_1.0
Rnmt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049443,902,854 - 3,927,936 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366263,132,772 - 3,153,920 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366263,132,781 - 3,156,252 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNMT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl696,338,288 - 96,360,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1696,338,283 - 96,362,814 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2689,650,724 - 89,664,128 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNMT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11872,203,405 - 72,242,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1872,208,648 - 72,243,940 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,270,863 - 47,311,302 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnmt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477020,312,555 - 20,389,099 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnmt
895 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1856
Count of miRNA genes:733
Interacting mature miRNAs:967
Transcripts:ENSMUST00000009679, ENSMUST00000025427, ENSMUST00000129849, ENSMUST00000131075, ENSMUST00000139111, ENSMUST00000139554, ENSMUST00000148937, ENSMUST00000151833
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
11039518Ltpr8_mLeishmania tropica response 8 (mouse)186387490376180241Mouse
12798542Ett1_mexperimentally induced testicular teratoma 1 (mouse)186667414968668468Mouse
1301798Hdlq31_mHDL QTL 31 (mouse)Not determined186714438990720763Mouse

Markers in Region
AI848273  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381868,324,583 - 68,324,675UniSTSGRCm38
MGSCv371868,484,237 - 68,484,329UniSTSGRCm37
Celera1869,632,544 - 69,632,636UniSTS
Cytogenetic Map18E1UniSTS
Whitehead/MRC_RH18853.74UniSTS
UniSTS:237826  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381868,324,058 - 68,324,288UniSTSGRCm38
MGSCv371868,483,712 - 68,483,942UniSTSGRCm37
Celera1869,632,019 - 69,632,249UniSTS
Cytogenetic Map18E1UniSTS
UniSTS:237836  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381868,314,744 - 68,314,959UniSTSGRCm38
MGSCv371868,474,398 - 68,474,613UniSTSGRCm37
Celera1869,622,734 - 69,622,949UniSTS
Cytogenetic Map18E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO039099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000009679   ⟹   ENSMUSP00000009679
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,433,426 - 68,457,923 (+)Ensembl
GRCm38.p6 Ensembl1868,300,355 - 68,324,852 (+)Ensembl
RefSeq Acc Id: ENSMUST00000025427   ⟹   ENSMUSP00000025427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,433,471 - 68,454,977 (+)Ensembl
GRCm38.p6 Ensembl1868,300,400 - 68,321,906 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129849   ⟹   ENSMUSP00000117459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,438,068 - 68,439,265 (+)Ensembl
GRCm38.p6 Ensembl1868,304,997 - 68,306,194 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131075   ⟹   ENSMUSP00000122741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,433,463 - 68,442,488 (+)Ensembl
GRCm38.p6 Ensembl1868,300,392 - 68,309,417 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139111   ⟹   ENSMUSP00000123500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,433,493 - 68,444,753 (+)Ensembl
GRCm38.p6 Ensembl1868,300,422 - 68,311,682 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139554
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,450,562 - 68,452,315 (+)Ensembl
GRCm38.p6 Ensembl1868,317,491 - 68,319,244 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,452,068 - 68,457,922 (+)Ensembl
GRCm38.p6 Ensembl1868,318,997 - 68,324,851 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1868,433,469 - 68,448,521 (+)Ensembl
GRCm38.p6 Ensembl1868,300,398 - 68,315,450 (+)Ensembl
RefSeq Acc Id: NM_001170953   ⟹   NP_001164424
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,433,426 - 68,457,923 (+)NCBI
GRCm381868,300,355 - 68,324,852 (+)NCBI
MGSCv371868,460,009 - 68,484,506 (+)RGD
Celera1869,608,344 - 69,632,813 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001361002   ⟹   NP_001347931
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,433,491 - 68,457,923 (+)NCBI
GRCm381868,300,420 - 68,324,852 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361003   ⟹   NP_001347932
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,433,491 - 68,457,923 (+)NCBI
GRCm381868,300,420 - 68,324,852 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026440   ⟹   NP_080716
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,433,426 - 68,457,923 (+)NCBI
GRCm381868,300,355 - 68,324,852 (+)NCBI
MGSCv371868,460,009 - 68,484,506 (+)RGD
Celera1869,608,344 - 69,632,813 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526193   ⟹   XP_006526256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,433,439 - 68,454,978 (+)NCBI
GRCm381868,300,363 - 68,324,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526197   ⟹   XP_006526260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,436,676 - 68,454,980 (+)NCBI
GRCm381868,303,605 - 68,324,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246991   ⟹   XP_011245293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,433,419 - 68,454,978 (+)NCBI
GRCm381868,300,335 - 68,324,852 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004939884
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391868,433,406 - 68,457,923 (+)NCBI
Sequence:
RefSeq Acc Id: NP_080716   ⟸   NM_026440
- Peptide Label: isoform 1
- UniProtKB: Q6ZQC6 (UniProtKB/Swiss-Prot),   Q3V3U9 (UniProtKB/Swiss-Prot),   Q9D5F1 (UniProtKB/Swiss-Prot),   Q9D0L8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001164424   ⟸   NM_001170953
- Peptide Label: isoform 2
- UniProtKB: Q9D0L8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526256   ⟸   XM_006526193
- Peptide Label: isoform X1
- UniProtKB: Q6ZQC6 (UniProtKB/Swiss-Prot),   Q3V3U9 (UniProtKB/Swiss-Prot),   Q9D5F1 (UniProtKB/Swiss-Prot),   Q9D0L8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526260   ⟸   XM_006526197
- Peptide Label: isoform X1
- UniProtKB: Q6ZQC6 (UniProtKB/Swiss-Prot),   Q3V3U9 (UniProtKB/Swiss-Prot),   Q9D5F1 (UniProtKB/Swiss-Prot),   Q9D0L8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245293   ⟸   XM_011246991
- Peptide Label: isoform X1
- UniProtKB: Q6ZQC6 (UniProtKB/Swiss-Prot),   Q3V3U9 (UniProtKB/Swiss-Prot),   Q9D5F1 (UniProtKB/Swiss-Prot),   Q9D0L8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001347931   ⟸   NM_001361002
- Peptide Label: isoform 1
- UniProtKB: Q9D0L8 (UniProtKB/Swiss-Prot),   Q6ZQC6 (UniProtKB/Swiss-Prot),   Q3V3U9 (UniProtKB/Swiss-Prot),   Q9D5F1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001347932   ⟸   NM_001361003
- Peptide Label: isoform 1
- UniProtKB: Q9D0L8 (UniProtKB/Swiss-Prot),   Q6ZQC6 (UniProtKB/Swiss-Prot),   Q3V3U9 (UniProtKB/Swiss-Prot),   Q9D5F1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000123500   ⟸   ENSMUST00000139111
RefSeq Acc Id: ENSMUSP00000009679   ⟸   ENSMUST00000009679
RefSeq Acc Id: ENSMUSP00000122741   ⟸   ENSMUST00000131075
RefSeq Acc Id: ENSMUSP00000117459   ⟸   ENSMUST00000129849
RefSeq Acc Id: ENSMUSP00000025427   ⟸   ENSMUST00000025427
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D0L8-F1-model_v2 AlphaFold Q9D0L8 1-465 view protein structure

Promoters
RGD ID:13678096
Promoter ID:EPDNEW_M23197
Type:initiation region
Name:Rnmt_1
Description:Mus musculus RNA (guanine-7-) methyltransferase , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381868,300,400 - 68,300,460EPDNEW
RGD ID:6829021
Promoter ID:MM_KWN:25615
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001170953,   NM_026440,   NM_026440_RNMT,   NM_153794,   OTTMUST00000058467,   OTTMUST00000058502,   OTTMUST00000058503,   UC008FNJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361868,459,291 - 68,460,142 (-)MPROMDB
RGD ID:6829508
Promoter ID:MM_KWN:25618
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000058501
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361868,478,136 - 68,478,837 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915147 AgrOrtholog
Ensembl Genes ENSMUSG00000009535 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000009679 ENTREZGENE
  ENSMUST00000009679.11 UniProtKB/Swiss-Prot
  ENSMUST00000025427 ENTREZGENE
  ENSMUST00000025427.14 UniProtKB/Swiss-Prot
  ENSMUST00000129849.2 UniProtKB/TrEMBL
  ENSMUST00000131075.8 UniProtKB/TrEMBL
  ENSMUST00000139111.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro mRNA_G-N7_MeTrfase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  mRNA_G-N7_MeTrfase_euk UniProtKB/Swiss-Prot
  RG7MT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67897 UniProtKB/Swiss-Prot
MGD MGI:1915147 ENTREZGENE
NCBI Gene 67897 ENTREZGENE
PANTHER MRNA CAP GUANINE-N7 METHYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12189 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pox_MCEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnmt PhenoGen
PIRSF ABD1 UniProtKB/Swiss-Prot
PROSITE RNA_CAP0_MT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YYS7_MOUSE UniProtKB/TrEMBL
  D3Z478_MOUSE UniProtKB/TrEMBL
  D3Z4K1_MOUSE UniProtKB/TrEMBL
  MCES_MOUSE UniProtKB/Swiss-Prot
  Q3V3U9 ENTREZGENE
  Q6ZQC6 ENTREZGENE
  Q9D0L8 ENTREZGENE
  Q9D5F1 ENTREZGENE
UniProt Secondary Q3V3U9 UniProtKB/Swiss-Prot
  Q6ZQC6 UniProtKB/Swiss-Prot
  Q9D5F1 UniProtKB/Swiss-Prot