Rars1 (arginyl-tRNA synthetase 1) - Rat Genome Database

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Gene: Rars1 (arginyl-tRNA synthetase 1) Mus musculus
Analyze
Symbol: Rars1 (Ensembl: Rars)
Name: arginyl-tRNA synthetase 1 (Ensembl:arginyl-tRNA synthetase)
RGD ID: 1319433
MGI Page MGI
Description: Enables arginine-tRNA ligase activity. Involved in arginyl-tRNA aminoacylation. Located in mitochondrion. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 9. Orthologous to human RARS1 (arginyl-tRNA synthetase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610011N19Rik; 2610037E21Rik; AL033339; arginine--tRNA ligase; arginine--tRNA ligase, cytoplasmic; arginyl-tRNA synthetase, cytoplasmic; argRS; AW985894; Rars
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,699,207 - 35,725,355 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,699,208 - 35,725,333 (-)EnsemblGRCm39 Ensembl
GRCm381135,808,381 - 35,834,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,808,381 - 35,834,506 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,621,883 - 35,648,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,651,806 - 35,677,929 (-)NCBIMGSCv36mm8
Celera1139,591,462 - 39,617,635 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1121.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12060739   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15741177  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:18614015   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24457600   PMID:27746211   PMID:28378742   PMID:30196744   PMID:30457570  
PMID:30973865   PMID:32325033   PMID:33230847   PMID:36417873  


Genomics

Comparative Map Data
Rars1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,699,207 - 35,725,355 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,699,208 - 35,725,333 (-)EnsemblGRCm39 Ensembl
GRCm381135,808,381 - 35,834,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,808,381 - 35,834,506 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,621,883 - 35,648,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,651,806 - 35,677,929 (-)NCBIMGSCv36mm8
Celera1139,591,462 - 39,617,635 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1121.96NCBI
RARS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385168,486,471 - 168,519,301 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5168,486,451 - 168,519,301 (+)EnsemblGRCh38hg38GRCh38
GRCh375167,913,476 - 167,946,306 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365167,846,041 - 167,878,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 345167,846,040 - 167,878,885NCBI
Celera5163,948,808 - 163,981,683 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5163,012,238 - 163,045,058 (+)NCBIHuRef
CHM1_15167,346,530 - 167,379,378 (+)NCBICHM1_1
T2T-CHM13v2.05169,021,262 - 169,054,094 (+)NCBIT2T-CHM13v2.0
Rars1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81020,774,804 - 20,799,251 (-)NCBIGRCr8
mRatBN7.21020,270,744 - 20,295,192 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1020,270,483 - 20,295,196 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1025,021,858 - 25,046,283 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01024,510,383 - 24,534,811 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01019,994,537 - 20,018,847 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01020,633,630 - 20,658,074 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1020,633,632 - 20,658,100 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01020,505,807 - 20,530,334 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41020,721,170 - 20,745,484 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11020,722,223 - 20,746,536 (-)NCBI
Celera1019,889,464 - 19,913,910 (-)NCBICelera
Cytogenetic Map10q12NCBI
Rars1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540821,536,426 - 21,574,683 (+)NCBIChiLan1.0ChiLan1.0
RARS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24163,649,100 - 163,682,236 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15161,788,645 - 161,821,781 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05163,851,644 - 163,884,787 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15170,616,819 - 170,649,655 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5170,616,819 - 170,649,655 (+)Ensemblpanpan1.1panPan2
RARS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1443,237,499 - 43,260,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl443,237,499 - 43,260,677 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha443,193,938 - 43,217,200 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0443,659,249 - 43,682,521 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl443,650,992 - 43,682,460 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1443,428,969 - 43,452,203 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0443,623,543 - 43,646,768 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0444,129,367 - 44,152,642 (-)NCBIUU_Cfam_GSD_1.0
Rars1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721397,268,905 - 97,302,352 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936622884,423 - 918,650 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936622884,324 - 917,964 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RARS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1655,373,727 - 55,412,112 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11655,373,739 - 55,412,076 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21659,959,187 - 59,972,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RARS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12370,711,435 - 70,746,000 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2370,711,016 - 70,745,884 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660347,934,274 - 7,970,520 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rars1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473321,487,847 - 21,535,797 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473321,487,847 - 21,535,487 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rars1
1103 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:505
Count of miRNA genes:370
Interacting mature miRNAs:417
Transcripts:ENSMUST00000018992, ENSMUST00000137815, ENSMUST00000143205, ENSMUST00000165817, ENSMUST00000166122
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
10043922Alcw9_malcohol withdrawal 9 (mouse)Not determined113557861644065931Mouse
1301718Pbw3_mpentobarbital withdrawal QTL 3 (mouse)Not determined113557861644065931Mouse
1558769Zolw1_mzolpidem withdrawal 1 (mouse)Not determined113557861644065931Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse

Markers in Region
AW985894  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381135,809,178 - 35,809,272UniSTSGRCm38
MGSCv371135,622,680 - 35,622,774UniSTSGRCm37
Celera1139,592,259 - 39,592,353UniSTS
Cytogenetic Map11A4UniSTS
Whitehead/MRC_RH11513.55UniSTS
RH124249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381135,808,463 - 35,809,118UniSTSGRCm38
MGSCv371135,621,965 - 35,622,620UniSTSGRCm37
Celera1139,591,544 - 39,592,199UniSTS
Cytogenetic Map11A4UniSTS
Rars  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A4UniSTS
cM Map11 UniSTS
Rars  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_025936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK011383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB523934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF748175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018992   ⟹   ENSMUSP00000018992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,699,208 - 35,725,333 (-)Ensembl
GRCm38.p6 Ensembl1135,808,381 - 35,834,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,717,322 - 35,725,288 (-)Ensembl
GRCm38.p6 Ensembl1135,826,495 - 35,834,461 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,706,495 - 35,710,936 (-)Ensembl
GRCm38.p6 Ensembl1135,815,668 - 35,820,109 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,708,255 - 35,712,330 (-)Ensembl
GRCm38.p6 Ensembl1135,817,428 - 35,821,503 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,711,964 - 35,715,960 (-)Ensembl
GRCm38.p6 Ensembl1135,821,137 - 35,825,133 (-)Ensembl
RefSeq Acc Id: NM_025936   ⟹   NP_080212
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,699,208 - 35,725,355 (-)NCBI
GRCm381135,808,381 - 35,834,528 (-)ENTREZGENE
MGSCv371135,621,883 - 35,648,030 (-)RGD
Celera1139,591,462 - 39,617,635 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036156202   ⟹   XP_036012095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,699,207 - 35,725,346 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080212   ⟸   NM_025936
- UniProtKB: Q5SXA8 (UniProtKB/Swiss-Prot),   Q3U930 (UniProtKB/Swiss-Prot),   Q3U8R2 (UniProtKB/Swiss-Prot),   Q3TM73 (UniProtKB/Swiss-Prot),   Q3THP2 (UniProtKB/Swiss-Prot),   Q8VDW1 (UniProtKB/Swiss-Prot),   Q9D0I9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000018992   ⟸   ENSMUST00000018992
RefSeq Acc Id: XP_036012095   ⟸   XM_036156202
- Peptide Label: isoform X1
Protein Domains
Arginyl tRNA synthetase N-terminal   DALR anticodon binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D0I9-F1-model_v2 AlphaFold Q9D0I9 1-660 view protein structure

Promoters
RGD ID:6821709
Promoter ID:MM_KWN:6955
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000012068,   OTTMUST00000012070
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361135,647,719 - 35,648,219 (-)MPROMDB
RGD ID:8674300
Promoter ID:EPDNEW_M15180
Type:initiation region
Name:Rars_1
Description:Mus musculus arginyl-tRNA synthetase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,834,502 - 35,834,562EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914297 AgrOrtholog
Ensembl Genes ENSMUSG00000018848 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018992 ENTREZGENE
  ENSMUST00000018992.4 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1360.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.620 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro aa-tRNA-synth_I_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arg-tRNA-ligase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arg-tRNA-synth_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arg-tRNA-synth_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArgRS_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DALR_anticod-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNAsynth_Ia_anticodon-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:104458 UniProtKB/Swiss-Prot
MGD MGI:1914297 ENTREZGENE
NCBI Gene 104458 ENTREZGENE
PANTHER ARGININE--TRNA LIGASE, CYTOPLASMIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11956 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Arg_tRNA_synt_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DALR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA-synt_1d UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rars1 PhenoGen
PRINTS TRNASYNTHARG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Arg_tRNA_synt_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DALR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Nucleotidylyl transferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47323 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3THP2 ENTREZGENE
  Q3TM73 ENTREZGENE
  Q3TVC5_MOUSE UniProtKB/TrEMBL
  Q3U8R2 ENTREZGENE
  Q3U930 ENTREZGENE
  Q3UAZ3_MOUSE UniProtKB/TrEMBL
  Q5SXA8 ENTREZGENE
  Q8VDW1 ENTREZGENE
  Q9D0I9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3THP2 UniProtKB/Swiss-Prot
  Q3TM73 UniProtKB/Swiss-Prot
  Q3U8R2 UniProtKB/Swiss-Prot
  Q3U930 UniProtKB/Swiss-Prot
  Q5SXA8 UniProtKB/Swiss-Prot
  Q8VDW1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-05 Rars1  arginyl-tRNA synthetase 1  Rars  arginyl-tRNA synthetase  Symbol and/or name updated 27372883 PROVISIONAL