KLF12 (KLF transcription factor 12) - Rat Genome Database

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Gene: KLF12 (KLF transcription factor 12) Homo sapiens
Analyze
Symbol: KLF12
Name: KLF transcription factor 12
RGD ID: 1319416
HGNC Page HGNC:6346
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AP-2 repressor; AP-2rep; AP-2rep transcription factor; AP2REP; HSPC122; KLF12 zinc finger transcriptional repressor; Krueppel-like factor 12; Kruppel like factor 12; Kruppel-like factor 12; transcriptional repressor AP-2rep
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381373,686,089 - 74,306,045 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1373,686,089 - 74,134,404 (-)EnsemblGRCh38hg38GRCh38
GRCh371374,260,226 - 74,880,182 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361373,158,150 - 73,606,067 (-)NCBINCBI36Build 36hg18NCBI36
Build 341373,284,706 - 73,606,043NCBI
Celera1355,158,964 - 55,607,803 (-)NCBICelera
Cytogenetic Map13q22.1NCBI
HuRef1354,957,615 - 55,405,960 (-)NCBIHuRef
CHM1_11374,227,338 - 74,675,586 (-)NCBICHM1_1
T2T-CHM13v2.01372,907,694 - 73,528,039 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP)
amphetamine  (ISO)
amphotericin B  (EXP)
aristolochic acid A  (EXP)
Aroclor 1254  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
beauvericin  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
bromobenzene  (ISO)
butanal  (EXP)
carbon nanotube  (ISO)
cisplatin  (EXP)
clofibrate  (ISO)
coumestrol  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
dioxygen  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
elemental selenium  (EXP)
endosulfan  (ISO)
enniatin  (EXP)
Enterolactone  (EXP)
entinostat  (EXP)
ethyl methanesulfonate  (EXP)
folic acid  (ISO)
formaldehyde  (EXP)
FR900359  (EXP)
geldanamycin  (EXP)
gentamycin  (ISO)
Heptachlor epoxide  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
melphalan  (EXP)
mercury atom  (EXP)
mercury(0)  (EXP)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (ISO)
nitrofen  (ISO)
O-methyleugenol  (EXP)
paracetamol  (ISO)
PCB138  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (ISO)
rofecoxib  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
SB 431542  (EXP)
selenium atom  (EXP)
serpentine asbestos  (EXP)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP,ISO)
temozolomide  (EXP)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thimerosal  (EXP)
thioacetamide  (ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
versicolorin A  (EXP)
vincristine  (EXP)
vorinostat  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISA)
cytosol  (IDA)
nucleoplasm  (IDA)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9858544   PMID:10704285   PMID:11042152   PMID:11373277   PMID:11406275   PMID:11935316   PMID:12477932   PMID:14702039   PMID:15057823   PMID:15489334   PMID:15937668   PMID:16189514  
PMID:16344560   PMID:16615998   PMID:18668548   PMID:19240061   PMID:19274049   PMID:19588488   PMID:19907058   PMID:20049410   PMID:20101243   PMID:20379614   PMID:21076409   PMID:21244100  
PMID:21658422   PMID:21822266   PMID:21832049   PMID:21873635   PMID:22150086   PMID:22359512   PMID:23134681   PMID:23458459   PMID:23897914   PMID:24722188   PMID:24952347   PMID:24952745  
PMID:25086665   PMID:25130324   PMID:25231870   PMID:25416956   PMID:26223982   PMID:26455320   PMID:26638075   PMID:26750805   PMID:27107012   PMID:27278159   PMID:27442508   PMID:27468717  
PMID:28095864   PMID:28359310   PMID:28473536   PMID:28514442   PMID:29117863   PMID:29507755   PMID:30243935   PMID:30430564   PMID:30866999   PMID:31500453   PMID:32296183   PMID:32694731  
PMID:32814053   PMID:32958011   PMID:33275224   PMID:33279628   PMID:33961781   PMID:34117589   PMID:34461926   PMID:34644678   PMID:35044719   PMID:35140242   PMID:36272152   PMID:37156774  
PMID:37290172   PMID:37543362   PMID:37606530   PMID:37698263  


Genomics

Comparative Map Data
KLF12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381373,686,089 - 74,306,045 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1373,686,089 - 74,134,404 (-)EnsemblGRCh38hg38GRCh38
GRCh371374,260,226 - 74,880,182 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361373,158,150 - 73,606,067 (-)NCBINCBI36Build 36hg18NCBI36
Build 341373,284,706 - 73,606,043NCBI
Celera1355,158,964 - 55,607,803 (-)NCBICelera
Cytogenetic Map13q22.1NCBI
HuRef1354,957,615 - 55,405,960 (-)NCBIHuRef
CHM1_11374,227,338 - 74,675,586 (-)NCBICHM1_1
T2T-CHM13v2.01372,907,694 - 73,528,039 (-)NCBIT2T-CHM13v2.0
Klf12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914100,103,617 - 100,719,681 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14100,108,068 - 100,522,115 (-)EnsemblGRCm39 Ensembl
GRCm381499,866,181 - 100,285,891 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1499,870,632 - 100,284,679 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714100,269,851 - 100,549,015 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361498,753,766 - 99,032,930 (-)NCBIMGSCv36mm8
Celera1498,543,645 - 98,822,073 (-)NCBICelera
Cytogenetic Map14E2.2- E2.3NCBI
cM Map1450.9NCBI
Klf12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81583,037,548 - 83,469,998 (-)NCBIGRCr8
mRatBN7.21576,628,778 - 77,062,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1576,637,654 - 77,062,056 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1580,623,760 - 80,973,738 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01581,700,349 - 82,050,323 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01578,647,950 - 78,997,925 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01584,316,986 - 84,748,549 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1584,324,470 - 84,748,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01588,087,725 - 88,517,300 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41583,686,143 - 84,046,291 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11583,824,681 - 83,885,689 (-)NCBI
Celera1575,877,048 - 76,225,583 (-)NCBICelera
Cytogenetic Map15q21NCBI
Klf12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540432,854,754 - 33,118,361 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540432,715,636 - 33,127,525 (+)NCBIChiLan1.0ChiLan1.0
KLF12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21475,267,675 - 75,717,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11373,867,629 - 74,309,095 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01354,916,443 - 55,535,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11373,688,429 - 74,136,126 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1373,697,912 - 73,996,956 (-)Ensemblpanpan1.1panPan2
KLF12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12227,695,017 - 28,264,813 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2227,704,686 - 28,123,099 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2227,545,323 - 28,120,406 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02228,028,356 - 28,604,139 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2228,042,396 - 28,462,397 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12227,683,490 - 28,257,505 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02227,722,157 - 28,312,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02227,794,427 - 28,385,703 (-)NCBIUU_Cfam_GSD_1.0
Klf12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945131,272,121 - 131,875,349 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365116,854,995 - 7,283,347 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365116,992,131 - 7,292,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLF12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,985,564 - 46,459,791 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,981,096 - 46,655,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21150,573,347 - 50,616,802 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLF12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1352,817,588 - 53,153,414 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660468,926,353 - 9,374,326 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klf12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475126,508,490 - 26,798,125 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475126,363,475 - 26,807,430 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KLF12
46 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
t(9;13)(q31.2;q22.1) translocation not provided [RCV000509424] Chr9:9q31.2 pathogenic
GRCh38/hg38 13q12.3-31.3(chr13:31363472-90575292)x3 copy number gain See cases [RCV000050293] Chr13:31363472..90575292 [GRCh38]
Chr13:31937609..91227546 [GRCh37]
Chr13:30835609..90025547 [NCBI36]
Chr13:13q12.3-31.3		 pathogenic
GRCh38/hg38 13q14.12-31.3(chr13:44967523-92738168)x1 copy number loss See cases [RCV000050891] Chr13:44967523..92738168 [GRCh38]
Chr13:45541658..93390421 [GRCh37]
Chr13:44439658..92188422 [NCBI36]
Chr13:13q14.12-31.3		 pathogenic
GRCh38/hg38 13q22.1(chr13:73764880-73913556)x1 copy number loss See cases [RCV000051007] Chr13:73764880..73913556 [GRCh38]
Chr13:74339017..74487693 [GRCh37]
Chr13:73237018..73385694 [NCBI36]
Chr13:13q22.1		 uncertain significance
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000053731] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q12.3-31.1(chr13:30318913-83610426)x3 copy number gain See cases [RCV000053737] Chr13:30318913..83610426 [GRCh38]
Chr13:30893050..84184561 [GRCh37]
Chr13:29791050..83082562 [NCBI36]
Chr13:13q12.3-31.1		 pathogenic
GRCh38/hg38 13q11-34(chr13:18565048-114327173)x3 copy number gain See cases [RCV000053719] Chr13:18565048..114327173 [GRCh38]
Chr13:19139188..115085141 [GRCh37]
Chr13:18037188..114110750 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:18946182-114304628)x3 copy number gain See cases [RCV000053726] Chr13:18946182..114304628 [GRCh38]
Chr13:19520322..115070103 [GRCh37]
Chr13:18418322..114088205 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q13.2-34(chr13:33528097-114327173)x3 copy number gain See cases [RCV000053759] Chr13:33528097..114327173 [GRCh38]
Chr13:34102234..115085141 [GRCh37]
Chr13:33000234..114110750 [NCBI36]
Chr13:13q13.2-34		 pathogenic
GRCh38/hg38 13q14.11-34(chr13:43219125-114327314)x3 copy number gain See cases [RCV000053762] Chr13:43219125..114327314 [GRCh38]
Chr13:43793261..115085141 [GRCh37]
Chr13:42691261..114110891 [NCBI36]
Chr13:13q14.11-34		 pathogenic
GRCh38/hg38 13q14.11-34(chr13:44164751-114327173)x3 copy number gain See cases [RCV000053764] Chr13:44164751..114327173 [GRCh38]
Chr13:44738887..115085141 [GRCh37]
Chr13:43636887..114110750 [NCBI36]
Chr13:13q14.11-34		 pathogenic
GRCh38/hg38 13q14.12-34(chr13:44733046-114327173)x3 copy number gain See cases [RCV000053767] Chr13:44733046..114327173 [GRCh38]
Chr13:45307182..115085141 [GRCh37]
Chr13:44205182..114110750 [NCBI36]
Chr13:13q14.12-34		 pathogenic
GRCh38/hg38 13q21.33-31.1(chr13:71509212-82146085)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053768]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053768]|See cases [RCV000053768] Chr13:71509212..82146085 [GRCh38]
Chr13:72083344..82720220 [GRCh37]
Chr13:70981345..81618221 [NCBI36]
Chr13:13q21.33-31.1		 pathogenic
NM_007249.4(KLF12):c.33+11669A>C single nucleotide variant Lung cancer [RCV000098240] Chr13:73983321 [GRCh38]
Chr13:74557458 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh38/hg38 13q14.11-31.1(chr13:41288493-85137552)x3 copy number gain See cases [RCV000133944] Chr13:41288493..85137552 [GRCh38]
Chr13:41862629..85711687 [GRCh37]
Chr13:40760629..84609688 [NCBI36]
Chr13:13q14.11-31.1		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114298614)x3 copy number gain See cases [RCV000134104] Chr13:19833130..114298614 [GRCh38]
Chr13:20407270..115064089 [GRCh37]
Chr13:19305270..114082191 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q21.32-31.2(chr13:66320998-87855429)x1 copy number loss See cases [RCV000134874] Chr13:66320998..87855429 [GRCh38]
Chr13:66895130..88507684 [GRCh37]
Chr13:65793131..87305685 [NCBI36]
Chr13:13q21.32-31.2		 pathogenic
GRCh38/hg38 13q21.2-31.1(chr13:60536344-84553188)x1 copy number loss See cases [RCV000134951] Chr13:60536344..84553188 [GRCh38]
Chr13:61110478..85127323 [GRCh37]
Chr13:60008479..84025324 [NCBI36]
Chr13:13q21.2-31.1		 pathogenic
GRCh38/hg38 13q11-34(chr13:18445862-114327173)x1 copy number loss See cases [RCV000135610] Chr13:18445862..114327173 [GRCh38]
Chr13:19020001..115085141 [GRCh37]
Chr13:10098739..114110750 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q14.11-31.1(chr13:41143820-85137552)x1 copy number loss See cases [RCV000136526] Chr13:41143820..85137552 [GRCh38]
Chr13:41717956..85711687 [GRCh37]
Chr13:40615956..84609688 [NCBI36]
Chr13:13q14.11-31.1		 pathogenic
GRCh38/hg38 13q14.2-31.1(chr13:47117587-84300935)x1 copy number loss See cases [RCV000136647] Chr13:47117587..84300935 [GRCh38]
Chr13:47691722..84875070 [GRCh37]
Chr13:46589723..83773071 [NCBI36]
Chr13:13q14.2-31.1		 pathogenic
GRCh38/hg38 13q14.11-34(chr13:40942298-114340331)x1 copy number loss See cases [RCV000137893] Chr13:40942298..114340331 [GRCh38]
Chr13:41516434..115085141 [GRCh37]
Chr13:40414434..114123908 [NCBI36]
Chr13:13q14.11-34		 pathogenic
GRCh38/hg38 13q21.33-31.1(chr13:72681540-79638468)x1 copy number loss See cases [RCV000138575] Chr13:72681540..79638468 [GRCh38]
Chr13:73255678..80212603 [GRCh37]
Chr13:72153679..79110604 [NCBI36]
Chr13:13q21.33-31.1		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114327106)x3 copy number gain See cases [RCV000139078] Chr13:19833130..114327106 [GRCh38]
Chr13:20407270..115085141 [GRCh37]
Chr13:19305270..114110683 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q21.31-22.1(chr13:64065900-73693578)x3 copy number gain See cases [RCV000139020] Chr13:64065900..73693578 [GRCh38]
Chr13:64640033..74267715 [GRCh37]
Chr13:63538034..73165716 [NCBI36]
Chr13:13q21.31-22.1		 pathogenic
GRCh38/hg38 13q11-34(chr13:18456040-114340285)x3 copy number gain See cases [RCV000140004] Chr13:18456040..114340285 [GRCh38]
Chr13:19030180..115105760 [GRCh37]
Chr13:17928180..114123862 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q21.31-31.1(chr13:63713365-79638415)x1 copy number loss See cases [RCV000141460] Chr13:63713365..79638415 [GRCh38]
Chr13:64287498..80212550 [GRCh37]
Chr13:63185499..79110551 [NCBI36]
Chr13:13q21.31-31.1		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19671934-114340331)x3 copy number gain See cases [RCV000142924] Chr13:19671934..114340331 [GRCh38]
Chr13:20246074..115085141 [GRCh37]
Chr13:19144074..114123908 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh38/hg38 13q11-34(chr13:18862146-114342258)x3 copy number gain See cases [RCV000143462] Chr13:18862146..114342258 [GRCh38]
Chr13:19436286..115107733 [GRCh37]
Chr13:18334286..114125835 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q12.3-31.3(chr13:31363472-90575292)x3 copy number gain See cases [RCV000148244] Chr13:31363472..90575292 [GRCh38]
Chr13:31937609..91227546 [GRCh37]
Chr13:30835609..90025547 [NCBI36]
Chr13:13q12.3-31.3		 pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000148126] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34		 pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092569)x3 copy number gain See cases [RCV000240150] Chr13:19571503..115092569 [GRCh37]
Chr13:13q12.11-34		 pathogenic
GRCh37/hg19 13q21.33-31.2(chr13:72013791-88021559)x1 copy number loss See cases [RCV000240205] Chr13:72013791..88021559 [GRCh37]
Chr13:13q21.33-31.2		 pathogenic
NC_000013.11:g.46968080_87381985del40413906 deletion Chromosome 13q14 deletion syndrome [RCV000721955] Chr13:46968080..87381985 [GRCh38]
Chr13:13q14.2-31.2		 pathogenic
GRCh37/hg19 13q22.1-31.3(chr13:74459395-93481294)x1 copy number loss See cases [RCV000598789] Chr13:74459395..93481294 [GRCh37]
Chr13:13q22.1-31.3		 pathogenic
GRCh37/hg19 13q21.2-34(chr13:61424168-115107733)x3 copy number gain See cases [RCV000449118] Chr13:61424168..115107733 [GRCh37]
Chr13:13q21.2-34		 pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092510) copy number gain See cases [RCV000449142] Chr13:19571503..115092510 [GRCh37]
Chr13:13q12.11-34		 pathogenic
GRCh37/hg19 13q21.33-22.1(chr13:69200998-75160653)x1 copy number loss See cases [RCV000446609] Chr13:69200998..75160653 [GRCh37]
Chr13:13q21.33-22.1		 uncertain significance
GRCh37/hg19 13q14.11-31.3(chr13:42457841-91796698)x1 copy number loss See cases [RCV000446747] Chr13:42457841..91796698 [GRCh37]
Chr13:13q14.11-31.3		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain See cases [RCV000445886] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q21.1-34(chr13:56431743-115107733) copy number gain See cases [RCV000510722] Chr13:56431743..115107733 [GRCh37]
Chr13:13q21.1-34		 pathogenic
GRCh37/hg19 13q22.1(chr13:73803512-74364906)x3 copy number gain See cases [RCV000445712] Chr13:73803512..74364906 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q21.33-31.1(chr13:72174742-82221361)x1 copy number loss See cases [RCV000448053] Chr13:72174742..82221361 [GRCh37]
Chr13:13q21.33-31.1		 pathogenic
GRCh37/hg19 13q21.2-31.1(chr13:61686543-83302092)x1 copy number loss See cases [RCV000448229] Chr13:61686543..83302092 [GRCh37]
Chr13:13q21.2-31.1		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733) copy number gain See cases [RCV000510405] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q21.33-34(chr13:71871468-115107733)x4 copy number gain See cases [RCV000510281] Chr13:71871468..115107733 [GRCh37]
Chr13:13q21.33-34		 pathogenic
GRCh37/hg19 13q14.3-32.1(chr13:53932358-96586363)x3 copy number gain See cases [RCV000512571] Chr13:53932358..96586363 [GRCh37]
Chr13:13q14.3-32.1		 pathogenic
GRCh37/hg19 13q11-34(chr13:19058717-115103529)x3 copy number gain not provided [RCV000738115] Chr13:19058717..115103529 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q11-34(chr13:19031237-115107157)x3 copy number gain not provided [RCV000750643] Chr13:19031237..115107157 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q21.1-31.3(chr13:57058434-94684615)x1 copy number loss not provided [RCV000750731] Chr13:57058434..94684615 [GRCh37]
Chr13:13q21.1-31.3		 pathogenic
GRCh37/hg19 13q22.1(chr13:74152544-74283131) copy number gain Aortic valve disease 1 [RCV000770942] Chr13:74152544..74283131 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q14.3-34(chr13:53262013-115107733)x1 copy number loss not provided [RCV001006567] Chr13:53262013..115107733 [GRCh37]
Chr13:13q14.3-34		 pathogenic
GRCh37/hg19 13q21.2-34(chr13:61775567-115107733)x3 copy number gain not provided [RCV000848025] Chr13:61775567..115107733 [GRCh37]
Chr13:13q21.2-34		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV000849129] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q21.33-31.1(chr13:71502357-86571730)x1 copy number loss not provided [RCV001006577] Chr13:71502357..86571730 [GRCh37]
Chr13:13q21.33-31.1		 pathogenic
GRCh37/hg19 13q14.3-31.3(chr13:51512603-91631111)x1 copy number loss not provided [RCV001006564] Chr13:51512603..91631111 [GRCh37]
Chr13:13q14.3-31.3		 pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878) copy number gain Complete trisomy 13 syndrome [RCV002280659] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34		 pathogenic
GRCh37/hg19 13q11-34(chr13:19053605-115108528)x3 copy number gain See cases [RCV001353184] Chr13:19053605..115108528 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878)x3 copy number gain See cases [RCV001780076] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34		 pathogenic
GRCh37/hg19 13q13.3-31.1(chr13:36376204-80681753) copy number loss not specified [RCV002053052] Chr13:36376204..80681753 [GRCh37]
Chr13:13q13.3-31.1		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV001834436] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q21.2-34(chr13:61424168-115107733) copy number gain not specified [RCV002053063] Chr13:61424168..115107733 [GRCh37]
Chr13:13q21.2-34		 pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733) copy number gain not specified [RCV002053036] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q22.1(chr13:73803512-74364906) copy number gain not specified [RCV002053069] Chr13:73803512..74364906 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q21.1-31.2(chr13:59574760-89410027)x1 copy number loss not provided [RCV001834426] Chr13:59574760..89410027 [GRCh37]
Chr13:13q21.1-31.2		 pathogenic
GRCh37/hg19 13q21.33-22.1(chr13:69200998-75160653) copy number loss not specified [RCV002053066] Chr13:69200998..75160653 [GRCh37]
Chr13:13q21.33-22.1		 uncertain significance
GRCh37/hg19 13q11-34(chr13:19436286-114981726) copy number gain not specified [RCV002053035] Chr13:19436286..114981726 [GRCh37]
Chr13:13q11-34		 pathogenic
GRCh37/hg19 13q21.2-31.1(chr13:61686543-83302092) copy number loss not specified [RCV002053064] Chr13:61686543..83302092 [GRCh37]
Chr13:13q21.2-31.1		 pathogenic
GRCh37/hg19 13q14.11-31.3(chr13:42457841-91796698) copy number loss not specified [RCV002053057] Chr13:42457841..91796698 [GRCh37]
Chr13:13q14.11-31.3		 pathogenic
GRCh37/hg19 13q22.1(chr13:73468241-74647046) copy number loss not specified [RCV002053068] Chr13:73468241..74647046 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q14.11-33.3(chr13:42504540-108206269)x3 copy number gain not provided [RCV001829235] Chr13:42504540..108206269 [GRCh37]
Chr13:13q14.11-33.3		 pathogenic
GRCh37/hg19 13q11-34(chr13:19253848-115108937)x3 copy number gain not provided [RCV002291540] Chr13:19253848..115108937 [GRCh37]
Chr13:13q11-34		 pathogenic
NM_001400136.1(KLF12):c.688G>A (p.Gly230Ser) single nucleotide variant Inborn genetic diseases [RCV002837368] Chr13:73813270 [GRCh38]
Chr13:74387407 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q22.1-22.3(chr13:73600015-77624907)x1 copy number loss not provided [RCV002475822] Chr13:73600015..77624907 [GRCh37]
Chr13:13q22.1-22.3		 uncertain significance
NM_001400136.1(KLF12):c.497C>G (p.Pro166Arg) single nucleotide variant Inborn genetic diseases [RCV002844464] Chr13:73846000 [GRCh38]
Chr13:74420137 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.944G>A (p.Arg315His) single nucleotide variant Inborn genetic diseases [RCV002644579] Chr13:73715451 [GRCh38]
Chr13:74289588 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.371C>T (p.Ala124Val) single nucleotide variant Inborn genetic diseases [RCV002802595] Chr13:73846126 [GRCh38]
Chr13:74420263 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.740A>G (p.Asn247Ser) single nucleotide variant Inborn genetic diseases [RCV002762994] Chr13:73813218 [GRCh38]
Chr13:74387355 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.356C>T (p.Ser119Phe) single nucleotide variant Inborn genetic diseases [RCV002931148] Chr13:73846141 [GRCh38]
Chr13:74420278 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.922T>C (p.Ser308Pro) single nucleotide variant Inborn genetic diseases [RCV003215648] Chr13:73715473 [GRCh38]
Chr13:74289610 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.190G>A (p.Glu64Lys) single nucleotide variant Inborn genetic diseases [RCV003361931] Chr13:73846307 [GRCh38]
Chr13:74420444 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.120A>C (p.Gln40His) single nucleotide variant Inborn genetic diseases [RCV003354824] Chr13:73943984 [GRCh38]
Chr13:74518121 [GRCh37]
Chr13:13q22.1		 uncertain significance
NM_001400136.1(KLF12):c.89G>T (p.Arg30Ile) single nucleotide variant Inborn genetic diseases [RCV003361964] Chr13:73944015 [GRCh38]
Chr13:74518152 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q21.33-33.1(chr13:73132193-104595598)x1 copy number loss not provided [RCV003483190] Chr13:73132193..104595598 [GRCh37]
Chr13:13q21.33-33.1		 pathogenic
GRCh37/hg19 13q21.33-22.2(chr13:71119640-76667297)x1 copy number loss not provided [RCV003483189] Chr13:71119640..76667297 [GRCh37]
Chr13:13q21.33-22.2		 uncertain significance
GRCh37/hg19 13q22.1-34(chr13:73488238-115107733)x3 copy number gain not provided [RCV003484901] Chr13:73488238..115107733 [GRCh37]
Chr13:13q22.1-34		 pathogenic
GRCh37/hg19 13q22.1(chr13:74201183-74494276)x3 copy number gain not provided [RCV003484902] Chr13:74201183..74494276 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q21.2-34(chr13:61534068-115107733)x3 copy number gain not provided [RCV003484899] Chr13:61534068..115107733 [GRCh37]
Chr13:13q21.2-34		 pathogenic
GRCh37/hg19 13q21.1-31.3(chr13:56450978-93582180)x1 copy number loss not specified [RCV003987013] Chr13:56450978..93582180 [GRCh37]
Chr13:13q21.1-31.3		 pathogenic
GRCh37/hg19 13q21.31-33.1(chr13:64825656-103641349)x1 copy number loss not specified [RCV003987009] Chr13:64825656..103641349 [GRCh37]
Chr13:13q21.31-33.1		 pathogenic
GRCh37/hg19 13q14.2-32.2(chr13:49547974-98214905)x1 copy number loss not specified [RCV003987008] Chr13:49547974..98214905 [GRCh37]
Chr13:13q14.2-32.2		 pathogenic
GRCh38/hg38 13q11-34(chr13:18850545-114327173)x3 copy number gain See cases [RCV000053723] Chr13:18850545..114327173 [GRCh38]
Chr13:19296527..115085141 [GRCh37]
Chr13:18194527..114110750 [NCBI36]
Chr13:13q11-34		 pathogenic
GRCh38/hg38 13q22.1(chr13:73231067-73764939)x3 copy number gain See cases [RCV000138179] Chr13:73231067..73764939 [GRCh38]
Chr13:73805204..74339076 [GRCh37]
Chr13:72703205..73237077 [NCBI36]
Chr13:13q22.1		 likely benign
GRCh38/hg38 13q13.1-31.1(chr13:32531486-86757044)x3 copy number gain See cases [RCV000138339] Chr13:32531486..86757044 [GRCh38]
Chr13:33105623..87409299 [GRCh37]
Chr13:32003623..86207300 [NCBI36]
Chr13:13q13.1-31.1		 pathogenic
GRCh37/hg19 13q14.3-33.3(chr13:53551300-109850651)x1 copy number loss See cases [RCV000449272] Chr13:53551300..109850651 [GRCh37]
Chr13:13q14.3-33.3		 pathogenic
GRCh37/hg19 13q22.1(chr13:73468241-74647046)x1 copy number loss See cases [RCV000445680] Chr13:73468241..74647046 [GRCh37]
Chr13:13q22.1		 uncertain significance
GRCh37/hg19 13q11-34(chr13:19436287-115107733)x3 copy number gain See cases [RCV000511880] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3632
Count of miRNA genes:1337
Interacting mature miRNAs:1727
Transcripts:ENST00000377666, ENST00000377669, ENST00000472022
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D13S166  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,615,801 - 74,615,918UniSTSGRCh37
GRCh371374,615,800 - 74,615,916UniSTSGRCh37
Build 361373,513,801 - 73,513,917RGDNCBI36
Celera1355,514,464 - 55,514,578RGD
Celera1355,514,465 - 55,514,580UniSTS
Cytogenetic Map13q22UniSTS
HuRef1355,313,698 - 55,313,812UniSTS
HuRef1355,313,699 - 55,313,814UniSTS
Marshfield Genetic Map1355.31RGD
Genethon Genetic Map1357.3UniSTS
TNG Radiation Hybrid Map1324984.0UniSTS
deCODE Assembly Map1369.73UniSTS
Stanford-G3 RH Map131965.0UniSTS
Whitehead-YAC Contig Map13 UniSTS
GeneMap99-G3 RH Map131958.0UniSTS
D13S156  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,657,493 - 74,657,774UniSTSGRCh37
GRCh371374,657,531 - 74,657,774UniSTSGRCh37
Build 361373,555,494 - 73,555,775RGDNCBI36
Celera1355,556,192 - 55,556,431UniSTS
Celera1355,556,154 - 55,556,431RGD
Cytogenetic Map13q22UniSTS
Cytogenetic Map13qUniSTS
HuRef1355,355,426 - 55,355,665UniSTS
HuRef1355,355,388 - 55,355,665UniSTS
Marshfield Genetic Map1355.85RGD
Genethon Genetic Map1357.3UniSTS
TNG Radiation Hybrid Map1325018.0UniSTS
deCODE Assembly Map1369.73UniSTS
Stanford-G3 RH Map131955.0UniSTS
GeneMap99-GB4 RH Map13213.71UniSTS
Whitehead-RH Map13193.2UniSTS
Whitehead-YAC Contig Map13 UniSTS
NCBI RH Map13625.8UniSTS
GeneMap99-G3 RH Map131948.0UniSTS
RH45263  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,642,047 - 74,642,243UniSTSGRCh37
Build 361373,540,048 - 73,540,244RGDNCBI36
Celera1355,540,706 - 55,540,902RGD
Cytogenetic Map13q22UniSTS
HuRef1355,339,942 - 55,340,138UniSTS
GeneMap99-GB4 RH Map13213.61UniSTS
SHGC-4027  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,521,815 - 74,521,972UniSTSGRCh37
Build 361373,419,816 - 73,419,973RGDNCBI36
Celera1355,420,548 - 55,420,705RGD
Cytogenetic Map13q22UniSTS
HuRef1355,219,770 - 55,219,927UniSTS
Stanford-G3 RH Map131971.0UniSTS
NCBI RH Map13629.1UniSTS
RH45042  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,329,866 - 74,330,063UniSTSGRCh37
Build 361373,227,867 - 73,228,064RGDNCBI36
Celera1355,228,667 - 55,228,864RGD
Cytogenetic Map13q22UniSTS
HuRef1355,027,300 - 55,027,497UniSTS
GeneMap99-GB4 RH Map13214.01UniSTS
RH98942  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,378,857 - 74,379,042UniSTSGRCh37
Build 361373,276,858 - 73,277,043RGDNCBI36
Celera1355,277,635 - 55,277,820RGD
Cytogenetic Map13q22UniSTS
HuRef1355,076,336 - 55,076,521UniSTS
GeneMap99-GB4 RH Map13210.67UniSTS
RH93662  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,544,731 - 74,544,911UniSTSGRCh37
Build 361373,442,732 - 73,442,912RGDNCBI36
Celera1355,443,406 - 55,443,586RGD
Cytogenetic Map13q22UniSTS
HuRef1355,242,640 - 55,242,820UniSTS
GeneMap99-GB4 RH Map13213.61UniSTS
RH103306  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,261,119 - 74,261,238UniSTSGRCh37
Build 361373,159,120 - 73,159,239RGDNCBI36
Celera1355,159,934 - 55,160,053RGD
Cytogenetic Map13q22UniSTS
HuRef1354,958,585 - 54,958,704UniSTS
GeneMap99-GB4 RH Map13213.61UniSTS
G60008  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,387,080 - 74,387,270UniSTSGRCh37
Build 361373,285,081 - 73,285,271RGDNCBI36
Celera1355,285,856 - 55,286,046RGD
Cytogenetic Map13q22UniSTS
HuRef1355,084,784 - 55,084,974UniSTS
TNG Radiation Hybrid Map1324901.0UniSTS
D13S681E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,261,728 - 74,261,907UniSTSGRCh37
Build 361373,159,729 - 73,159,908RGDNCBI36
Celera1355,160,543 - 55,160,722RGD
Cytogenetic Map13q22UniSTS
HuRef1354,959,194 - 54,959,373UniSTS
SHGC-132738  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,521,834 - 74,522,140UniSTSGRCh37
Build 361373,419,835 - 73,420,141RGDNCBI36
Celera1355,420,567 - 55,420,873RGD
Cytogenetic Map13q22UniSTS
HuRef1355,219,789 - 55,220,095UniSTS
TNG Radiation Hybrid Map1324931.0UniSTS
SHGC-147813  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,512,971 - 74,513,288UniSTSGRCh37
Build 361373,410,972 - 73,411,289RGDNCBI36
Celera1355,411,704 - 55,412,021RGD
Cytogenetic Map13q22UniSTS
HuRef1355,210,730 - 55,211,047UniSTS
TNG Radiation Hybrid Map1324944.0UniSTS
SHGC-149929  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,378,703 - 74,379,049UniSTSGRCh37
Build 361373,276,704 - 73,277,050RGDNCBI36
Celera1355,277,481 - 55,277,827RGD
Cytogenetic Map13q22UniSTS
HuRef1355,076,182 - 55,076,528UniSTS
TNG Radiation Hybrid Map1324897.0UniSTS
WI-17043  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,661,561 - 74,661,661UniSTSGRCh37
Build 361373,559,562 - 73,559,662RGDNCBI36
Celera1355,560,218 - 55,560,318RGD
Cytogenetic Map13q22UniSTS
HuRef1355,359,453 - 55,359,553UniSTS
GeneMap99-GB4 RH Map13211.28UniSTS
Whitehead-RH Map13193.1UniSTS
G67105  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,683,469 - 74,683,591UniSTSGRCh37
Build 361373,581,470 - 73,581,592RGDNCBI36
Celera1355,583,201 - 55,583,323RGD
Cytogenetic Map13q22UniSTS
HuRef1355,381,361 - 55,381,483UniSTS
G67106  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,494,097 - 74,494,268UniSTSGRCh37
Build 361373,392,098 - 73,392,269RGDNCBI36
Celera1355,392,840 - 55,393,011RGD
Cytogenetic Map13q22UniSTS
HuRef1355,191,867 - 55,192,038UniSTS
G67148  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,702,512 - 74,702,619UniSTSGRCh37
Build 361373,600,513 - 73,600,620RGDNCBI36
Celera1355,602,251 - 55,602,357RGD
Cytogenetic Map13q22UniSTS
HuRef1355,400,409 - 55,400,515UniSTS
G67098  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,303,285 - 74,303,401UniSTSGRCh37
Build 361373,201,286 - 73,201,402RGDNCBI36
Celera1355,202,097 - 55,202,213RGD
Cytogenetic Map13q22UniSTS
HuRef1355,000,747 - 55,000,863UniSTS
G67103  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,703,683 - 74,703,799UniSTSGRCh37
Build 361373,601,684 - 73,601,800RGDNCBI36
Celera1355,603,421 - 55,603,537RGD
Cytogenetic Map13q22UniSTS
HuRef1355,401,579 - 55,401,695UniSTS
G67104  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,548,662 - 74,548,772UniSTSGRCh37
Build 361373,446,663 - 73,446,773RGDNCBI36
Celera1355,447,346 - 55,447,456RGD
Cytogenetic Map13q22UniSTS
HuRef1355,246,580 - 55,246,690UniSTS
G67107  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,695,573 - 74,695,876UniSTSGRCh37
Build 361373,593,574 - 73,593,877RGDNCBI36
Celera1355,595,309 - 55,595,612RGD
Cytogenetic Map13q22UniSTS
HuRef1355,393,465 - 55,393,768UniSTS
KLF12_1562  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,260,164 - 74,260,936UniSTSGRCh37
Build 361373,158,165 - 73,158,937RGDNCBI36
Celera1355,158,979 - 55,159,751RGD
HuRef1354,957,630 - 54,958,402UniSTS
D13S821E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,261,946 - 74,262,036UniSTSGRCh37
Build 361373,159,947 - 73,160,037RGDNCBI36
Celera1355,160,761 - 55,160,851RGD
Cytogenetic Map13q22UniSTS
HuRef1354,959,412 - 54,959,502UniSTS
WI-13803  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,268,454 - 74,268,581UniSTSGRCh37
Build 361373,166,455 - 73,166,582RGDNCBI36
Celera1355,167,269 - 55,167,396RGD
Cytogenetic Map13q22UniSTS
HuRef1354,965,920 - 54,966,047UniSTS
GeneMap99-GB4 RH Map13213.61UniSTS
Whitehead-RH Map13191.5UniSTS
NCBI RH Map13617.6UniSTS
D13S856E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,261,885 - 74,261,970UniSTSGRCh37
Build 361373,159,886 - 73,159,971RGDNCBI36
Celera1355,160,700 - 55,160,785RGD
Cytogenetic Map13q22UniSTS
HuRef1354,959,351 - 54,959,436UniSTS
GeneMap99-GB4 RH Map13213.71UniSTS
RH15688  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,261,740 - 74,261,907UniSTSGRCh37
Build 361373,159,741 - 73,159,908RGDNCBI36
Celera1355,160,555 - 55,160,722RGD
Cytogenetic Map13q22UniSTS
HuRef1354,959,206 - 54,959,373UniSTS
GeneMap99-GB4 RH Map13210.67UniSTS
STS-AA009838  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,665,686 - 74,665,935UniSTSGRCh37
Build 361373,563,687 - 73,563,936RGDNCBI36
Celera1355,564,341 - 55,564,590RGD
Cytogenetic Map13q22UniSTS
HuRef1355,363,577 - 55,363,826UniSTS
GeneMap99-GB4 RH Map13207.43UniSTS
SHGC-9129  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,691,479 - 74,691,604UniSTSGRCh37
Build 361373,589,480 - 73,589,605RGDNCBI36
Celera1355,591,216 - 55,591,341RGD
Cytogenetic Map13q22UniSTS
HuRef1355,389,372 - 55,389,497UniSTS
Stanford-G3 RH Map131950.0UniSTS
NCBI RH Map13627.1UniSTS
RH45383  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,387,080 - 74,387,272UniSTSGRCh37
Build 361373,285,081 - 73,285,273RGDNCBI36
Celera1355,285,856 - 55,286,048RGD
Cytogenetic Map13q22UniSTS
HuRef1355,084,784 - 55,084,976UniSTS
GeneMap99-GB4 RH Map13213.71UniSTS
G17687  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,522,143 - 74,522,362UniSTSGRCh37
Build 361373,420,144 - 73,420,363RGDNCBI36
Celera1355,420,876 - 55,421,095RGD
Cytogenetic Map13q22UniSTS
HuRef1355,220,098 - 55,220,317UniSTS
123m6REV  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,393,681 - 74,393,896UniSTSGRCh37
Build 361373,291,682 - 73,291,897RGDNCBI36
Celera1355,292,457 - 55,292,672RGD
Cytogenetic Map13q22UniSTS
HuRef1355,091,385 - 55,091,600UniSTS
308d14REV  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,330,565 - 74,330,691UniSTSGRCh37
Build 361373,228,566 - 73,228,692RGDNCBI36
Celera1355,229,366 - 55,229,492RGD
Cytogenetic Map13q22UniSTS
HuRef1355,027,999 - 55,028,125UniSTS
343d16FWD  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,438,813 - 74,438,892UniSTSGRCh37
Build 361373,336,814 - 73,336,893RGDNCBI36
Celera1355,337,559 - 55,337,638RGD
Cytogenetic Map13q22UniSTS
HuRef1355,136,602 - 55,136,681UniSTS
374l18REV  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,294,983 - 74,295,231UniSTSGRCh37
Build 361373,192,984 - 73,193,232RGDNCBI36
Celera1355,193,801 - 55,194,049RGD
Cytogenetic Map13q22UniSTS
HuRef1354,992,454 - 54,992,702UniSTS
413n5FWD  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,439,094 - 74,439,257UniSTSGRCh37
Build 361373,337,095 - 73,337,258RGDNCBI36
Celera1355,337,840 - 55,338,003RGD
Cytogenetic Map13q22UniSTS
HuRef1355,136,883 - 55,137,046UniSTS
413n5REV  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,594,384 - 74,594,554UniSTSGRCh37
Build 361373,492,385 - 73,492,555RGDNCBI36
Celera1355,493,047 - 55,493,217RGD
Cytogenetic Map13q22UniSTS
HuRef1355,292,283 - 55,292,453UniSTS
511g14FWD  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,321,767 - 74,321,876UniSTSGRCh37
Build 361373,219,768 - 73,219,877RGDNCBI36
Celera1355,220,569 - 55,220,678RGD
Cytogenetic Map13q22UniSTS
HuRef1355,019,201 - 55,019,310UniSTS
KLF12  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371374,420,190 - 74,420,405UniSTSGRCh37
Celera1355,318,937 - 55,319,152UniSTS
HuRef1355,117,730 - 55,117,945UniSTS
D13S166  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13q22UniSTS
Marshfield Genetic Map1355.31UniSTS
Genethon Genetic Map1357.3UniSTS
deCODE Assembly Map1369.73UniSTS
Whitehead-YAC Contig Map13 UniSTS
D13S156  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13q22UniSTS
Marshfield Genetic Map1355.85UniSTS
Genethon Genetic Map1357.3UniSTS
deCODE Assembly Map1369.73UniSTS
GeneMap99-GB4 RH Map13213.71UniSTS
Whitehead-RH Map13193.2UniSTS
Whitehead-YAC Contig Map13 UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 263 863 73 41 618 42 821 168 383 80 137 104 3 13 737
Low 2140 1911 1634 574 1092 415 3530 2022 3347 330 1304 1485 168 1 1191 2050 2 2
Below cutoff 29 217 18 9 225 8 3 5 4 7 13 16 3 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF113122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF330041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH010423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI949908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL138713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL139036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL158054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL159972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL160032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL353660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL356319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF515580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ834616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB125574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF546212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000377669   ⟹   ENSP00000366897
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1373,686,089 - 74,133,929 (-)Ensembl
RefSeq Acc Id: ENST00000472022
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1373,812,873 - 73,995,056 (-)Ensembl
RefSeq Acc Id: ENST00000703967   ⟹   ENSP00000515592
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1373,686,089 - 74,134,404 (-)Ensembl
RefSeq Acc Id: NM_001400136   ⟹   NP_001387065
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,134,404 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,356,367 (-)NCBI
RefSeq Acc Id: NM_001400139   ⟹   NP_001387068
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,306,045 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,528,039 (-)NCBI
RefSeq Acc Id: NM_001400141   ⟹   NP_001387070
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,096 - 74,026,888 (-)NCBI
T2T-CHM13v2.01372,907,701 - 73,248,541 (-)NCBI
RefSeq Acc Id: NM_001400146   ⟹   NP_001387075
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,133,929 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,355,892 (-)NCBI
RefSeq Acc Id: NM_001400147   ⟹   NP_001387076
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,134,404 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,356,367 (-)NCBI
RefSeq Acc Id: NM_001400148   ⟹   NP_001387077
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,133,929 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,355,892 (-)NCBI
RefSeq Acc Id: NM_001400149   ⟹   NP_001387078
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,134,404 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,356,367 (-)NCBI
RefSeq Acc Id: NM_001400150   ⟹   NP_001387079
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,134,404 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,356,367 (-)NCBI
RefSeq Acc Id: NM_001400151   ⟹   NP_001387080
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,133,929 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,355,892 (-)NCBI
RefSeq Acc Id: NM_001400152   ⟹   NP_001387081
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,133,929 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,355,892 (-)NCBI
RefSeq Acc Id: NM_001400153   ⟹   NP_001387082
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,306,045 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,528,039 (-)NCBI
RefSeq Acc Id: NM_007249   ⟹   NP_009180
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,133,929 (-)NCBI
GRCh371374,260,149 - 74,708,400 (-)NCBI
Build 361373,158,150 - 73,606,067 (-)NCBI Archive
HuRef1354,957,615 - 55,405,960 (-)ENTREZGENE
CHM1_11374,227,338 - 74,675,586 (-)NCBI
T2T-CHM13v2.01372,907,694 - 73,355,892 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534907   ⟹   XP_011533209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 73,995,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534908   ⟹   XP_011533210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 73,995,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534909   ⟹   XP_011533211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,168,326 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534910   ⟹   XP_011533212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 73,953,938 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534911   ⟹   XP_011533213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 73,945,220 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047430082   ⟹   XP_047286038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,134,404 (-)NCBI
RefSeq Acc Id: XM_047430083   ⟹   XP_047286039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,134,404 (-)NCBI
RefSeq Acc Id: XM_047430084   ⟹   XP_047286040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381373,686,089 - 74,133,929 (-)NCBI
RefSeq Acc Id: XM_054374083   ⟹   XP_054230058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,216,730 (-)NCBI
RefSeq Acc Id: XM_054374084   ⟹   XP_054230059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,216,730 (-)NCBI
RefSeq Acc Id: XM_054374085   ⟹   XP_054230060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,390,259 (-)NCBI
RefSeq Acc Id: XM_054374086   ⟹   XP_054230061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,175,603 (-)NCBI
RefSeq Acc Id: XM_054374087   ⟹   XP_054230062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,356,367 (-)NCBI
RefSeq Acc Id: XM_054374088   ⟹   XP_054230063
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,166,888 (-)NCBI
RefSeq Acc Id: XM_054374089   ⟹   XP_054230064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,356,367 (-)NCBI
RefSeq Acc Id: XM_054374090   ⟹   XP_054230065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01372,907,694 - 73,355,892 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387065 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387070 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387075 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387076 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387077 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387078 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387079 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387080 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387081 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387082 (Get FASTA)   NCBI Sequence Viewer  
  NP_009180 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533209 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533210 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533211 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533212 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533213 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286038 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286039 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286040 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230058 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230059 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230060 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230061 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230062 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230063 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230064 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230065 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF14863 (Get FASTA)   NCBI Sequence Viewer  
  AAF29086 (Get FASTA)   NCBI Sequence Viewer  
  AAH19680 (Get FASTA)   NCBI Sequence Viewer  
  AAK12082 (Get FASTA)   NCBI Sequence Viewer  
  AAL37478 (Get FASTA)   NCBI Sequence Viewer  
  BAF84086 (Get FASTA)   NCBI Sequence Viewer  
  CAB46982 (Get FASTA)   NCBI Sequence Viewer  
  CAH05523 (Get FASTA)   NCBI Sequence Viewer  
  CCO02798 (Get FASTA)   NCBI Sequence Viewer  
  EAW80528 (Get FASTA)   NCBI Sequence Viewer  
  EAW80529 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000366897
  ENSP00000366897.2
  ENSP00000515592
  ENSP00000515592.1
GenBank Protein Q9Y4X4 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_009180   ⟸   NM_007249
- Peptide Label: isoform 1
- UniProtKB: Q5VZM7 (UniProtKB/Swiss-Prot),   L0R3J4 (UniProtKB/Swiss-Prot),   A8K5T2 (UniProtKB/Swiss-Prot),   Q9UHZ0 (UniProtKB/Swiss-Prot),   Q9Y4X4 (UniProtKB/Swiss-Prot),   Q8WWI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011533211   ⟸   XM_011534909
- Peptide Label: isoform X3
- UniProtKB: Q5VZM7 (UniProtKB/Swiss-Prot),   L0R3J4 (UniProtKB/Swiss-Prot),   A8K5T2 (UniProtKB/Swiss-Prot),   Q9UHZ0 (UniProtKB/Swiss-Prot),   Q9Y4X4 (UniProtKB/Swiss-Prot),   Q8WWI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011533209   ⟸   XM_011534907
- Peptide Label: isoform X1
- UniProtKB: Q8WWI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011533212   ⟸   XM_011534910
- Peptide Label: isoform X4
- UniProtKB: Q8WWI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011533213   ⟸   XM_011534911
- Peptide Label: isoform X6
- UniProtKB: Q8WWI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011533210   ⟸   XM_011534908
- Peptide Label: isoform X2
- UniProtKB: Q8WWI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000366897   ⟸   ENST00000377669
RefSeq Acc Id: NP_001387082   ⟸   NM_001400153
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001387068   ⟸   NM_001400139
- Peptide Label: isoform 1
- UniProtKB: Q9Y4X4 (UniProtKB/Swiss-Prot),   Q5VZM7 (UniProtKB/Swiss-Prot),   L0R3J4 (UniProtKB/Swiss-Prot),   A8K5T2 (UniProtKB/Swiss-Prot),   Q9UHZ0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001387076   ⟸   NM_001400147
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001387079   ⟸   NM_001400150
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001387078   ⟸   NM_001400149
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001387065   ⟸   NM_001400136
- Peptide Label: isoform 1
- UniProtKB: Q9Y4X4 (UniProtKB/Swiss-Prot),   Q5VZM7 (UniProtKB/Swiss-Prot),   L0R3J4 (UniProtKB/Swiss-Prot),   A8K5T2 (UniProtKB/Swiss-Prot),   Q9UHZ0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047286038   ⟸   XM_047430082
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047286039   ⟸   XM_047430083
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001387077   ⟸   NM_001400148
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001387080   ⟸   NM_001400151
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001387081   ⟸   NM_001400152
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001387075   ⟸   NM_001400146
- Peptide Label: isoform 2
RefSeq Acc Id: XP_047286040   ⟸   XM_047430084
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001387070   ⟸   NM_001400141
- Peptide Label: isoform 1
- UniProtKB: Q9Y4X4 (UniProtKB/Swiss-Prot),   Q5VZM7 (UniProtKB/Swiss-Prot),   L0R3J4 (UniProtKB/Swiss-Prot),   A8K5T2 (UniProtKB/Swiss-Prot),   Q9UHZ0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000515592   ⟸   ENST00000703967
RefSeq Acc Id: XP_054230060   ⟸   XM_054374085
- Peptide Label: isoform X3
- UniProtKB: Q9Y4X4 (UniProtKB/Swiss-Prot),   Q5VZM7 (UniProtKB/Swiss-Prot),   L0R3J4 (UniProtKB/Swiss-Prot),   A8K5T2 (UniProtKB/Swiss-Prot),   Q9UHZ0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054230062   ⟸   XM_054374087
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054230064   ⟸   XM_054374089
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054230065   ⟸   XM_054374090
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054230058   ⟸   XM_054374083
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054230059   ⟸   XM_054374084
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054230061   ⟸   XM_054374086
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054230063   ⟸   XM_054374088
- Peptide Label: isoform X6
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y4X4-F1-model_v2 AlphaFold Q9Y4X4 1-402 view protein structure

Promoters
RGD ID:6790925
Promoter ID:HG_KWN:18100
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_007249,   UC001VJG.2,   UC010AEQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361373,605,886 - 73,607,317 (-)MPROMDB
RGD ID:7226579
Promoter ID:EPDNEW_H19034
Type:initiation region
Name:KLF12_2
Description:Kruppel like factor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19035  EPDNEW_H19036  EPDNEW_H19037  EPDNEW_H19039  EPDNEW_H19038  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381374,026,884 - 74,026,944EPDNEW
RGD ID:7226577
Promoter ID:EPDNEW_H19035
Type:initiation region
Name:KLF12_6
Description:Kruppel like factor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19034  EPDNEW_H19036  EPDNEW_H19037  EPDNEW_H19039  EPDNEW_H19038  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381374,132,089 - 74,132,149EPDNEW
RGD ID:7226581
Promoter ID:EPDNEW_H19036
Type:initiation region
Name:KLF12_4
Description:Kruppel like factor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19035  EPDNEW_H19034  EPDNEW_H19037  EPDNEW_H19039  EPDNEW_H19038  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381374,133,784 - 74,133,844EPDNEW
RGD ID:7226583
Promoter ID:EPDNEW_H19037
Type:initiation region
Name:KLF12_3
Description:Kruppel like factor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19035  EPDNEW_H19034  EPDNEW_H19036  EPDNEW_H19039  EPDNEW_H19038  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381374,134,139 - 74,134,199EPDNEW
RGD ID:7226589
Promoter ID:EPDNEW_H19038
Type:initiation region
Name:KLF12_5
Description:Kruppel like factor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19035  EPDNEW_H19034  EPDNEW_H19036  EPDNEW_H19037  EPDNEW_H19039  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381374,168,326 - 74,168,386EPDNEW
RGD ID:7226585
Promoter ID:EPDNEW_H19039
Type:initiation region
Name:KLF12_1
Description:Kruppel like factor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19035  EPDNEW_H19034  EPDNEW_H19036  EPDNEW_H19037  EPDNEW_H19038  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381374,306,045 - 74,306,105EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:6346 AgrOrtholog
COSMIC KLF12 COSMIC
Ensembl Genes ENSG00000118922 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000377669 ENTREZGENE
  ENST00000377669.7 UniProtKB/Swiss-Prot
  ENST00000703967 ENTREZGENE
  ENST00000703967.1 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000118922 GTEx
HGNC ID HGNC:6346 ENTREZGENE
Human Proteome Map KLF12 Human Proteome Map
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:11278 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 11278 ENTREZGENE
OMIM 607531 OMIM
PANTHER KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23235:SF56 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA30132 PharmGKB
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K5T2 ENTREZGENE
  KLF12_HUMAN UniProtKB/Swiss-Prot
  L0R3J4 ENTREZGENE
  Q5VZM7 ENTREZGENE
  Q8WWI3 ENTREZGENE, UniProtKB/TrEMBL
  Q9UHZ0 ENTREZGENE
  Q9Y4X4 ENTREZGENE
UniProt Secondary A8K5T2 UniProtKB/Swiss-Prot
  L0R3J4 UniProtKB/Swiss-Prot
  Q5VZM7 UniProtKB/Swiss-Prot
  Q9UHZ0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-11 KLF12  KLF transcription factor 12  KLF12  Kruppel like factor 12  Symbol and/or name change 19259463 PROVISIONAL
2016-06-07 KLF12  Kruppel like factor 12  KLF12  Kruppel-like factor 12  Symbol and/or name change 5135510 APPROVED