Anks1 (ankyrin repeat and SAM domain containing 1) - Rat Genome Database

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Gene: Anks1 (ankyrin repeat and SAM domain containing 1) Mus musculus
Analyze
Symbol: Anks1
Name: ankyrin repeat and SAM domain containing 1
RGD ID: 1319382
MGI Page MGI
Description: Enables ephrin receptor binding activity. Involved in ephrin receptor signaling pathway; neuron remodeling; and substrate-dependent cell migration. Acts upstream of or within negative regulation of ubiquitin-dependent protein catabolic process and regulation of ephrin receptor signaling pathway. Located in neuron projection. Is expressed in several structures, including genitourinary system; gut gland; nervous system; olfactory epithelium; and trachea. Orthologous to human ANKS1A (ankyrin repeat and sterile alpha motif domain containing 1A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Anks1a; ankyrin repeat and SAM domain-containing protein 1A; MGC59413; mKIAA0229; O; Odin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,128,273 - 28,281,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,128,280 - 28,281,749 (+)EnsemblGRCm39 Ensembl
GRCm381727,909,304 - 28,062,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,909,306 - 28,062,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv371728,046,285 - 28,199,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,636,929 - 27,790,226 (+)NCBIMGSCv36mm8
Celera1728,462,415 - 28,615,993 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,ISO)
neuron projection  (IDA)
nucleoplasm  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12439753   PMID:12520002   PMID:14610273   PMID:15345747   PMID:15489334   PMID:15500253   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17875921   PMID:17967808   PMID:18799693   PMID:20100865   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24194600   PMID:26018557   PMID:27507650  
PMID:27619642   PMID:28671696   PMID:29097665   PMID:29749928   PMID:30759972   PMID:31511520   PMID:33504787   PMID:34321999   PMID:38123547   PMID:38355793  


Genomics

Comparative Map Data
Anks1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,128,273 - 28,281,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,128,280 - 28,281,749 (+)EnsemblGRCm39 Ensembl
GRCm381727,909,304 - 28,062,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,909,306 - 28,062,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv371728,046,285 - 28,199,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,636,929 - 27,790,226 (+)NCBIMGSCv36mm8
Celera1728,462,415 - 28,615,993 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.6NCBI
ANKS1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38634,889,255 - 35,097,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl634,889,255 - 35,091,406 (+)EnsemblGRCh38hg38GRCh38
GRCh37634,857,032 - 35,059,183 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,965,016 - 35,167,168 (+)NCBINCBI36Build 36hg18NCBI36
Celera636,411,475 - 36,613,603 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,579,837 - 34,781,340 (+)NCBIHuRef
CHM1_1634,859,101 - 35,061,139 (+)NCBICHM1_1
T2T-CHM13v2.0634,712,070 - 34,920,800 (+)NCBIT2T-CHM13v2.0
Anks1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,965,421 - 6,118,875 (+)NCBIGRCr8
mRatBN7.2205,963,658 - 6,117,139 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,963,678 - 6,117,148 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx206,676,254 - 6,829,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,038,050 - 6,191,557 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,517,744 - 6,671,160 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,484,550 - 7,636,498 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,484,550 - 7,636,497 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,686,580 - 9,840,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,121,316 - 6,274,822 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,121,537 - 6,273,689 (+)NCBI
Celera207,524,771 - 7,677,018 (+)NCBICelera
Cytogenetic Map20p12NCBI
Anks1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,916,598 - 3,070,771 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554372,916,598 - 3,070,771 (+)NCBIChiLan1.0ChiLan1.0
ANKS1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,356,394 - 49,559,747 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,223,781 - 45,427,235 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0634,450,695 - 34,653,881 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1635,613,582 - 35,750,581 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl635,548,124 - 35,776,185 (+)Ensemblpanpan1.1panPan2
ANKS1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,095,394 - 4,274,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,095,490 - 4,272,654 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,110,661 - 4,289,686 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,431,356 - 4,611,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,431,333 - 4,611,277 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,091,532 - 4,270,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,172,585 - 4,351,607 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,272,622 - 4,451,697 (+)NCBIUU_Cfam_GSD_1.0
Anks1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494639,759,615 - 39,865,169 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647624,092,759 - 24,200,612 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647624,093,838 - 24,200,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKS1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,812,920 - 30,995,360 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1730,812,925 - 30,995,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,661,335 - 35,766,115 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKS1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,036,665 - 37,229,906 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1737,036,066 - 37,155,596 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604434,804,936 - 34,999,631 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anks1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475422,309,812 - 22,463,170 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475422,306,363 - 22,463,273 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Anks1
30 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3410
Count of miRNA genes:673
Interacting mature miRNAs:827
Transcripts:ENSMUST00000025058, ENSMUST00000088027, ENSMUST00000114842, ENSMUST00000139173
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse

Markers in Region
12.MMHAP59FRD9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381728,013,180 - 28,013,332UniSTSGRCm38
MGSCv371728,150,125 - 28,150,277UniSTSGRCm37
Celera1728,566,393 - 28,566,545UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead_YAC17 UniSTS
UniSTS:237603  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381727,931,862 - 27,931,965UniSTSGRCm38
MGSCv371728,068,807 - 28,068,910UniSTSGRCm37
Celera1728,484,737 - 28,484,840UniSTS
Cytogenetic Map17A3.3UniSTS
D17Mit44  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A3.3UniSTS
cM Map1715.0UniSTS
Whitehead Genetic175.5UniSTS
Whitehead/MRC_RH17342.17UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001425247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000025058   ⟹   ENSMUSP00000025058
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,128,346 - 28,281,573 (+)Ensembl
GRCm38.p6 Ensembl1727,909,372 - 28,062,599 (+)Ensembl
Ensembl Acc Id: ENSMUST00000088027   ⟹   ENSMUSP00000085344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,128,291 - 28,281,573 (+)Ensembl
GRCm38.p6 Ensembl1727,909,317 - 28,062,599 (+)Ensembl
Ensembl Acc Id: ENSMUST00000114842   ⟹   ENSMUSP00000110491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,128,280 - 28,281,749 (+)Ensembl
GRCm38.p6 Ensembl1727,909,306 - 28,062,775 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139173   ⟹   ENSMUSP00000156518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,226,319 - 28,281,573 (+)Ensembl
GRCm38.p6 Ensembl1728,007,345 - 28,062,599 (+)Ensembl
Ensembl Acc Id: ENSMUST00000232742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,128,339 - 28,195,805 (+)Ensembl
GRCm38.p6 Ensembl1727,909,365 - 27,976,831 (+)Ensembl
Ensembl Acc Id: ENSMUST00000232769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,276,415 - 28,278,270 (+)Ensembl
GRCm38.p6 Ensembl1728,057,441 - 28,059,296 (+)Ensembl
Ensembl Acc Id: ENSMUST00000232872   ⟹   ENSMUSP00000156946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,261,589 - 28,281,571 (+)Ensembl
GRCm38.p6 Ensembl1728,042,615 - 28,062,597 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233058   ⟹   ENSMUSP00000156525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,261,415 - 28,270,487 (+)Ensembl
GRCm38.p6 Ensembl1728,042,441 - 28,051,513 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233298   ⟹   ENSMUSP00000156742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,260,711 - 28,270,704 (+)Ensembl
GRCm38.p6 Ensembl1728,041,737 - 28,051,730 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233309   ⟹   ENSMUSP00000156473
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,273,307 - 28,280,010 (+)Ensembl
GRCm38.p6 Ensembl1728,054,333 - 28,061,036 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233525   ⟹   ENSMUSP00000156466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,128,307 - 28,281,737 (+)Ensembl
GRCm38.p6 Ensembl1727,909,333 - 28,062,763 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233866   ⟹   ENSMUSP00000156529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,128,532 - 28,132,772 (+)Ensembl
GRCm38.p6 Ensembl1727,909,558 - 27,913,798 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233869   ⟹   ENSMUSP00000156843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,259,749 - 28,271,692 (+)Ensembl
GRCm38.p6 Ensembl1728,040,775 - 28,052,718 (+)Ensembl
RefSeq Acc Id: NM_001286040   ⟹   NP_001272969
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,280 - 28,281,753 (+)NCBI
GRCm381727,909,306 - 28,062,779 (+)NCBI
Celera1728,462,381 - 28,616,135 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286041   ⟹   NP_001272970
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,280 - 28,281,753 (+)NCBI
GRCm381727,909,306 - 28,062,779 (+)NCBI
Celera1728,462,381 - 28,616,135 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374802   ⟹   NP_001361731
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,317 - 28,281,749 (+)NCBI
GRCm381727,909,343 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001425247   ⟹   NP_001412176
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,317 - 28,281,749 (+)NCBI
RefSeq Acc Id: NM_181413   ⟹   NP_852078
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,280 - 28,281,753 (+)NCBI
GRCm381727,909,306 - 28,062,779 (+)NCBI
MGSCv371728,046,285 - 28,199,582 (+)RGD
Celera1728,462,381 - 28,616,135 (+)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524087   ⟹   XP_006524150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,273 - 28,281,573 (+)NCBI
GRCm381727,909,304 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524088   ⟹   XP_006524151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,273 - 28,281,573 (+)NCBI
GRCm381727,909,304 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524089   ⟹   XP_006524152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,129,903 - 28,281,749 (+)NCBI
GRCm381727,910,936 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524091   ⟹   XP_006524154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,226,455 - 28,281,573 (+)NCBI
GRCm381728,007,481 - 28,062,599 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249682   ⟹   XP_030105542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,532 - 28,281,749 (+)NCBI
GRCm381727,909,558 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249683   ⟹   XP_030105543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,531 - 28,281,749 (+)NCBI
GRCm381727,909,560 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249685   ⟹   XP_030105545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,128,829 - 28,281,749 (+)NCBI
GRCm381727,909,855 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249686   ⟹   XP_030105546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,226,239 - 28,281,576 (+)NCBI
GRCm381728,007,267 - 28,062,602 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249687   ⟹   XP_030105547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,257,308 - 28,281,749 (+)NCBI
GRCm381728,038,336 - 28,062,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160515   ⟹   XP_036016408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,226,244 - 28,281,749 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160516   ⟹   XP_036016409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,226,455 - 28,281,573 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160517   ⟹   XP_036016410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,226,487 - 28,281,576 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160518   ⟹   XP_036016411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,259,766 - 28,281,576 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001272969 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272970 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361731 (Get FASTA)   NCBI Sequence Viewer  
  NP_001412176 (Get FASTA)   NCBI Sequence Viewer  
  NP_852078 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524150 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524151 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524152 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524154 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105542 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105543 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105545 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105546 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105547 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016408 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016409 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016410 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016411 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH10633 (Get FASTA)   NCBI Sequence Viewer  
  AAH50847 (Get FASTA)   NCBI Sequence Viewer  
  AAH57331 (Get FASTA)   NCBI Sequence Viewer  
  BAC97904 (Get FASTA)   NCBI Sequence Viewer  
  BAE27811 (Get FASTA)   NCBI Sequence Viewer  
  BAE41395 (Get FASTA)   NCBI Sequence Viewer  
  EDL22556 (Get FASTA)   NCBI Sequence Viewer  
  EDL22557 (Get FASTA)   NCBI Sequence Viewer  
  EDL22558 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025058
  ENSMUSP00000085344
  ENSMUSP00000085344.6
  ENSMUSP00000110491
  ENSMUSP00000110491.2
  ENSMUSP00000156466
  ENSMUSP00000156518
  ENSMUSP00000156946
GenBank Protein P59672 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_852078   ⟸   NM_181413
- Peptide Label: isoform 3
- UniProtKB: Q6ZQG0 (UniProtKB/Swiss-Prot),   P59672 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272969   ⟸   NM_001286040
- Peptide Label: isoform 1
- UniProtKB: Q3UHP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272970   ⟸   NM_001286041
- Peptide Label: isoform 2
- UniProtKB: P59672 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524150   ⟸   XM_006524087
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006524151   ⟸   XM_006524088
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006524152   ⟸   XM_006524089
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006524154   ⟸   XM_006524091
- Peptide Label: isoform X8
- UniProtKB: A0A3B2W7H4 (UniProtKB/TrEMBL),   Q3TE53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030105542   ⟸   XM_030249682
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030105543   ⟸   XM_030249683
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030105545   ⟸   XM_030249685
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030105546   ⟸   XM_030249686
- Peptide Label: isoform X8
- UniProtKB: A0A3B2W7H4 (UniProtKB/TrEMBL),   Q3TE53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105547   ⟸   XM_030249687
- Peptide Label: isoform X10
- UniProtKB: A0A3B2W4H6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001361731   ⟸   NM_001374802
- Peptide Label: isoform 4
- UniProtKB: A0A3B2WAQ7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000156518   ⟸   ENSMUST00000139173
Ensembl Acc Id: ENSMUSP00000085344   ⟸   ENSMUST00000088027
Ensembl Acc Id: ENSMUSP00000156466   ⟸   ENSMUST00000233525
Ensembl Acc Id: ENSMUSP00000156525   ⟸   ENSMUST00000233058
Ensembl Acc Id: ENSMUSP00000156473   ⟸   ENSMUST00000233309
Ensembl Acc Id: ENSMUSP00000156742   ⟸   ENSMUST00000233298
Ensembl Acc Id: ENSMUSP00000156843   ⟸   ENSMUST00000233869
Ensembl Acc Id: ENSMUSP00000156529   ⟸   ENSMUST00000233866
Ensembl Acc Id: ENSMUSP00000110491   ⟸   ENSMUST00000114842
Ensembl Acc Id: ENSMUSP00000156946   ⟸   ENSMUST00000232872
Ensembl Acc Id: ENSMUSP00000025058   ⟸   ENSMUST00000025058
RefSeq Acc Id: XP_036016408   ⟸   XM_036160515
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036016409   ⟸   XM_036160516
- Peptide Label: isoform X7
- UniProtKB: Q3TE53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016410   ⟸   XM_036160517
- Peptide Label: isoform X7
- UniProtKB: Q3TE53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016411   ⟸   XM_036160518
- Peptide Label: isoform X9
- UniProtKB: A0A3B2W4H6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001412176   ⟸   NM_001425247
- Peptide Label: isoform 5
Protein Domains
PID   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59672-F1-model_v2 AlphaFold P59672 1-1150 view protein structure

Promoters
RGD ID:13675316
Promoter ID:EPDNEW_M21807
Type:initiation region
Name:Anks1_1
Description:Mus musculus ankyrin repeat and SAM domain containing 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21808  EPDNEW_M21809  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381727,909,382 - 27,909,442EPDNEW
RGD ID:13675318
Promoter ID:EPDNEW_M21808
Type:multiple initiation site
Name:Anks1_2
Description:Mus musculus ankyrin repeat and SAM domain containing 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21807  EPDNEW_M21809  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381728,007,492 - 28,007,552EPDNEW
RGD ID:13675320
Promoter ID:EPDNEW_M21809
Type:single initiation site
Name:Anks1_3
Description:Mus musculus ankyrin repeat and SAM domain containing 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21807  EPDNEW_M21808  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381728,045,413 - 28,045,473EPDNEW
RGD ID:6827830
Promoter ID:MM_KWN:22828
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000097358,   ENSMUST00000114848,   UC008BPV.1,   UC008BPW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,046,026 - 28,046,552 (+)MPROMDB
RGD ID:6827827
Promoter ID:MM_KWN:22830
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung
Transcripts:UC008BPY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,144,126 - 28,144,626 (+)MPROMDB
RGD ID:6827826
Promoter ID:MM_KWN:22832
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Lung
Transcripts:UC008BPZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,178,736 - 28,179,487 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2446180 AgrOrtholog
Ensembl Genes ENSMUSG00000024219 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000025058 ENTREZGENE
  ENSMUST00000088027 ENTREZGENE
  ENSMUST00000088027.7 UniProtKB/Swiss-Prot
  ENSMUST00000114842 ENTREZGENE
  ENSMUST00000114842.9 UniProtKB/Swiss-Prot
  ENSMUST00000139173 ENTREZGENE
  ENSMUST00000232872 ENTREZGENE
  ENSMUST00000233525 ENTREZGENE
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot
  1.25.40.20 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
InterPro ANKS1/Caskin UniProtKB/Swiss-Prot
  Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PTB/PI_dom UniProtKB/Swiss-Prot
  SAM UniProtKB/Swiss-Prot
  SAM/pointed_sf UniProtKB/Swiss-Prot
  SAM_ANKS1_repeat1 UniProtKB/Swiss-Prot
  SAM_ANKS1_repeat2 UniProtKB/Swiss-Prot
KEGG Report mmu:224650 UniProtKB/Swiss-Prot
MGD MGI:2446180 ENTREZGENE
NCBI Gene 224650 ENTREZGENE
PANTHER ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR24174:SF4 UniProtKB/Swiss-Prot
Pfam Ank_2 UniProtKB/Swiss-Prot
  PID UniProtKB/Swiss-Prot
  SAM_1 UniProtKB/Swiss-Prot
PhenoGen Anks1 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot
  PID UniProtKB/Swiss-Prot
  SAM_DOMAIN UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot
  PTB UniProtKB/Swiss-Prot
  SAM UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF47769 UniProtKB/Swiss-Prot
  SSF48403 UniProtKB/Swiss-Prot
UniProt A0A3B2W3P4_MOUSE UniProtKB/TrEMBL
  A0A3B2W446_MOUSE UniProtKB/TrEMBL
  A0A3B2W4B0_MOUSE UniProtKB/TrEMBL
  A0A3B2W4H6 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B2W7E6_MOUSE UniProtKB/TrEMBL
  A0A3B2W7H4 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B2WAQ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B2WCH8_MOUSE UniProtKB/TrEMBL
  ANS1A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TE53 ENTREZGENE, UniProtKB/TrEMBL
  Q3UHP6 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZQG0 ENTREZGENE
  Q91VR4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6ZQG0 UniProtKB/Swiss-Prot