Ctc1 (CTS telomere maintenance complex component 1) - Rat Genome Database

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Gene: Ctc1 (CTS telomere maintenance complex component 1) Mus musculus
Analyze
Symbol: Ctc1
Name: CTS telomere maintenance complex component 1
RGD ID: 1319365
MGI Page MGI
Description: Enables single-stranded DNA binding activity. Involved in positive regulation of DNA replication. Acts upstream of or within several processes, including hematopoietic or lymphoid organ development; hematopoietic stem cell proliferation; and replicative senescence. Located in chromosome, telomeric region and nucleus. Part of CST complex. Is expressed in genitourinary system. Orthologous to human CTC1 (CST telomere replication complex component 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500010J02Rik; AAF-132; AAF132; alpha accessory factor 132; alpha-accessory factor of 132 kDa; conserved telomere maintenance component 1; CST complex subunit CTC1; RP23-19I2.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,906,014 - 68,927,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,906,737 - 68,927,299 (+)EnsemblGRCm39 Ensembl
GRCm381169,015,188 - 69,036,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,015,911 - 69,036,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,829,413 - 68,849,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,832,308 - 68,852,665 (+)NCBIMGSCv36mm8
Celera1175,959,426 - 75,979,997 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17062627   PMID:18287559   PMID:18799693   PMID:19119139   PMID:19854130   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22531781   PMID:31138677  
PMID:32325033  


Genomics

Comparative Map Data
Ctc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,906,014 - 68,927,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,906,737 - 68,927,299 (+)EnsemblGRCm39 Ensembl
GRCm381169,015,188 - 69,036,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,015,911 - 69,036,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,829,413 - 68,849,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,832,308 - 68,852,665 (+)NCBIMGSCv36mm8
Celera1175,959,426 - 75,979,997 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.29NCBI
CTC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,224,815 - 8,248,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,224,815 - 8,248,058 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,128,133 - 8,151,374 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,070,918 - 8,092,138 (-)NCBINCBI36Build 36hg18NCBI36
Celera178,156,583 - 8,180,276 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,023,720 - 8,047,049 (-)NCBIHuRef
CHM1_1178,137,269 - 8,160,346 (-)NCBICHM1_1
T2T-CHM13v2.0178,131,045 - 8,154,277 (-)NCBIT2T-CHM13v2.0
Ctc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,212,537 - 54,234,146 (+)NCBIGRCr8
mRatBN7.21053,714,614 - 53,735,298 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,714,644 - 53,735,298 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,376,423 - 58,397,143 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01057,865,018 - 57,885,738 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,373,291 - 53,393,965 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,596,172 - 55,616,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,596,148 - 55,616,889 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,339,019 - 55,359,676 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,768,182 - 55,788,836 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1052,880,876 - 52,901,530 (+)NCBICelera
Cytogenetic Map10q24NCBI
Ctc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,673,128 - 8,702,165 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,673,069 - 8,700,730 (+)NCBIChiLan1.0ChiLan1.0
CTC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,505,396 - 65,532,722 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,314,490 - 70,342,197 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,410,385 - 43,433,784 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,142,864 - 48,165,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,142,864 - 48,165,537 (+)Ensemblpanpan1.1panPan2
CTC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,033,474 - 33,055,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,033,596 - 33,055,142 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,169,608 - 33,191,164 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,136,544 - 33,158,103 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,136,546 - 33,158,213 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,103,279 - 33,124,855 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,059,047 - 33,080,605 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,239,021 - 33,260,583 (-)NCBIUU_Cfam_GSD_1.0
Ctc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,982,723 - 48,002,429 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,454,508 - 1,476,593 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,456,911 - 1,476,331 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,428,185 - 53,454,096 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,427,807 - 53,454,149 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,903,625 - 55,929,532 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,594,493 - 7,618,202 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,594,219 - 7,615,754 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605913,782,698 - 13,803,943 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,795,193 - 10,819,613 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,795,848 - 10,819,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctc1
931 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3363
Count of miRNA genes:821
Interacting mature miRNAs:1118
Transcripts:ENSMUST00000021278, ENSMUST00000116359, ENSMUST00000123871, ENSMUST00000135611, ENSMUST00000143404, ENSMUST00000146621, ENSMUST00000152979, ENSMUST00000154126, ENSMUST00000161271, ENSMUST00000161384, ENSMUST00000161455, ENSMUST00000162256
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK005190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK176964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW047236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB854410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA327858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF166825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO044099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000021278   ⟹   ENSMUSP00000021278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,906,737 - 68,927,299 (+)Ensembl
GRCm38.p6 Ensembl1169,015,911 - 69,036,473 (+)Ensembl
RefSeq Acc Id: ENSMUST00000116359   ⟹   ENSMUSP00000112063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,906,923 - 68,927,296 (+)Ensembl
GRCm38.p6 Ensembl1169,016,097 - 69,036,470 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,919,884 - 68,922,379 (+)Ensembl
GRCm38.p6 Ensembl1169,029,058 - 69,031,553 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,906,752 - 68,915,985 (+)Ensembl
GRCm38.p6 Ensembl1169,015,926 - 69,025,159 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,924,701 - 68,926,647 (+)Ensembl
GRCm38.p6 Ensembl1169,033,875 - 69,035,821 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146621
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,906,960 - 68,913,589 (+)Ensembl
GRCm38.p6 Ensembl1169,016,134 - 69,022,763 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152979   ⟹   ENSMUSP00000125028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,906,912 - 68,927,299 (+)Ensembl
GRCm38.p6 Ensembl1169,016,086 - 69,036,473 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,922,060 - 68,925,774 (+)Ensembl
GRCm38.p6 Ensembl1169,031,234 - 69,034,948 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,925,705 - 68,927,006 (+)Ensembl
GRCm38.p6 Ensembl1169,034,879 - 69,036,180 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,918,498 - 68,920,022 (+)Ensembl
GRCm38.p6 Ensembl1169,027,672 - 69,029,196 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161455   ⟹   ENSMUSP00000124702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,906,780 - 68,927,296 (+)Ensembl
GRCm38.p6 Ensembl1169,015,954 - 69,036,470 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,925,347 - 68,926,632 (+)Ensembl
GRCm38.p6 Ensembl1169,034,521 - 69,035,806 (+)Ensembl
RefSeq Acc Id: NM_001013256   ⟹   NP_001013274
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,737 - 68,927,299 (+)NCBI
GRCm381169,015,911 - 69,036,473 (+)NCBI
MGSCv371168,829,413 - 68,849,975 (+)RGD
Celera1175,959,426 - 75,979,997 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001143790   ⟹   NP_001137262
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,737 - 68,927,299 (+)NCBI
GRCm381169,015,911 - 69,036,473 (+)NCBI
MGSCv371168,829,413 - 68,849,975 (+)RGD
Celera1175,959,426 - 75,979,997 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001281464   ⟹   NP_001268393
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,737 - 68,927,299 (+)NCBI
GRCm381169,015,911 - 69,036,473 (+)NCBI
Celera1175,959,426 - 75,979,997 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001281465   ⟹   NP_001268394
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,737 - 68,927,299 (+)NCBI
GRCm381169,015,911 - 69,036,473 (+)NCBI
Celera1175,959,426 - 75,979,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534088   ⟹   XP_006534151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,014 - 68,927,296 (+)NCBI
GRCm381169,015,188 - 69,036,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534089   ⟹   XP_006534152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,014 - 68,927,296 (+)NCBI
GRCm381169,015,188 - 69,036,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534092   ⟹   XP_006534155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,014 - 68,927,296 (+)NCBI
GRCm381169,015,188 - 69,036,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534093   ⟹   XP_006534156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,919,868 - 68,927,296 (+)NCBI
GRCm381169,029,042 - 69,036,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246267   ⟹   XP_030102127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,014 - 68,927,296 (+)NCBI
GRCm381169,015,188 - 69,036,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246268   ⟹   XP_030102128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,014 - 68,927,296 (+)NCBI
GRCm381169,015,188 - 69,036,470 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949499
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,014 - 68,927,296 (+)NCBI
GRCm381169,015,188 - 69,036,470 (+)NCBI
Sequence:
RefSeq Acc Id: XR_388517
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,906,014 - 68,921,832 (+)NCBI
GRCm381169,015,188 - 69,031,006 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001013274   ⟸   NM_001013256
- Peptide Label: isoform a
- UniProtKB: Q91WN0 (UniProtKB/Swiss-Prot),   Q8BRK2 (UniProtKB/Swiss-Prot),   Q6P9S2 (UniProtKB/Swiss-Prot),   Q3UKQ1 (UniProtKB/Swiss-Prot),   B2RW14 (UniProtKB/Swiss-Prot),   Q9CW32 (UniProtKB/Swiss-Prot),   Q5SUQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001137262   ⟸   NM_001143790
- Peptide Label: isoform c
- UniProtKB: Q5SUQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001268394   ⟸   NM_001281465
- Peptide Label: isoform b
- UniProtKB: Q5SUQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001268393   ⟸   NM_001281464
- Peptide Label: isoform d
- UniProtKB: E0CXE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534151   ⟸   XM_006534088
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534152   ⟸   XM_006534089
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006534155   ⟸   XM_006534092
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006534156   ⟸   XM_006534093
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030102127   ⟸   XM_030246267
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030102128   ⟸   XM_030246268
- Peptide Label: isoform X5
- UniProtKB: E0CXE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000125028   ⟸   ENSMUST00000152979
RefSeq Acc Id: ENSMUSP00000021278   ⟸   ENSMUST00000021278
RefSeq Acc Id: ENSMUSP00000124702   ⟸   ENSMUST00000161455
RefSeq Acc Id: ENSMUSP00000112063   ⟸   ENSMUST00000116359

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SUQ9-F1-model_v2 AlphaFold Q5SUQ9 1-1212 view protein structure

Promoters
RGD ID:6821837
Promoter ID:MM_KWN:8019
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000021278,   NM_001013256,   OTTMUST00000013289,   OTTMUST00000013294,   OTTMUST00000013295,   UC007JOW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,829,344 - 68,829,844 (+)MPROMDB
RGD ID:8675134
Promoter ID:EPDNEW_M15598
Type:single initiation site
Name:Ctc1_1
Description:Mus musculus CTS telomere maintenance complex component 1 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,020,907 - 69,020,967EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916214 AgrOrtholog
Ensembl Genes ENSMUSG00000020898 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021278 ENTREZGENE
  ENSMUST00000021278.14 UniProtKB/Swiss-Prot
  ENSMUST00000116359 ENTREZGENE
  ENSMUST00000116359.3 UniProtKB/Swiss-Prot
  ENSMUST00000152979.8 UniProtKB/TrEMBL
  ENSMUST00000161455 ENTREZGENE
  ENSMUST00000161455.8 UniProtKB/TrEMBL
InterPro CTC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTC1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68964 UniProtKB/Swiss-Prot
MGD MGI:1916214 ENTREZGENE
NCBI Gene 68964 ENTREZGENE
PANTHER CST COMPLEX SUBUNIT CTC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14865 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CTC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ctc1 PhenoGen
UniProt B2RW14 ENTREZGENE
  CTC1_MOUSE UniProtKB/Swiss-Prot
  E0CXE7 ENTREZGENE, UniProtKB/TrEMBL
  E0CXT1_MOUSE UniProtKB/TrEMBL
  Q3UKQ1 ENTREZGENE
  Q5SUQ9 ENTREZGENE
  Q6P9S2 ENTREZGENE
  Q8BRK2 ENTREZGENE
  Q91WN0 ENTREZGENE
  Q9CW32 ENTREZGENE
UniProt Secondary B2RW14 UniProtKB/Swiss-Prot
  Q3UKQ1 UniProtKB/Swiss-Prot
  Q6P9S2 UniProtKB/Swiss-Prot
  Q8BRK2 UniProtKB/Swiss-Prot
  Q91WN0 UniProtKB/Swiss-Prot
  Q9CW32 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-24 Ctc1  CTS telomere maintenance complex component 1  1500010J02Rik  RIKEN cDNA 1500010J02 gene  Symbol and/or name change 5135510 APPROVED