Ttf2 (transcription termination factor, RNA polymerase II) - Rat Genome Database

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Gene: Ttf2 (transcription termination factor, RNA polymerase II) Mus musculus
Analyze
Symbol: Ttf2
Name: transcription termination factor, RNA polymerase II
RGD ID: 1319324
MGI Page MGI
Description: Predicted to enable ATP-dependent activity, acting on DNA. Predicted to be involved in DNA repair. Predicted to act upstream of or within DNA-templated transcription termination; RNA splicing; and mRNA processing. Predicted to be located in cytosol. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus. Is expressed in cerebral cortex ventricular layer; olfactory cortex ventricular layer; and telencephalon ventricular layer. Orthologous to human TTF2 (transcription termination factor 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4632434F22Rik; 8030447N19; AV218430; RNA polymerase II termination factor; transcription release factor 2; transcription termination factor 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393100,846,176 - 100,877,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3100,846,176 - 100,876,979 (-)EnsemblGRCm39 Ensembl
GRCm383100,938,860 - 100,969,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3100,938,860 - 100,969,663 (-)EnsemblGRCm38mm10GRCm38
MGSCv373100,742,783 - 100,773,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363101,067,921 - 101,098,725 (-)NCBIMGSCv36mm8
Celera3103,146,966 - 103,178,082 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map343.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12765969   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16958665   PMID:20362542  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22167068   PMID:32325033   PMID:34321999   PMID:36114006  


Genomics

Comparative Map Data
Ttf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393100,846,176 - 100,877,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3100,846,176 - 100,876,979 (-)EnsemblGRCm39 Ensembl
GRCm383100,938,860 - 100,969,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3100,938,860 - 100,969,663 (-)EnsemblGRCm38mm10GRCm38
MGSCv373100,742,783 - 100,773,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363101,067,921 - 101,098,725 (-)NCBIMGSCv36mm8
Celera3103,146,966 - 103,178,082 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map343.86NCBI
TTF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,060,326 - 117,107,453 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,060,326 - 117,107,453 (+)EnsemblGRCh38hg38GRCh38
GRCh371117,602,948 - 117,650,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,404,472 - 117,447,015 (+)NCBINCBI36Build 36hg18NCBI36
Build 341117,314,990 - 117,357,531NCBI
Celera1115,831,559 - 115,874,100 (+)NCBICelera
Cytogenetic Map1p13.1NCBI
HuRef1115,461,465 - 115,503,489 (+)NCBIHuRef
CHM1_11117,717,868 - 117,760,384 (+)NCBICHM1_1
T2T-CHM13v2.01117,070,767 - 117,117,876 (+)NCBIT2T-CHM13v2.0
Ttf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82191,054,942 - 191,086,331 (-)NCBIGRCr8
mRatBN7.22188,366,321 - 188,397,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2188,366,331 - 188,397,689 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2196,003,905 - 196,035,231 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02193,856,180 - 193,887,513 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02188,682,813 - 188,714,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02203,317,673 - 203,350,752 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2203,318,855 - 203,350,736 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02222,765,601 - 222,799,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42196,016,515 - 196,018,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12195,951,009 - 195,981,606 (-)NCBI
Celera2180,809,095 - 180,840,952 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ttf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543520,168,842 - 20,207,999 (+)NCBIChiLan1.0ChiLan1.0
TTF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21109,714,355 - 109,758,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11109,313,839 - 109,355,195 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0185,417,804 - 85,459,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,413,049 - 120,454,630 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,413,049 - 120,454,630 (-)Ensemblpanpan1.1panPan2
TTF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11754,446,209 - 54,485,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1754,446,108 - 54,485,297 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,091,998 - 54,131,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01755,326,470 - 55,366,038 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1755,326,480 - 55,366,035 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11754,362,955 - 54,402,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01754,399,699 - 54,439,626 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01754,975,030 - 55,014,609 (+)NCBIUU_Cfam_GSD_1.0
Ttf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,272,302 - 12,311,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366272,177,871 - 2,213,901 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366272,177,814 - 2,216,536 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4103,632,381 - 103,695,036 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14103,632,377 - 103,676,478 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24113,596,173 - 113,640,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12016,624,797 - 16,667,813 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603819,295,123 - 19,341,520 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477212,754,198 - 12,798,041 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttf2
1093 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:643
Count of miRNA genes:432
Interacting mature miRNAs:512
Transcripts:ENSMUST00000076941, ENSMUST00000127357, ENSMUST00000145811, ENSMUST00000151697
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
8655600Cia5b_mcollagen induced arthritis QTL 5b (mouse)Not determined3100655184103744779Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse

Markers in Region
UniSTS:234780  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383100,938,950 - 100,939,182UniSTSGRCm38
MGSCv373100,742,873 - 100,743,105UniSTSGRCm37
Celera3103,147,056 - 103,147,288UniSTS
Cytogenetic Map3F2.2UniSTS
UniSTS:234781  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383100,940,091 - 100,940,195UniSTSGRCm38
MGSCv373100,744,014 - 100,744,118UniSTSGRCm37
Celera3103,148,199 - 103,148,303UniSTS
Cytogenetic Map3F2.2UniSTS
AV218430  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383100,938,950 - 100,939,092UniSTSGRCm38
MGSCv373100,742,873 - 100,743,015UniSTSGRCm37
Celera3103,147,056 - 103,147,198UniSTS
Cytogenetic Map3F2.2UniSTS
Whitehead/MRC_RH3950.02UniSTS
RH139677  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383100,938,901 - 100,939,092UniSTSGRCm38
MGSCv373100,742,824 - 100,743,015UniSTSGRCm37
Celera3103,147,007 - 103,147,198UniSTS
Cytogenetic Map3F2.2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_375588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000076941   ⟹   ENSMUSP00000076208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3100,846,176 - 100,876,979 (-)Ensembl
GRCm38.p6 Ensembl3100,938,860 - 100,969,663 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3100,853,666 - 100,876,979 (-)Ensembl
GRCm38.p6 Ensembl3100,946,350 - 100,969,663 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3100,849,171 - 100,853,673 (-)Ensembl
GRCm38.p6 Ensembl3100,941,855 - 100,946,357 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151697   ⟹   ENSMUSP00000119032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3100,854,779 - 100,859,922 (-)Ensembl
GRCm38.p6 Ensembl3100,947,463 - 100,952,606 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3100,866,076 - 100,867,311 (-)Ensembl
GRCm38.p6 Ensembl3100,958,760 - 100,959,995 (-)Ensembl
RefSeq Acc Id: NM_001013026   ⟹   NP_001013044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393100,846,176 - 100,876,979 (-)NCBI
GRCm383100,938,860 - 100,969,663 (-)NCBI
MGSCv373100,742,783 - 100,773,586 (-)RGD
Celera3103,146,966 - 103,178,082 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036163359   ⟹   XP_036019252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393100,846,176 - 100,877,016 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163360   ⟹   XP_036019253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393100,846,176 - 100,877,016 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163361   ⟹   XP_036019254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393100,847,895 - 100,877,016 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941407
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393100,846,176 - 100,877,016 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941408
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393100,847,894 - 100,877,016 (-)NCBI
Sequence:
RefSeq Acc Id: XR_375588
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393100,846,176 - 100,877,016 (-)NCBI
GRCm383100,948,145 - 100,969,700 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001013044   ⟸   NM_001013026
- UniProtKB: Q4V9Y7 (UniProtKB/Swiss-Prot),   Q5M924 (UniProtKB/Swiss-Prot),   Q5NC05 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000119032   ⟸   ENSMUST00000151697
RefSeq Acc Id: ENSMUSP00000076208   ⟸   ENSMUST00000076941
RefSeq Acc Id: XP_036019253   ⟸   XM_036163360
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019252   ⟸   XM_036163359
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036019254   ⟸   XM_036163361
- Peptide Label: isoform X3
Protein Domains
Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5NC05-F1-model_v2 AlphaFold Q5NC05 1-1138 view protein structure

Promoters
RGD ID:6834588
Promoter ID:MM_KWN:35532
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000037238,   ENSMUST00000106959,   OTTMUST00000016385,   OTTMUST00000016386
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363100,773,324 - 100,773,824 (-)MPROMDB
RGD ID:6881810
Promoter ID:EPDNEW_M4356
Type:multiple initiation site
Name:Ttf2_1
Description:Mus musculus transcription termination factor, RNA polymeraseII , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383100,969,663 - 100,969,723EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921294 AgrOrtholog
Ensembl Genes ENSMUSG00000033222 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076941 ENTREZGENE
  ENSMUST00000076941.12 UniProtKB/Swiss-Prot
  ENSMUST00000151697.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
InterPro DNA/RNA_helicase_DEAH_CS UniProtKB/Swiss-Prot
  Helicase_ATP-bd UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  SNF2-like_sf UniProtKB/Swiss-Prot
  SNF2/RAD54-like_C UniProtKB/Swiss-Prot
  SNF2_N UniProtKB/Swiss-Prot
  Znf_GRF UniProtKB/Swiss-Prot
KEGG Report mmu:74044 UniProtKB/Swiss-Prot
MGD MGI:1921294 ENTREZGENE
NCBI Gene 74044 ENTREZGENE
PANTHER TRANSCRIPTION TERMINATION FACTOR 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION TERMINATION FACTOR 2-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Helicase_C UniProtKB/Swiss-Prot
  SNF2_N UniProtKB/Swiss-Prot
  zf-GRF UniProtKB/Swiss-Prot
PhenoGen Ttf2 PhenoGen
PROSITE DEAH_ATP_HELICASE UniProtKB/Swiss-Prot
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot
  HELICASE_CTER UniProtKB/Swiss-Prot
  ZF_GRF UniProtKB/Swiss-Prot
SMART DEXDc UniProtKB/Swiss-Prot
  HELICc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt F6RQ10_MOUSE UniProtKB/TrEMBL
  Q4V9Y7 ENTREZGENE
  Q5M924 ENTREZGENE
  Q5NC05 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q4V9Y7 UniProtKB/Swiss-Prot
  Q5M924 UniProtKB/Swiss-Prot