Ttll1 (tubulin tyrosine ligase-like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ttll1 (tubulin tyrosine ligase-like 1) Mus musculus
Analyze
Symbol: Ttll1
Name: tubulin tyrosine ligase-like 1
RGD ID: 1319290
MGI Page MGI
Description: Enables tubulin-glutamic acid ligase activity. Acts upstream of or within several processes, including cerebellar Purkinje cell differentiation; mucociliary clearance; and regulation of blastocyst development. Located in ciliary basal body. Is expressed in 1-cell stage embryo; 8-cell stage embryo; blastocyst; and cortical plate. Used to study primary ciliary dyskinesia. Orthologous to human TTLL1 (TTL family tubulin polyglutamylase complex subunit L1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6330444E16Rik; AV014541; bM121M7.1 (novel protein (ortholog of human tubulin tyrosine ligase-like 1 (TTLL1)), isoform 1); p49; PGs3; polyglutamylase complex subunit TTLL1; probable tubulin polyglutamylase TTLL1; tubulin polyglutamylase complex subunit 3; tubulin polyglutamylase TTLL1; tubulin--tyrosine ligase-like protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18498  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391583,367,258 - 83,402,675 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1583,367,970 - 83,395,094 (-)EnsemblGRCm39 Ensembl
GRCm381583,483,057 - 83,518,474 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1583,483,769 - 83,510,893 (-)EnsemblGRCm38mm10GRCm38
MGSCv371583,314,199 - 83,341,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361583,311,538 - 83,338,643 (-)NCBIMGSCv36mm8
Celera1585,617,197 - 85,644,203 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1539.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:15890843   PMID:16141072   PMID:16141073   PMID:17360631  
PMID:17499049   PMID:20442420   PMID:20498047   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22170066   PMID:26581078   PMID:29440671   PMID:29474907   PMID:29593216   PMID:30420556  
PMID:34309047   PMID:34321999   PMID:35404950   PMID:36636822   PMID:37238654   PMID:37890489   PMID:38355793  


Genomics

Comparative Map Data
Ttll1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391583,367,258 - 83,402,675 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1583,367,970 - 83,395,094 (-)EnsemblGRCm39 Ensembl
GRCm381583,483,057 - 83,518,474 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1583,483,769 - 83,510,893 (-)EnsemblGRCm38mm10GRCm38
MGSCv371583,314,199 - 83,341,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361583,311,538 - 83,338,643 (-)NCBIMGSCv36mm8
Celera1585,617,197 - 85,644,203 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1539.4NCBI
TTLL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382243,039,516 - 43,089,391 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2243,039,516 - 43,089,419 (-)EnsemblGRCh38hg38GRCh38
GRCh372243,435,522 - 43,485,397 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,765,589 - 41,815,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 342241,760,142 - 41,809,927NCBI
Celera2227,346,102 - 27,395,837 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2226,394,153 - 26,443,736 (-)NCBIHuRef
CHM1_12243,395,326 - 43,445,000 (-)NCBICHM1_1
T2T-CHM13v2.02243,520,523 - 43,570,587 (-)NCBIT2T-CHM13v2.0
Ttll1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87116,499,536 - 116,528,833 (-)NCBIGRCr8
mRatBN7.27114,619,509 - 114,648,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7114,619,508 - 114,648,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7116,374,253 - 116,403,529 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07118,599,670 - 118,629,049 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07118,569,144 - 118,598,511 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07124,338,396 - 124,367,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7124,338,395 - 124,367,630 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07124,327,308 - 124,356,639 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47121,420,125 - 121,441,444 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7110,932,407 - 110,961,694 (-)NCBICelera
Cytogenetic Map7q34NCBI
Ttll1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541328,234,486 - 28,250,688 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541328,234,964 - 28,250,899 (-)NCBIChiLan1.0ChiLan1.0
TTLL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22352,864,209 - 52,912,749 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12255,556,957 - 55,605,725 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02223,924,628 - 23,973,282 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12242,128,224 - 42,174,850 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2242,128,224 - 42,174,850 (-)Ensemblpanpan1.1panPan2
TTLL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11022,456,150 - 22,492,375 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1022,456,146 - 22,488,505 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1022,392,648 - 22,439,139 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01023,200,588 - 23,247,276 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1023,200,588 - 23,247,305 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11022,919,827 - 22,966,313 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01023,239,254 - 23,285,573 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01023,413,992 - 23,460,493 (+)NCBIUU_Cfam_GSD_1.0
Ttll1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049456,091,553 - 6,110,264 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936718869,876 - 884,684 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936718869,901 - 884,708 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTLL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl55,793,780 - 5,827,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.155,793,760 - 5,827,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.253,216,125 - 3,250,371 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTLL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11925,576,525 - 25,616,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1925,576,379 - 25,616,328 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604599,827,235 - 99,869,254 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttll1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247525,883,042 - 5,903,687 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247525,883,039 - 5,901,333 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttll1
792 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1041
Count of miRNA genes:518
Interacting mature miRNAs:599
Transcripts:ENSMUST00000016897, ENSMUST00000109479, ENSMUST00000109480, ENSMUST00000131380, ENSMUST00000154401
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
11532732Pitm5_mprion incubation time 5 (mouse)158296406187054388Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse

Markers in Region
AV014541  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381583,484,115 - 83,484,199UniSTSGRCm38
MGSCv371583,314,545 - 83,314,629UniSTSGRCm37
Celera1585,617,543 - 85,617,627UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15730.29UniSTS
Ttll1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E1UniSTS
cM Map15 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK031917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL583889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY091756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000016897   ⟹   ENSMUSP00000016897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,367,970 - 83,395,094 (-)Ensembl
GRCm38.p6 Ensembl1583,483,769 - 83,510,893 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109479   ⟹   ENSMUSP00000105105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,376,075 - 83,395,075 (-)Ensembl
GRCm38.p6 Ensembl1583,491,874 - 83,510,874 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109480   ⟹   ENSMUSP00000105106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,368,029 - 83,395,082 (-)Ensembl
GRCm38.p6 Ensembl1583,483,828 - 83,510,881 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154401   ⟹   ENSMUSP00000117790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,386,337 - 83,394,994 (-)Ensembl
GRCm38.p6 Ensembl1583,502,136 - 83,510,793 (-)Ensembl
RefSeq Acc Id: NM_001357953   ⟹   NP_001344882
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,367,970 - 83,402,675 (-)NCBI
GRCm381583,483,769 - 83,518,474 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178869   ⟹   NP_849200
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,367,970 - 83,395,108 (-)NCBI
GRCm381583,483,769 - 83,510,907 (-)NCBI
MGSCv371583,314,199 - 83,341,337 (-)RGD
Celera1585,617,197 - 85,644,203 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006521078   ⟹   XP_006521141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,367,258 - 83,395,122 (-)NCBI
GRCm381583,483,057 - 83,510,921 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248606   ⟹   XP_030104466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,367,258 - 83,395,129 (-)NCBI
GRCm381583,483,057 - 83,510,930 (-)NCBI
Sequence:
RefSeq Acc Id: NP_849200   ⟸   NM_178869
- UniProtKB: Q8C0A2 (UniProtKB/Swiss-Prot),   Q543S4 (UniProtKB/Swiss-Prot),   Q3TGC8 (UniProtKB/Swiss-Prot),   Q91ZG1 (UniProtKB/Swiss-Prot),   Q91V51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006521141   ⟸   XM_006521078
- Peptide Label: isoform X1
- UniProtKB: Q8C0A2 (UniProtKB/Swiss-Prot),   Q543S4 (UniProtKB/Swiss-Prot),   Q3TGC8 (UniProtKB/Swiss-Prot),   Q91ZG1 (UniProtKB/Swiss-Prot),   Q91V51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030104466   ⟸   XM_030248606
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001344882   ⟸   NM_001357953
- UniProtKB: Q91V51 (UniProtKB/Swiss-Prot),   Q8C0A2 (UniProtKB/Swiss-Prot),   Q543S4 (UniProtKB/Swiss-Prot),   Q3TGC8 (UniProtKB/Swiss-Prot),   Q91ZG1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000117790   ⟸   ENSMUST00000154401
RefSeq Acc Id: ENSMUSP00000016897   ⟸   ENSMUST00000016897
RefSeq Acc Id: ENSMUSP00000105105   ⟸   ENSMUST00000109479
RefSeq Acc Id: ENSMUSP00000105106   ⟸   ENSMUST00000109480
Protein Domains
TTL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91V51-F1-model_v2 AlphaFold Q91V51 1-423 view protein structure

Promoters
RGD ID:6826583
Promoter ID:MM_KWN:19254
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000109479,   ENSMUST00000109480,   ENSMUST00000109481,   NM_178869,   OTTMUST00000057016,   OTTMUST00000057017
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361583,341,011 - 83,341,511 (-)MPROMDB
RGD ID:8684568
Promoter ID:EPDNEW_M20315
Type:initiation region
Name:Ttll1_1
Description:Mus musculus tubulin tyrosine ligase-like 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381583,510,877 - 83,510,937EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443047 AgrOrtholog
Ensembl Genes ENSMUSG00000022442 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000016897 ENTREZGENE
  ENSMUST00000016897.12 UniProtKB/Swiss-Prot
  ENSMUST00000109479.8 UniProtKB/TrEMBL
  ENSMUST00000109480.8 UniProtKB/Swiss-Prot
  ENSMUST00000154401.8 UniProtKB/TrEMBL
Gene3D-CATH ATP-grasp fold, B domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TTL/TTLL_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319953 UniProtKB/Swiss-Prot
MGD MGI:2443047 ENTREZGENE
NCBI Gene 319953 ENTREZGENE
PANTHER PTHR12241:SF31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUBULIN POLYGLUTAMYLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TTL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ttll1 PhenoGen
PROSITE TTL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6PW19_MOUSE UniProtKB/TrEMBL
  Q3TGC8 ENTREZGENE
  Q543S4 ENTREZGENE
  Q8BJG7_MOUSE UniProtKB/TrEMBL
  Q8C0A2 ENTREZGENE
  Q91V51 ENTREZGENE
  Q91ZG1 ENTREZGENE
  TTLL1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TGC8 UniProtKB/Swiss-Prot
  Q543S4 UniProtKB/Swiss-Prot
  Q8C0A2 UniProtKB/Swiss-Prot
  Q91ZG1 UniProtKB/Swiss-Prot