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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | pyridoxine-dependent epilepsy | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | pyridoxine-dependent epilepsy | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | GOAs Human GO annotations | GOA_HUMAN data from the GO Consortium |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10496079 | PMID:11230166 | PMID:11256614 | PMID:12477932 | PMID:14702039 | PMID:15489334 | PMID:16344560 | PMID:21664474 | PMID:21873635 | PMID:22202459 | PMID:22863883 |
PMID:23376485 | PMID:24144296 | PMID:24981860 | PMID:25963833 | PMID:26186194 | PMID:26344197 | PMID:26496610 | PMID:27499296 | PMID:27912044 | PMID:28391250 | PMID:28514442 | PMID:28515276 |
PMID:28914444 | PMID:30948266 | PMID:31048545 | PMID:31091453 | PMID:31980649 | PMID:32203420 | PMID:33961781 | PMID:34728620 |
PLPBP (Homo sapiens - human) |
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Plpbp (Mus musculus - house mouse) |
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Plpbp (Rattus norvegicus - Norway rat) |
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Plpbp (Chinchilla lanigera - long-tailed chinchilla) |
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PLPBP (Pan paniscus - bonobo/pygmy chimpanzee) |
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PLPBP (Canis lupus familiaris - dog) |
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Plpbp (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PLPBP (Sus scrofa - pig) |
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PLPBP (Chlorocebus sabaeus - green monkey) |
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Plpbp (Heterocephalus glaber - naked mole-rat) |
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RH76760 |
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SHGC-147554 |
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RH44321 |
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WI-15099 |
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RH68230 |
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The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | pharyngeal arch | |
High | ||||||||||||||||||
Medium | 2435 | 2604 | 1697 | 606 | 1688 | 447 | 4321 | 2071 | 3540 | 410 | 1426 | 1610 | 175 | 1 | 1203 | 2774 | 3 | 2 |
Low | 4 | 387 | 29 | 18 | 263 | 18 | 36 | 126 | 194 | 9 | 34 | 3 | 1 | 14 | 3 | |||
Below cutoff |
RefSeq Transcripts | NG_053030 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001349346 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001349347 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001349348 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001349349 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_007198 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AA463397 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AB018566 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC138356 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AI355650 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK021923 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK291135 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL136616 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AW028116 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC012334 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BM984988 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471080 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CP068270 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CR533532 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DA086552 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENST00000328195 ⟹ ENSP00000333551 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000518036 ⟹ ENSP00000428005 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000520073 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000521631 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000522808 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000523187 ⟹ ENSP00000427886 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000523358 ⟹ ENSP00000427778 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000523521 ⟹ ENSP00000429425 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000523994 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001349346 ⟹ NP_001336275 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001349347 ⟹ NP_001336276 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001349348 ⟹ NP_001336277 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001349349 ⟹ NP_001336278 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_007198 ⟹ NP_009129 | ||||||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001336275 | (Get FASTA) | NCBI Sequence Viewer |
NP_001336276 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001336277 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001336278 | (Get FASTA) | NCBI Sequence Viewer | |
NP_009129 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH12334 | (Get FASTA) | NCBI Sequence Viewer |
BAA36842 | (Get FASTA) | NCBI Sequence Viewer | |
BAF83824 | (Get FASTA) | NCBI Sequence Viewer | |
BAG51058 | (Get FASTA) | NCBI Sequence Viewer | |
CAB66551 | (Get FASTA) | NCBI Sequence Viewer | |
CAG38563 | (Get FASTA) | NCBI Sequence Viewer | |
EAW63360 | (Get FASTA) | NCBI Sequence Viewer | |
EAW63361 | (Get FASTA) | NCBI Sequence Viewer | |
EAW63362 | (Get FASTA) | NCBI Sequence Viewer | |
EAW63363 | (Get FASTA) | NCBI Sequence Viewer | |
EAW63364 | (Get FASTA) | NCBI Sequence Viewer | |
O94903 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_009129 ⟸ NM_007198 |
- Peptide Label: | isoform 2 |
- UniProtKB: | O94903 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001336278 ⟸ NM_001349349 |
- Peptide Label: | isoform 5 |
- Sequence: |
RefSeq Acc Id: | NP_001336275 ⟸ NM_001349346 |
- Peptide Label: | isoform 1 |
- Sequence: |
RefSeq Acc Id: | NP_001336276 ⟸ NM_001349347 |
- Peptide Label: | isoform 3 |
- Sequence: |
RefSeq Acc Id: | NP_001336277 ⟸ NM_001349348 |
- Peptide Label: | isoform 4 |
- Sequence: |
RefSeq Acc Id: | ENSP00000428005 ⟸ ENST00000518036 |
RefSeq Acc Id: | ENSP00000429425 ⟸ ENST00000523521 |
RefSeq Acc Id: | ENSP00000427778 ⟸ ENST00000523358 |
RefSeq Acc Id: | ENSP00000427886 ⟸ ENST00000523187 |
RefSeq Acc Id: | ENSP00000333551 ⟸ ENST00000328195 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-O94903-F1-model_v2 | AlphaFold | O94903 | 1-275 | view protein structure |
RGD ID: | 6806959 | ||||||||
Promoter ID: | HG_KWN:61118 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4 | ||||||||
Transcripts: | UC003XKH.1 | ||||||||
Position: |
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RGD ID: | 7213095 | ||||||||
Promoter ID: | EPDNEW_H12292 | ||||||||
Type: | initiation region | ||||||||
Name: | PROSC_1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 8p23.1-11.21(chr8:12609975-42085703)x3 | copy number gain | See cases [RCV000050294] | Chr8:12609975..42085703 [GRCh38] Chr8:12467484..41943221 [GRCh37] Chr8:12511855..42062378 [NCBI36] Chr8:8p23.1-11.21 |
pathogenic |
GRCh38/hg38 8p21.2-q11.21(chr8:25832130-48521849)x3 | copy number gain | See cases [RCV000050904] | Chr8:25832130..48521849 [GRCh38] Chr8:25689646..49434409 [GRCh37] Chr8:25745563..49596962 [NCBI36] Chr8:8p21.2-q11.21 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12728904-43673207)x3 | copy number gain | See cases [RCV000050912] | Chr8:12728904..43673207 [GRCh38] Chr8:12586413..43528350 [GRCh37] Chr8:12630784..43647507 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p12-11.21(chr8:34312250-43158901)x1 | copy number loss | See cases [RCV000050745] | Chr8:34312250..43158901 [GRCh38] Chr8:34169768..43014044 [GRCh37] Chr8:34289310..43133201 [NCBI36] Chr8:8p12-11.21 |
pathogenic |
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 | copy number gain | See cases [RCV000051206] | Chr8:241530..145049449 [GRCh38] Chr8:191530..146274835 [GRCh37] Chr8:181530..146245639 [NCBI36] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh38/hg38 8p23.1-11.21(chr8:12728904-41928741)x3 | copy number gain | See cases [RCV000051110] | Chr8:12728904..41928741 [GRCh38] Chr8:12586413..41786259 [GRCh37] Chr8:12630784..41905416 [NCBI36] Chr8:8p23.1-11.21 |
pathogenic |
GRCh38/hg38 8p12-q11.21(chr8:29719897-48521849)x3 | copy number gain | See cases [RCV000050995] | Chr8:29719897..48521849 [GRCh38] Chr8:29577413..49434409 [GRCh37] Chr8:29633332..49596962 [NCBI36] Chr8:8p12-q11.21 |
pathogenic |
GRCh38/hg38 8p23.1-11.23(chr8:12609975-37892000)x3 | copy number gain | See cases [RCV000053629] | Chr8:12609975..37892000 [GRCh38] Chr8:12467484..37749518 [GRCh37] Chr8:12511855..37868676 [NCBI36] Chr8:8p23.1-11.23 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43336172)x3 | copy number gain | See cases [RCV000053630] | Chr8:12609975..43336172 [GRCh38] Chr8:12467484..43191315 [GRCh37] Chr8:12511855..43310472 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43255410)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053631]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053631]|See cases [RCV000053631] | Chr8:12609975..43255410 [GRCh38] Chr8:12467484..43110553 [GRCh37] Chr8:12511855..43229710 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12750796-43532444)x3 | copy number gain | See cases [RCV000053632] | Chr8:12750796..43532444 [GRCh38] Chr8:12608305..43387587 [GRCh37] Chr8:12652676..43506744 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p22-q11.21(chr8:14940110-47929925)x3 | copy number gain | See cases [RCV000053635] | Chr8:14940110..47929925 [GRCh38] Chr8:14797619..48842485 [GRCh37] Chr8:14841990..49005038 [NCBI36] Chr8:8p22-q11.21 |
pathogenic |
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] | Chr8:244417..145054775 [GRCh38] Chr8:194417..146280161 [GRCh37] Chr8:184417..146250965 [NCBI36] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 | copy number gain | See cases [RCV000053602] | Chr8:241530..145054634 [GRCh38] Chr8:191530..146280020 [GRCh37] Chr8:181530..146250824 [NCBI36] Chr8:8p23.3-q24.3 |
pathogenic |
NM_007198.3(PROSC):c.772C>T (p.Pro258Ser) | single nucleotide variant | Malignant melanoma [RCV000068299] | Chr8:37778048 [GRCh38] Chr8:37635566 [GRCh37] Chr8:37754724 [NCBI36] Chr8:8p11.23 |
not provided |
NM_007198.3(PROSC):c.773C>T (p.Pro258Leu) | single nucleotide variant | Malignant melanoma [RCV000068300] | Chr8:37778049 [GRCh38] Chr8:37635567 [GRCh37] Chr8:37754725 [NCBI36] Chr8:8p11.23 |
not provided |
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 | copy number gain | not provided [RCV000848192] | Chr8:31936551..146295771 [GRCh37] Chr8:8p12-q24.3 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43673207)x3 | copy number gain | See cases [RCV000135786] | Chr8:12609975..43673207 [GRCh38] Chr8:12467484..43528350 [GRCh37] Chr8:12511855..43647507 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12383584-43673207)x3 | copy number gain | See cases [RCV000135566] | Chr8:12383584..43673207 [GRCh38] Chr8:12241093..43528350 [GRCh37] Chr8:12285464..43647507 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p23.1-11.21(chr8:12728904-40169194)x3 | copy number gain | See cases [RCV000136516] | Chr8:12728904..40169194 [GRCh38] Chr8:12586413..40026713 [GRCh37] Chr8:12630784..40145870 [NCBI36] Chr8:8p23.1-11.21 |
pathogenic |
GRCh38/hg38 8p12-11.21(chr8:29362097-40231708)x1 | copy number loss | See cases [RCV000136878] | Chr8:29362097..40231708 [GRCh38] Chr8:29219614..40089227 [GRCh37] Chr8:29275533..40208384 [NCBI36] Chr8:8p12-11.21 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12182421-43673207)x3 | copy number gain | See cases [RCV000137249] | Chr8:12182421..43673207 [GRCh38] Chr8:12039930..43528350 [GRCh37] Chr8:12077339..43647507 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p23.3-11.23(chr8:226452-38021728)x3 | copy number gain | See cases [RCV000137807] | Chr8:226452..38021728 [GRCh38] Chr8:176452..37879246 [GRCh37] Chr8:166452..37998403 [NCBI36] Chr8:8p23.3-11.23 |
pathogenic|likely pathogenic |
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 | copy number gain | See cases [RCV000138643] | Chr8:241605..145054781 [GRCh38] Chr8:191605..146280167 [GRCh37] Chr8:181605..146250971 [NCBI36] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh38/hg38 8p23.1-11.22(chr8:7141697-38695546)x3 | copy number gain | See cases [RCV000139891] | Chr8:7141697..38695546 [GRCh38] Chr8:6999219..38553064 [GRCh37] Chr8:6986629..38672221 [NCBI36] Chr8:8p23.1-11.22 |
pathogenic |
GRCh38/hg38 8p23.1-11.22(chr8:12729023-39235934)x3 | copy number gain | See cases [RCV000139770] | Chr8:12729023..39235934 [GRCh38] Chr8:12586532..39093453 [GRCh37] Chr8:12630903..39212610 [NCBI36] Chr8:8p23.1-11.22 |
pathogenic |
GRCh38/hg38 8p12-q12.1(chr8:36580103-59618998)x3 | copy number gain | See cases [RCV000139582] | Chr8:36580103..59618998 [GRCh38] Chr8:36437621..60531557 [GRCh37] Chr8:36556779..60694111 [NCBI36] Chr8:8p12-q12.1 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12646123-43686843)x3 | copy number gain | See cases [RCV000139796] | Chr8:12646123..43686843 [GRCh38] Chr8:12503632..43541986 [GRCh37] Chr8:12548003..43661143 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 | copy number gain | See cases [RCV000141808] | Chr8:208048..145070385 [GRCh38] Chr8:158048..146295771 [GRCh37] Chr8:148048..146266575 [NCBI36] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 | copy number gain | See cases [RCV000142021] | Chr8:21291522..145070385 [GRCh38] Chr8:21149033..146295771 [GRCh37] Chr8:21193313..146266575 [NCBI36] Chr8:8p21.3-q24.3 |
pathogenic |
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 | copy number gain | See cases [RCV000142858] | Chr8:226452..145068712 [GRCh38] Chr8:176452..146294098 [GRCh37] Chr8:166452..146264902 [NCBI36] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 | copy number gain | See cases [RCV000148092] | Chr8:241530..145054634 [GRCh38] Chr8:191530..146280020 [GRCh37] Chr8:181530..146250824 [NCBI36] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh38/hg38 8p23.1-11.21(chr8:12633490-40685533)x3 | copy number gain | See cases [RCV000143508] | Chr8:12633490..40685533 [GRCh38] Chr8:12490999..40543052 [GRCh37] Chr8:12535370..40662209 [NCBI36] Chr8:8p23.1-11.21 |
pathogenic |
GRCh38/hg38 8p23.1-11.21(chr8:12609975-42085703)x3 | copy number gain | See cases [RCV000148249] | Chr8:12609975..42085703 [GRCh38] Chr8:12467484..41943221 [GRCh37] Chr8:12511855..42062378 [NCBI36] Chr8:8p23.1-11.21 |
pathogenic |
GRCh38/hg38 8p23.1-11.1(chr8:12728904-43673207)x3 | copy number gain | See cases [RCV000148237] | Chr8:12728904..43673207 [GRCh38] Chr8:12586413..43528350 [GRCh37] Chr8:12630784..43647507 [NCBI36] Chr8:8p23.1-11.1 |
pathogenic |
NM_007198.4(PLPBP):c.70G>A (p.Val24Met) | single nucleotide variant | not provided [RCV000513843] | Chr8:37762729 [GRCh38] Chr8:37620247 [GRCh37] Chr8:8p11.23 |
benign|likely benign |
GRCh37/hg19 8p23.1-11.22(chr8:12528482-39593802)x3 | copy number gain | See cases [RCV000511325] | Chr8:12528482..39593802 [GRCh37] Chr8:8p23.1-11.22 |
pathogenic |
GRCh37/hg19 8p11.23-11.22(chr8:37555526-38600788)x3 | copy number gain | See cases [RCV000240444] | Chr8:37555526..38600788 [GRCh37] Chr8:8p11.23-11.22 |
uncertain significance |
NM_007198.4(PLPBP):c.370_373del (p.Asp124fs) | deletion | not provided [RCV000599011] | Chr8:37772803..37772806 [GRCh38] Chr8:37630321..37630324 [GRCh37] Chr8:8p11.23 |
pathogenic |
NM_007198.4(PLPBP):c.207+1G>A | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000415527] | Chr8:37765634 [GRCh38] Chr8:37623152 [GRCh37] Chr8:8p11.23 |
pathogenic |
NM_007198.4(PLPBP):c.233C>G (p.Ser78Ter) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000415554]|not provided [RCV000627267] | Chr8:37765736 [GRCh38] Chr8:37623254 [GRCh37] Chr8:8p11.23 |
pathogenic |
NM_007198.4(PLPBP):c.320-2A>G | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000415559] | Chr8:37772753 [GRCh38] Chr8:37630271 [GRCh37] Chr8:8p11.23 |
pathogenic |
NM_007198.4(PLPBP):c.722G>A (p.Arg241Gln) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000415533] | Chr8:37777998 [GRCh38] Chr8:37635516 [GRCh37] Chr8:8p11.23 |
pathogenic |
NM_007198.4(PLPBP):c.260C>T (p.Pro87Leu) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000415592] | Chr8:37766296 [GRCh38] Chr8:37623814 [GRCh37] Chr8:8p11.23 |
pathogenic|likely pathogenic |
NM_007198.4(PLPBP):c.524T>C (p.Leu175Pro) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000415599] | Chr8:37775408 [GRCh38] Chr8:37632926 [GRCh37] Chr8:8p11.23 |
pathogenic |
GRCh37/hg19 8p21.2-q12.1(chr8:24772064-24813176)x3 | copy number gain | See cases [RCV000446588] | Chr8:24772064..24813176 [GRCh37] Chr8:8p21.2-q12.1 |
uncertain significance |
GRCh37/hg19 8p11.23-11.22(chr8:37566388-38802788)x1 | copy number loss | See cases [RCV000447568] | Chr8:37566388..38802788 [GRCh37] Chr8:8p11.23-11.22 |
likely pathogenic |
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 | copy number gain | See cases [RCV000447507] | Chr8:158991..146280828 [GRCh37] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh37/hg19 8p23.3-11.1(chr8:158048-43786723)x3 | copy number gain | See cases [RCV000447909] | Chr8:158048..43786723 [GRCh37] Chr8:8p23.3-11.1 |
pathogenic |
GRCh37/hg19 8p23.1-11.1(chr8:12580132-43388233)x3 | copy number gain | See cases [RCV000447913] | Chr8:12580132..43388233 [GRCh37] Chr8:8p23.1-11.1 |
pathogenic |
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) | copy number gain | See cases [RCV000510234] | Chr8:158049..146295771 [GRCh37] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh37/hg19 8p23.1-11.1(chr8:11935023-43824035)x3 | copy number gain | See cases [RCV000511028] | Chr8:11935023..43824035 [GRCh37] Chr8:8p23.1-11.1 |
pathogenic |
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 | copy number gain | See cases [RCV000511095] | Chr8:158049..146295771 [GRCh37] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 | copy number gain | See cases [RCV000512169] | Chr8:12490999..146295771 [GRCh37] Chr8:8p23.1-q24.3 |
pathogenic |
GRCh37/hg19 8p11.23(chr8:37618754-38194831)x3 | copy number gain | not provided [RCV000658484] | Chr8:37618754..38194831 [GRCh37] Chr8:8p11.23 |
uncertain significance |
GRCh37/hg19 8p12-11.21(chr8:31352498-41481295)x3 | copy number gain | not provided [RCV000683035] | Chr8:31352498..41481295 [GRCh37] Chr8:8p12-11.21 |
pathogenic |
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 | copy number gain | not provided [RCV000747254] | Chr8:164984..146293414 [GRCh37] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 | copy number gain | not provided [RCV000747248] | Chr8:10213..146293414 [GRCh37] Chr8:8p23.3-q24.3 |
pathogenic |
GRCh37/hg19 8p12-11.23(chr8:36486830-37992515)x1 | copy number loss | See cases [RCV000790586] | Chr8:36486830..37992515 [GRCh37] Chr8:8p12-11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.46G>T (p.Ala16Ser) | single nucleotide variant | not provided [RCV000904311] | Chr8:37762705 [GRCh38] Chr8:37620223 [GRCh37] Chr8:8p11.23 |
likely benign |
NM_007198.4(PLPBP):c.773del (p.Pro258fs) | deletion | Epilepsy, early-onset, vitamin B6-dependent [RCV001007890] | Chr8:37778046 [GRCh38] Chr8:37635564 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.49T>C (p.Leu17=) | single nucleotide variant | not provided [RCV000920422] | Chr8:37762708 [GRCh38] Chr8:37620226 [GRCh37] Chr8:8p11.23 |
likely benign |
NM_007198.4(PLPBP):c.624G>A (p.Leu208=) | single nucleotide variant | not provided [RCV000983140] | Chr8:37775944 [GRCh38] Chr8:37633462 [GRCh37] Chr8:8p11.23 |
likely benign |
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 | copy number gain | not provided [RCV000848478] | Chr8:158048..146295771 [GRCh37] Chr8:8p23.3-q24.3 |
pathogenic |
NM_007198.4(PLPBP):c.613C>T (p.Arg205Trp) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000988047] | Chr8:37775933 [GRCh38] Chr8:37633451 [GRCh37] Chr8:8p11.23 |
uncertain significance |
GRCh37/hg19 8p12-11.1(chr8:36094421-43822214)x3 | copy number gain | not provided [RCV000848822] | Chr8:36094421..43822214 [GRCh37] Chr8:8p12-11.1 |
uncertain significance |
NM_007198.4(PLPBP):c.704T>G (p.Val235Gly) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV000988048] | Chr8:37777980 [GRCh38] Chr8:37635498 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_001349349.1(PLPBP):c.4A>G (p.Met2Val) | single nucleotide variant | not provided [RCV001684775] | Chr8:37762558 [GRCh38] Chr8:37620076 [GRCh37] Chr8:8p11.23 |
benign |
NM_007198.4(PLPBP):c.*27A>G | single nucleotide variant | not provided [RCV001696424] | Chr8:37778131 [GRCh38] Chr8:37635649 [GRCh37] Chr8:8p11.23 |
benign |
NM_007198.4(PLPBP):c.598-64T>A | single nucleotide variant | not provided [RCV001639963] | Chr8:37775854 [GRCh38] Chr8:37633372 [GRCh37] Chr8:8p11.23 |
benign |
NM_007198.4(PLPBP):c.132G>A (p.Ala44=) | single nucleotide variant | not provided [RCV000886710] | Chr8:37765558 [GRCh38] Chr8:37623076 [GRCh37] Chr8:8p11.23 |
likely benign |
NM_007198.4(PLPBP):c.288C>T (p.His96=) | single nucleotide variant | not provided [RCV000897095] | Chr8:37766324 [GRCh38] Chr8:37623842 [GRCh37] Chr8:8p11.23 |
benign |
NM_007198.4(PLPBP):c.157A>G (p.Met53Val) | single nucleotide variant | not provided [RCV000955390] | Chr8:37765583 [GRCh38] Chr8:37623101 [GRCh37] Chr8:8p11.23 |
benign |
NM_007198.4(PLPBP):c.86C>T (p.Ala29Val) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV001591710] | Chr8:37762745 [GRCh38] Chr8:37620263 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.696G>A (p.Ala232=) | single nucleotide variant | not provided [RCV001091596] | Chr8:37776016 [GRCh38] Chr8:37633534 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.40G>C (p.Gly14Arg) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV001334650] | Chr8:37762699 [GRCh38] Chr8:37620217 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.137G>A (p.Ser46Asn) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV001328599] | Chr8:37765563 [GRCh38] Chr8:37623081 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.347C>T (p.Thr116Ile) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV001328600] | Chr8:37772782 [GRCh38] Chr8:37630300 [GRCh37] Chr8:8p11.23 |
uncertain significance |
GRCh37/hg19 8p23.3-11.1(chr8:176814-43396776) | copy number gain | Abnormal fetal cardiovascular morphology [RCV001291977] | Chr8:176814..43396776 [GRCh37] Chr8:8p23.3-11.1 |
pathogenic |
NM_007198.4(PLPBP):c.823C>G (p.His275Asp) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV001328601] | Chr8:37778099 [GRCh38] Chr8:37635617 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.52C>T (p.Arg18Trp) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV001334651] | Chr8:37762711 [GRCh38] Chr8:37620229 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.597+111T>C | single nucleotide variant | not provided [RCV001652404] | Chr8:37775592 [GRCh38] Chr8:37633110 [GRCh37] Chr8:8p11.23 |
benign |
NC_000008.10:g.(?_37595441)_(38314964_?)dup | duplication | not provided [RCV002238517] | Chr8:37595441..38314964 [GRCh37] Chr8:8p11.23-11.22 |
uncertain significance |
NM_007198.4(PLPBP):c.211C>T (p.Gln71Ter) | single nucleotide variant | Epilepsy, early-onset, vitamin B6-dependent [RCV001784882] | Chr8:37765714 [GRCh38] Chr8:37623232 [GRCh37] Chr8:8p11.23 |
pathogenic |
NM_007198.4(PLPBP):c.187C>T (p.Arg63Cys) | single nucleotide variant | not provided [RCV001769192] | Chr8:37765613 [GRCh38] Chr8:37623131 [GRCh37] Chr8:8p11.23 |
uncertain significance |
NM_007198.4(PLPBP):c.530T>C (p.Phe177Ser) | single nucleotide variant | not provided [RCV001758070] | Chr8:37775414 [GRCh38] Chr8:37632932 [GRCh37] Chr8:8p11.23 |
uncertain significance |
GRCh37/hg19 8p11.23(chr8:37544476-37818465)x3 | copy number gain | not provided [RCV001829089] | Chr8:37544476..37818465 [GRCh37] Chr8:8p11.23 |
uncertain significance |
GRCh37/hg19 8p11.23-11.22(chr8:37566388-38802788) | copy number loss | not specified [RCV002053757] | Chr8:37566388..38802788 [GRCh37] Chr8:8p11.23-11.22 |
likely pathogenic |
NC_000008.10:g.(?_37595441)_(38961219_?)del | deletion | Hypogonadotropic hypogonadism 2 with or without anosmia [RCV001970153]|not provided [RCV001950890] | Chr8:37595441..38961219 [GRCh37] Chr8:8p11.23-11.22 |
pathogenic |
Database | Acc Id | Source(s) |
AGR Gene | HGNC:9457 | AgrOrtholog |
COSMIC | PLPBP | COSMIC |
Ensembl Genes | ENSG00000147471 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSP00000333551 | ENTREZGENE |
ENSP00000333551.3 | UniProtKB/Swiss-Prot | |
ENSP00000427778.1 | UniProtKB/TrEMBL | |
ENSP00000427886.1 | UniProtKB/TrEMBL | |
ENSP00000428005.1 | UniProtKB/TrEMBL | |
ENSP00000429425.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENST00000328195 | ENTREZGENE |
ENST00000328195.8 | UniProtKB/Swiss-Prot | |
ENST00000518036.5 | UniProtKB/TrEMBL | |
ENST00000523187.5 | UniProtKB/TrEMBL | |
ENST00000523358.5 | UniProtKB/TrEMBL | |
ENST00000523521.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.20.20.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GTEx | ENSG00000147471 | GTEx |
HGNC ID | HGNC:9457 | ENTREZGENE |
Human Proteome Map | PLPBP | Human Proteome Map |
InterPro | Ala_racemase_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PLP-binding_barrel | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PyrdxlP_homeostasis | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | hsa:11212 | UniProtKB/Swiss-Prot |
NCBI Gene | 11212 | ENTREZGENE |
OMIM | 604436 | OMIM |
617290 | OMIM | |
PANTHER | PTHR10146 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Pfam | Ala_racemase_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PharmGKB | PA33810 | PharmGKB |
PIRSF | YBL036c_PLPDEIII | UniProtKB/Swiss-Prot |
PROSITE | UPF0001 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF51419 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TIGRFAMs | TIGR00044 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | E5RFX7_HUMAN | UniProtKB/TrEMBL |
E5RFZ4_HUMAN | UniProtKB/TrEMBL | |
E5RG77_HUMAN | UniProtKB/TrEMBL | |
H0YBG2_HUMAN | UniProtKB/TrEMBL | |
O94903 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q6FI94 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2017-03-07 | PLPBP | pyridoxal phosphate binding protein | PROSC | proline synthetase cotranscribed homolog (bacterial) | Symbol and/or name change | 5135510 | APPROVED |
2016-05-31 | PROSC | proline synthetase cotranscribed homolog (bacterial) | proline synthetase co-transcribed homolog (bacterial) | Symbol and/or name change | 5135510 | APPROVED |