RRH (retinal pigment epithelium-derived rhodopsin homolog) - Rat Genome Database

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Gene: RRH (retinal pigment epithelium-derived rhodopsin homolog) Homo sapiens
Analyze
Symbol: RRH
Name: retinal pigment epithelium-derived rhodopsin homolog
RGD ID: 1319017
HGNC Page HGNC:10450
Description: Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to be located in membrane. Predicted to be active in photoreceptor outer segment and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: peropsin; visual pigment-like receptor peropsin
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384109,827,972 - 109,844,942 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4109,827,972 - 109,849,123 (+)EnsemblGRCh38hg38GRCh38
GRCh374110,749,128 - 110,766,098 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364110,968,599 - 110,985,312 (+)NCBINCBI36Build 36hg18NCBI36
Build 344111,106,749 - 111,123,267NCBI
Celera4108,042,720 - 108,059,581 (+)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4106,481,266 - 106,497,986 (+)NCBIHuRef
CHM1_14110,725,638 - 110,742,332 (+)NCBICHM1_1
T2T-CHM13v2.04113,130,031 - 113,147,001 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,TAS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9275222   PMID:11329013   PMID:12477932   PMID:12542842   PMID:15761153   PMID:17167409   PMID:18240029   PMID:20332099   PMID:21873635   PMID:29476064   PMID:32296183  


Genomics

Comparative Map Data
RRH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384109,827,972 - 109,844,942 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4109,827,972 - 109,849,123 (+)EnsemblGRCh38hg38GRCh38
GRCh374110,749,128 - 110,766,098 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364110,968,599 - 110,985,312 (+)NCBINCBI36Build 36hg18NCBI36
Build 344111,106,749 - 111,123,267NCBI
Celera4108,042,720 - 108,059,581 (+)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4106,481,266 - 106,497,986 (+)NCBIHuRef
CHM1_14110,725,638 - 110,742,332 (+)NCBICHM1_1
T2T-CHM13v2.04113,130,031 - 113,147,001 (+)NCBIT2T-CHM13v2.0
Rrh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393129,596,837 - 129,618,140 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3129,598,057 - 129,616,236 (-)EnsemblGRCm39 Ensembl
GRCm383129,808,575 - 129,822,505 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3129,804,408 - 129,822,587 (-)EnsemblGRCm38mm10GRCm38
MGSCv373129,511,493 - 129,525,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363129,796,430 - 129,814,515 (-)NCBIMGSCv36mm8
Celera3136,321,461 - 136,335,255 (-)NCBICelera
Cytogenetic Map3G3NCBI
cM Map359.09NCBI
Rrh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82221,036,436 - 221,048,627 (-)NCBIGRCr8
mRatBN7.22218,362,195 - 218,374,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2218,362,200 - 218,374,599 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2226,047,228 - 226,059,410 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02223,946,915 - 223,959,097 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02218,804,568 - 218,816,750 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02235,237,422 - 235,250,474 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2235,237,414 - 235,249,575 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0274,673,233 - 74,686,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42227,256,627 - 227,266,897 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12227,243,323 - 227,253,557 (-)NCBI
Celera2210,647,417 - 210,659,569 (-)NCBICelera
Cytogenetic Map2q43NCBI
Rrh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955496460,094 - 473,007 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955496460,094 - 473,007 (-)NCBIChiLan1.0ChiLan1.0
RRH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23107,918,799 - 107,937,107 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14108,209,185 - 108,230,780 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04102,322,028 - 102,341,974 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14112,891,370 - 112,909,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4112,891,370 - 112,909,398 (+)Ensemblpanpan1.1panPan2
RRH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13230,005,920 - 30,027,012 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3230,008,312 - 30,024,851 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3212,002,978 - 12,024,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03230,226,694 - 30,247,825 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3230,216,948 - 30,245,664 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13230,220,961 - 30,242,081 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03229,964,046 - 29,985,096 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,864,018 - 9,885,055 (-)NCBIUU_Cfam_GSD_1.0
Rrh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530110,918,509 - 10,934,686 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365631,017,401 - 1,035,520 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365631,017,272 - 1,032,486 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RRH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8112,382,189 - 112,399,176 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18112,382,208 - 112,399,622 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28120,465,521 - 120,481,832 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RRH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1757,724,231 - 57,743,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl757,726,055 - 57,742,494 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603736,376,920 - 36,395,581 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rrh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462483077,598 - 90,507 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462483077,889 - 90,507 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RRH
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q25(chr4:109800241-109990141)x3 copy number gain See cases [RCV000051633] Chr4:109800241..109990141 [GRCh38]
Chr4:110721397..110911297 [GRCh37]
Chr4:110940846..111130746 [NCBI36]
Chr4:4q25
uncertain significance
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3
pathogenic
GRCh38/hg38 4q24-25(chr4:105778347-110206873)x3 copy number gain See cases [RCV000051777] Chr4:105778347..110206873 [GRCh38]
Chr4:106699504..111128029 [GRCh37]
Chr4:106918953..111347478 [NCBI36]
Chr4:4q24-25
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q25-35.2(chr4:109199664-189752726)x3 copy number gain See cases [RCV000511945] Chr4:109199664..189752726 [GRCh37]
Chr4:4q25-35.2
pathogenic
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3 copy number gain See cases [RCV000510970] Chr4:93071152..190957473 [GRCh37]
Chr4:4q22.1-35.2
pathogenic
NM_006583.5(RRH):c.584C>T (p.Ala195Val) single nucleotide variant not specified [RCV004286606] Chr4:109837469 [GRCh38]
Chr4:110758625 [GRCh37]
Chr4:4q25
likely benign
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
NM_006583.5(RRH):c.423C>A (p.Tyr141Ter) single nucleotide variant not provided [RCV000914095] Chr4:109836032 [GRCh38]
Chr4:110757188 [GRCh37]
Chr4:4q25
likely benign
GRCh37/hg19 4q24-31.21(chr4:104715235-145252595) copy number gain not specified [RCV002053446] Chr4:104715235..145252595 [GRCh37]
Chr4:4q24-31.21
pathogenic
GRCh37/hg19 4q12-31.21(chr4:52866944-143582507)x3 copy number gain not provided [RCV001827738] Chr4:52866944..143582507 [GRCh37]
Chr4:4q12-31.21
pathogenic
NM_006583.5(RRH):c.395T>G (p.Val132Gly) single nucleotide variant not specified [RCV004300858] Chr4:109835463 [GRCh38]
Chr4:110756619 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.253T>G (p.Ser85Ala) single nucleotide variant not specified [RCV004315592] Chr4:109833285 [GRCh38]
Chr4:110754441 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.394G>A (p.Val132Ile) single nucleotide variant not specified [RCV004136926] Chr4:109835462 [GRCh38]
Chr4:110756618 [GRCh37]
Chr4:4q25
likely benign
NM_006583.5(RRH):c.857C>G (p.Ser286Cys) single nucleotide variant not specified [RCV004086600] Chr4:109842605 [GRCh38]
Chr4:110763761 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.440G>C (p.Gly147Ala) single nucleotide variant not specified [RCV004124283] Chr4:109836049 [GRCh38]
Chr4:110757205 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.949A>G (p.Met317Val) single nucleotide variant not specified [RCV004099212] Chr4:109844132 [GRCh38]
Chr4:110765288 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.32A>G (p.Asp11Gly) single nucleotide variant not specified [RCV004096363] Chr4:109828059 [GRCh38]
Chr4:110749215 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.731T>G (p.Ile244Ser) single nucleotide variant not specified [RCV004215590] Chr4:109842479 [GRCh38]
Chr4:110763635 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.452A>G (p.Asn151Ser) single nucleotide variant not specified [RCV004257744] Chr4:109836061 [GRCh38]
Chr4:110757217 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.539G>A (p.Arg180Lys) single nucleotide variant not specified [RCV004345394] Chr4:109836148 [GRCh38]
Chr4:110757304 [GRCh37]
Chr4:4q25
uncertain significance
GRCh37/hg19 4q24-35.2(chr4:101203509-190957473)x3 copy number gain not specified [RCV003986496] Chr4:101203509..190957473 [GRCh37]
Chr4:4q24-35.2
pathogenic
GRCh37/hg19 4p12-q35.2(chr4:45455621-191003541)x3 copy number gain not provided [RCV003885507] Chr4:45455621..191003541 [GRCh37]
Chr4:4p12-q35.2
pathogenic
NM_006583.5(RRH):c.866A>G (p.Tyr289Cys) single nucleotide variant not specified [RCV004452323] Chr4:109842614 [GRCh38]
Chr4:110763770 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.511A>G (p.Thr171Ala) single nucleotide variant not specified [RCV004452321] Chr4:109836120 [GRCh38]
Chr4:110757276 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.241A>C (p.Met81Leu) single nucleotide variant not specified [RCV004452318] Chr4:109833273 [GRCh38]
Chr4:110754429 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.281G>T (p.Gly94Val) single nucleotide variant not specified [RCV004452319] Chr4:109833313 [GRCh38]
Chr4:110754469 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.49G>A (p.Gly17Ser) single nucleotide variant not specified [RCV004452320] Chr4:109828076 [GRCh38]
Chr4:110749232 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.823A>G (p.Met275Val) single nucleotide variant not specified [RCV004452322] Chr4:109842571 [GRCh38]
Chr4:110763727 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.920C>A (p.Ala307Asp) single nucleotide variant not specified [RCV004452324] Chr4:109844103 [GRCh38]
Chr4:110765259 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.404G>A (p.Arg135Lys) single nucleotide variant not specified [RCV004665893] Chr4:109836013 [GRCh38]
Chr4:110757169 [GRCh37]
Chr4:4q25
uncertain significance
NC_000004.11:g.(?_110481494)_(111554154_?)dup duplication not provided [RCV004580809] Chr4:110481494..111554154 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.668A>G (p.Asp223Gly) single nucleotide variant not specified [RCV004665894] Chr4:109837553 [GRCh38]
Chr4:110758709 [GRCh37]
Chr4:4q25
uncertain significance
NM_006583.5(RRH):c.80T>C (p.Ile27Thr) single nucleotide variant not specified [RCV004674281] Chr4:109828107 [GRCh38]
Chr4:110749263 [GRCh37]
Chr4:4q25
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:150
Interacting mature miRNAs:156
Transcripts:ENST00000317735
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human
597034311GWAS1130385_Hbody height QTL GWAS1130385 (human)2e-10body height (VT:0001253)body height (CMO:0000106)4109834165109834166Human
597286397GWAS1382471_Hbody weight QTL GWAS1382471 (human)3e-08body mass (VT:0001259)body weight (CMO:0000012)4109829417109829418Human
597344672GWAS1440746_Hcolor vision disorder QTL GWAS1440746 (human)1e-10color vision disorder4109831805109831806Human
597116345GWAS1212419_HDNA methylation QTL GWAS1212419 (human)3e-09DNA methylation4109836068109836069Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1173 2313 2679 2012 4863 1664 2233 2 571 1228 413 2207 6122 5433 51 3673 799 1658 1555 168 1

Sequence


Ensembl Acc Id: ENST00000317735   ⟹   ENSP00000314992
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4109,827,972 - 109,844,942 (+)Ensembl
Ensembl Acc Id: ENST00000650907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4109,831,975 - 109,845,695 (+)Ensembl
Ensembl Acc Id: ENST00000652276   ⟹   ENSP00000498977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4109,833,139 - 109,849,123 (+)Ensembl
RefSeq Acc Id: NM_006583   ⟹   NP_006574
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384109,827,972 - 109,844,942 (+)NCBI
GRCh374110,749,150 - 110,765,863 (+)RGD
Build 364110,968,599 - 110,985,312 (+)NCBI Archive
Celera4108,042,720 - 108,059,581 (+)RGD
HuRef4106,481,266 - 106,497,986 (+)RGD
CHM1_14110,725,638 - 110,742,332 (+)NCBI
T2T-CHM13v2.04113,130,031 - 113,147,001 (+)NCBI
Sequence:
RefSeq Acc Id: NP_006574   ⟸   NM_006583
- UniProtKB: O14718 (UniProtKB/Swiss-Prot),   A1A4V2 (UniProtKB/Swiss-Prot),   Q7RTS4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000498977   ⟸   ENST00000652276
Ensembl Acc Id: ENSP00000314992   ⟸   ENST00000317735
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O14718-F1-model_v2 AlphaFold O14718 1-337 view protein structure

Promoters
RGD ID:6868268
Promoter ID:EPDNEW_H7299
Type:initiation region
Name:RRH_1
Description:retinal pigment epithelium-derived rhodopsin homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384109,827,994 - 109,828,054EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:10450 AgrOrtholog
COSMIC RRH COSMIC
Ensembl Genes ENSG00000180245 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000317735 ENTREZGENE
  ENST00000317735.7 UniProtKB/Swiss-Prot
  ENST00000652276.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000180245 GTEx
HGNC ID HGNC:10450 ENTREZGENE
Human Proteome Map RRH Human Proteome Map
InterPro GPCR_opsins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peropsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Retinal_BS UniProtKB/Swiss-Prot
KEGG Report hsa:10692 UniProtKB/Swiss-Prot
NCBI Gene 10692 ENTREZGENE
OMIM 605224 OMIM
PANTHER OPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34865 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PEROPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OPSIN UniProtKB/Swiss-Prot
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494C1B2_HUMAN UniProtKB/TrEMBL
  A1A4V2 ENTREZGENE
  O14718 ENTREZGENE, UniProtKB/Swiss-Prot
  Q7RTS4 ENTREZGENE
UniProt Secondary A1A4V2 UniProtKB/Swiss-Prot
  Q7RTS4 UniProtKB/Swiss-Prot