CSRNP2 (cysteine and serine rich nuclear protein 2) - Rat Genome Database

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Gene: CSRNP2 (cysteine and serine rich nuclear protein 2) Homo sapiens
Analyze
Symbol: CSRNP2
Name: cysteine and serine rich nuclear protein 2
RGD ID: 1318958
HGNC Page HGNC:16006
Description: Enables phosphatase binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Located in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C12orf2; C12orf22; chromosome 12 open reading frame 22; CSRNP-2; cysteine-serine-rich nuclear protein 2; cysteine/serine-rich nuclear protein 2; FAM130A1; family with sequence similarity 130, member A1; FLJ25576; PPP1R72; protein phosphatase 1, regulatory subunit 72; TAIP-12; TGF-beta-induced apoptosis protein 12
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381251,061,205 - 51,083,596 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1251,061,205 - 51,083,664 (-)EnsemblGRCh38hg38GRCh38
GRCh371251,454,988 - 51,477,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,741,257 - 49,763,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 341249,741,256 - 49,763,600NCBI
Celera1250,256,977 - 50,278,325 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1248,487,275 - 48,509,793 (-)NCBIHuRef
CHM1_11251,421,266 - 51,443,654 (-)NCBICHM1_1
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (ISA)
nucleus  (IBA,IDA,IEA,ISS)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8619474   PMID:8889548   PMID:9110174   PMID:12477932   PMID:15231748   PMID:15489334   PMID:16344560   PMID:17726538   PMID:19389623   PMID:20800603   PMID:21873635   PMID:25416956  
PMID:26186194   PMID:26760575   PMID:28514442   PMID:29892012   PMID:32296183   PMID:33961781  


Genomics

Comparative Map Data
CSRNP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381251,061,205 - 51,083,596 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1251,061,205 - 51,083,664 (-)EnsemblGRCh38hg38GRCh38
GRCh371251,454,988 - 51,477,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,741,257 - 49,763,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 341249,741,256 - 49,763,600NCBI
Celera1250,256,977 - 50,278,325 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1248,487,275 - 48,509,793 (-)NCBIHuRef
CHM1_11251,421,266 - 51,443,654 (-)NCBICHM1_1
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBIT2T-CHM13v2.0
Csrnp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,377,451 - 100,393,120 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,377,451 - 100,393,369 (-)EnsemblGRCm39 Ensembl
GRCm3815100,479,570 - 100,495,239 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,479,570 - 100,495,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715100,310,001 - 100,325,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615100,307,604 - 100,323,273 (-)NCBIMGSCv36mm8
Celera15102,631,828 - 102,647,498 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.32NCBI
Csrnp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,473,027 - 133,488,868 (-)NCBIGRCr8
mRatBN7.27131,594,232 - 131,610,075 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,594,232 - 131,610,075 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,396,399 - 133,412,237 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07135,621,976 - 135,637,814 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07135,535,630 - 135,551,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,116,335 - 142,132,173 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,116,335 - 142,132,173 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,923,806 - 139,939,644 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,182,243 - 139,198,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17139,261,070 - 139,268,389 (-)NCBI
Celera7128,071,529 - 128,087,360 (-)NCBICelera
Cytogenetic Map7q36NCBI
Csrnp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555471,586,517 - 1,595,567 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555471,584,061 - 1,601,556 (-)NCBIChiLan1.0ChiLan1.0
CSRNP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21043,102,384 - 43,124,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11243,099,054 - 43,121,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01237,669,834 - 37,692,198 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11238,572,622 - 38,596,949 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,579,787 - 38,594,411 (+)Ensemblpanpan1.1panPan2
CSRNP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,744,896 - 3,759,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,750,509 - 3,759,442 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2742,496,695 - 42,511,358 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,792,281 - 3,806,963 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,793,549 - 3,808,849 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,764,415 - 3,773,710 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,746,414 - 3,761,072 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,893,439 - 42,907,726 (-)NCBIUU_Cfam_GSD_1.0
Csrnp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,454,800 - 64,470,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,693,940 - 8,710,030 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365128,693,940 - 8,710,030 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRNP2
(Sus scrofa - pig)
No map positions available.
CSRNP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11147,270,936 - 47,293,243 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,270,846 - 47,293,151 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037198,806,613 - 198,829,761 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csrnp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248161,149,623 - 1,159,407 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248161,144,923 - 1,161,885 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CSRNP2
27 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_030809.2(CSRNP2):c.411+1906T>G single nucleotide variant Lung cancer [RCV000111103] Chr12:51071917 [GRCh38]
Chr12:51465700 [GRCh37]
Chr12:12q13.12
uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q13.12-13.13(chr12:50633888-52851909)x1 copy number loss See cases [RCV000140716] Chr12:50633888..52851909 [GRCh38]
Chr12:51027671..53245693 [GRCh37]
Chr12:49313938..51531960 [NCBI36]
Chr12:12q13.12-13.13
pathogenic
GRCh38/hg38 12q13.12-13.13(chr12:50122359-53248460)x1 copy number loss See cases [RCV000142033] Chr12:50122359..53248460 [GRCh38]
Chr12:50516142..53642244 [GRCh37]
Chr12:48802409..51928511 [NCBI36]
Chr12:12q13.12-13.13
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NC_000012.11:g.26370251_54361538inv inversion not specified [RCV000714265] Chr12:26370251..54361538 [GRCh37]
Chr12:12p12.1-q13.13
uncertain significance
NM_030809.3(CSRNP2):c.170G>A (p.Arg57Gln) single nucleotide variant Inborn genetic diseases [RCV003251610] Chr12:51074064 [GRCh38]
Chr12:51467847 [GRCh37]
Chr12:12q13.12
uncertain significance
GRCh37/hg19 12q13.12-13.13(chr12:51361462-51751521)x3 copy number gain not provided [RCV000683429] Chr12:51361462..51751521 [GRCh37]
Chr12:12q13.12-13.13
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_030809.3(CSRNP2):c.14C>T (p.Thr5Met) single nucleotide variant Inborn genetic diseases [RCV003247792] Chr12:51076548 [GRCh38]
Chr12:51470331 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.865G>A (p.Ala289Thr) single nucleotide variant Inborn genetic diseases [RCV003249267] Chr12:51064513 [GRCh38]
Chr12:51458296 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.125A>G (p.Asn42Ser) single nucleotide variant Inborn genetic diseases [RCV002748950] Chr12:51076437 [GRCh38]
Chr12:51470220 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1288G>A (p.Val430Met) single nucleotide variant Inborn genetic diseases [RCV003012615] Chr12:51064090 [GRCh38]
Chr12:51457873 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.845G>A (p.Arg282Gln) single nucleotide variant Inborn genetic diseases [RCV002880092] Chr12:51064533 [GRCh38]
Chr12:51458316 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1612G>C (p.Glu538Gln) single nucleotide variant Inborn genetic diseases [RCV002739626] Chr12:51063766 [GRCh38]
Chr12:51457549 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1426G>A (p.Gly476Arg) single nucleotide variant Inborn genetic diseases [RCV002924844] Chr12:51063952 [GRCh38]
Chr12:51457735 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1304G>C (p.Gly435Ala) single nucleotide variant Inborn genetic diseases [RCV002692888] Chr12:51064074 [GRCh38]
Chr12:51457857 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1145A>G (p.Gln382Arg) single nucleotide variant Inborn genetic diseases [RCV003001392] Chr12:51064233 [GRCh38]
Chr12:51458016 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.541A>G (p.Lys181Glu) single nucleotide variant Inborn genetic diseases [RCV002797491] Chr12:51067840 [GRCh38]
Chr12:51461623 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1284G>T (p.Leu428Phe) single nucleotide variant Inborn genetic diseases [RCV002926538] Chr12:51064094 [GRCh38]
Chr12:51457877 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1493A>T (p.Asp498Val) single nucleotide variant Inborn genetic diseases [RCV002713622] Chr12:51063885 [GRCh38]
Chr12:51457668 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1522C>G (p.Leu508Val) single nucleotide variant Inborn genetic diseases [RCV003004833] Chr12:51063856 [GRCh38]
Chr12:51457639 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.293G>A (p.Arg98His) single nucleotide variant Inborn genetic diseases [RCV002743639] Chr12:51073941 [GRCh38]
Chr12:51467724 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1072G>A (p.Val358Met) single nucleotide variant Inborn genetic diseases [RCV002984785] Chr12:51064306 [GRCh38]
Chr12:51458089 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1060G>A (p.Glu354Lys) single nucleotide variant Inborn genetic diseases [RCV002641934] Chr12:51064318 [GRCh38]
Chr12:51458101 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1225C>G (p.Pro409Ala) single nucleotide variant Inborn genetic diseases [RCV002898127] Chr12:51064153 [GRCh38]
Chr12:51457936 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1532G>A (p.Arg511His) single nucleotide variant Inborn genetic diseases [RCV002936388] Chr12:51063846 [GRCh38]
Chr12:51457629 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.653G>A (p.Arg218Gln) single nucleotide variant Inborn genetic diseases [RCV002674633] Chr12:51067728 [GRCh38]
Chr12:51461511 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1214C>T (p.Thr405Met) single nucleotide variant Inborn genetic diseases [RCV003175954] Chr12:51064164 [GRCh38]
Chr12:51457947 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.127C>G (p.Pro43Ala) single nucleotide variant Inborn genetic diseases [RCV003200254] Chr12:51076435 [GRCh38]
Chr12:51470218 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.36G>T (p.Lys12Asn) single nucleotide variant Inborn genetic diseases [RCV003212033] Chr12:51076526 [GRCh38]
Chr12:51470309 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.764C>T (p.Ala255Val) single nucleotide variant Inborn genetic diseases [RCV003200562] Chr12:51064614 [GRCh38]
Chr12:51458397 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.1568C>A (p.Thr523Asn) single nucleotide variant Inborn genetic diseases [RCV003214195] Chr12:51063810 [GRCh38]
Chr12:51457593 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_030809.3(CSRNP2):c.188G>A (p.Arg63Lys) single nucleotide variant Inborn genetic diseases [RCV003203395] Chr12:51074046 [GRCh38]
Chr12:51467829 [GRCh37]
Chr12:12q13.12
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2466
Count of miRNA genes:1090
Interacting mature miRNAs:1325
Transcripts:ENST00000228515, ENST00000546935, ENST00000548206, ENST00000548981, ENST00000550461, ENST00000550533, ENST00000552680, ENST00000552899
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D12S1568  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371251,455,085 - 51,455,143UniSTSGRCh37
Build 361249,741,352 - 49,741,410RGDNCBI36
Celera1250,257,072 - 50,257,130RGD
Cytogenetic Map12q13.11-q13.12UniSTS
HuRef1248,487,372 - 48,487,430UniSTS
D12S1401  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371251,455,037 - 51,455,189UniSTSGRCh37
Build 361249,741,304 - 49,741,456RGDNCBI36
Celera1250,257,024 - 50,257,176RGD
Cytogenetic Map12q13.11-q13.12UniSTS
HuRef1248,487,324 - 48,487,476UniSTS
GeneMap99-GB4 RH Map12224.35UniSTS
Whitehead-RH Map12320.4UniSTS
A004B24  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371251,455,026 - 51,455,189UniSTSGRCh37
Build 361249,741,293 - 49,741,456RGDNCBI36
Celera1250,257,013 - 50,257,176RGD
Cytogenetic Map12q13.11-q13.12UniSTS
HuRef1248,487,313 - 48,487,476UniSTS
GeneMap99-GB4 RH Map12222.2UniSTS
A009B06  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371251,456,269 - 51,456,368UniSTSGRCh37
Build 361249,742,536 - 49,742,635RGDNCBI36
Celera1250,258,256 - 50,258,355RGD
Cytogenetic Map12q13.11-q13.12UniSTS
HuRef1248,488,556 - 48,488,655UniSTS
GeneMap99-GB4 RH Map12225.96UniSTS
NCBI RH Map12415.3UniSTS
G32373  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371251,456,269 - 51,456,368UniSTSGRCh37
Celera1250,258,256 - 50,258,355UniSTS
Cytogenetic Map12q13.11-q13.12UniSTS
HuRef1248,488,556 - 48,488,655UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1950 1573 1263 194 803 75 3852 1429 3104 289 1419 1578 135 1 1179 2379 4 1
Low 489 1408 463 430 1137 390 505 768 630 130 41 35 40 25 409 2 1
Below cutoff 10 11

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_030809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_045072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006719621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB063302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ298133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM975428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB059091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB460042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF455649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000228515   ⟹   ENSP00000228515
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,061,205 - 51,083,596 (-)Ensembl
RefSeq Acc Id: ENST00000546935   ⟹   ENSP00000449152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,074,058 - 51,083,583 (-)Ensembl
RefSeq Acc Id: ENST00000548206   ⟹   ENSP00000447983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,067,899 - 51,083,582 (-)Ensembl
RefSeq Acc Id: ENST00000548981   ⟹   ENSP00000447657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,073,890 - 51,083,643 (-)Ensembl
RefSeq Acc Id: ENST00000550461
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,076,569 - 51,083,596 (-)Ensembl
RefSeq Acc Id: ENST00000550533
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,073,928 - 51,076,835 (-)Ensembl
RefSeq Acc Id: ENST00000552680
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,076,416 - 51,083,664 (-)Ensembl
RefSeq Acc Id: ENST00000552899   ⟹   ENSP00000447065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1251,073,975 - 51,083,110 (-)Ensembl
RefSeq Acc Id: NM_030809   ⟹   NP_110436
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
GRCh371251,454,988 - 51,477,454 (-)NCBI
Build 361249,741,257 - 49,763,600 (-)NCBI Archive
Celera1250,256,977 - 50,278,325 (-)RGD
HuRef1248,487,275 - 48,509,793 (-)NCBI
CHM1_11251,421,266 - 51,443,654 (-)NCBI
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
Sequence:
RefSeq Acc Id: NR_045072
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
GRCh371251,454,988 - 51,477,454 (-)NCBI
HuRef1248,487,275 - 48,509,793 (-)NCBI
CHM1_11251,421,266 - 51,443,637 (-)NCBI
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449210   ⟹   XP_024304978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449211   ⟹   XP_024304979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,080,099 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449212   ⟹   XP_024304980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,079,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449213   ⟹   XP_024304981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449214   ⟹   XP_024304982
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449215   ⟹   XP_024304983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449216   ⟹   XP_024304984
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047429617   ⟹   XP_047285573
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
RefSeq Acc Id: XM_047429618   ⟹   XP_047285574
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
RefSeq Acc Id: XM_047429619   ⟹   XP_047285575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
RefSeq Acc Id: XM_047429620   ⟹   XP_047285576
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
RefSeq Acc Id: XM_047429621   ⟹   XP_047285577
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,061,205 - 51,083,596 (-)NCBI
RefSeq Acc Id: XM_054373354   ⟹   XP_054229329
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
RefSeq Acc Id: XM_054373355   ⟹   XP_054229330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
RefSeq Acc Id: XM_054373356   ⟹   XP_054229331
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
RefSeq Acc Id: XM_054373357   ⟹   XP_054229332
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
RefSeq Acc Id: XM_054373358   ⟹   XP_054229333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
RefSeq Acc Id: XM_054373359   ⟹   XP_054229334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,513 (-)NCBI
RefSeq Acc Id: XM_054373360   ⟹   XP_054229335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
RefSeq Acc Id: XM_054373361   ⟹   XP_054229336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,046,514 (-)NCBI
RefSeq Acc Id: XM_054373362   ⟹   XP_054229337
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,043,013 (-)NCBI
RefSeq Acc Id: XM_054373363   ⟹   XP_054229338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01251,024,095 - 51,042,709 (-)NCBI
Protein Sequences
Protein RefSeqs NP_110436 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304978 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304979 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304980 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304981 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304982 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304983 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304984 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285573 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285574 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285575 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285576 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285577 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229329 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229330 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229331 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229332 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229333 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229334 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229335 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229336 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229337 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229338 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH17221 (Get FASTA)   NCBI Sequence Viewer  
  BAB79451 (Get FASTA)   NCBI Sequence Viewer  
  BAG35906 (Get FASTA)   NCBI Sequence Viewer  
  CAC22252 (Get FASTA)   NCBI Sequence Viewer  
  EAW58173 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000228515
  ENSP00000228515.1
  ENSP00000447065.1
  ENSP00000447657.1
  ENSP00000447983.1
  ENSP00000449152.1
GenBank Protein Q9H175 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_110436   ⟸   NM_030809
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304984   ⟸   XM_024449216
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304982   ⟸   XM_024449214
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304983   ⟸   XM_024449215
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304981   ⟸   XM_024449213
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304978   ⟸   XM_024449210
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304979   ⟸   XM_024449211
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304980   ⟸   XM_024449212
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000228515   ⟸   ENST00000228515
RefSeq Acc Id: ENSP00000449152   ⟸   ENST00000546935
RefSeq Acc Id: ENSP00000447657   ⟸   ENST00000548981
RefSeq Acc Id: ENSP00000447983   ⟸   ENST00000548206
RefSeq Acc Id: ENSP00000447065   ⟸   ENST00000552899
RefSeq Acc Id: XP_047285577   ⟸   XM_047429621
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047285575   ⟸   XM_047429619
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047285574   ⟸   XM_047429618
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047285576   ⟸   XM_047429620
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047285573   ⟸   XM_047429617
- Peptide Label: isoform X1
- UniProtKB: Q9H175 (UniProtKB/Swiss-Prot),   B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229332   ⟸   XM_054373357
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229329   ⟸   XM_054373354
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229335   ⟸   XM_054373360
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229336   ⟸   XM_054373361
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229330   ⟸   XM_054373355
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229333   ⟸   XM_054373358
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229331   ⟸   XM_054373356
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229334   ⟸   XM_054373359
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229337   ⟸   XM_054373362
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054229338   ⟸   XM_054373363
- Peptide Label: isoform X1
- UniProtKB: B2R7Q9 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H175-F1-model_v2 AlphaFold Q9H175 1-543 view protein structure

Promoters
RGD ID:6815028
Promoter ID:HG_MRA:3630
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:AF052105,   BC010133
Position:
Human AssemblyChrPosition (strand)Source
Build 361249,743,626 - 49,744,126 (-)MPROMDB
RGD ID:6789833
Promoter ID:HG_KWN:15645
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_030809
Position:
Human AssemblyChrPosition (strand)Source
Build 361249,763,431 - 49,763,931 (-)MPROMDB
RGD ID:7223919
Promoter ID:EPDNEW_H17705
Type:initiation region
Name:CSRNP2_1
Description:cysteine and serine rich nuclear protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381251,083,596 - 51,083,656EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:16006 AgrOrtholog
COSMIC CSRNP2 COSMIC
Ensembl Genes ENSG00000110925 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000228515 ENTREZGENE
  ENST00000228515.6 UniProtKB/Swiss-Prot
  ENST00000546935.5 UniProtKB/TrEMBL
  ENST00000548206.1 UniProtKB/TrEMBL
  ENST00000548981.5 UniProtKB/TrEMBL
  ENST00000552899.5 UniProtKB/TrEMBL
GTEx ENSG00000110925 GTEx
HGNC ID HGNC:16006 ENTREZGENE
Human Proteome Map CSRNP2 Human Proteome Map
InterPro CSRNP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cys/Ser-rich_nuc_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:81566 UniProtKB/Swiss-Prot
NCBI Gene 81566 ENTREZGENE
OMIM 620404 OMIM
PANTHER CYSTEINE/SERINE-RICH NUCLEAR PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13580 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CSRNP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA25503 PharmGKB
PRINTS CYSSERRICHNP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2R7Q9 ENTREZGENE, UniProtKB/TrEMBL
  CSRN2_HUMAN UniProtKB/Swiss-Prot
  F8VTU0_HUMAN UniProtKB/TrEMBL
  F8VVN1_HUMAN UniProtKB/TrEMBL
  F8VZY2_HUMAN UniProtKB/TrEMBL
  F8W1G8_HUMAN UniProtKB/TrEMBL
  Q9H175 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 CSRNP2  cysteine and serine rich nuclear protein 2  CSRNP2  cysteine-serine-rich nuclear protein 2  Symbol and/or name change 5135510 APPROVED