Trmt6 (tRNA methyltransferase 6) - Rat Genome Database

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Gene: Trmt6 (tRNA methyltransferase 6) Mus musculus
Analyze
Symbol: Trmt6
Name: tRNA methyltransferase 6
RGD ID: 1318901
MGI Page MGI
Description: Predicted to be involved in mRNA methylation and tRNA methylation. Predicted to act upstream of or within tRNA processing. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Is expressed in brain ventricular layer; cerebral cortex subventricular zone; olfactory epithelium; submandibular gland primordium; and thymus primordium. Orthologous to human TRMT6 (tRNA methyltransferase 6 non-catalytic subunit).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3300001M20Rik; AU016412; AW492787; CGI-09; mKIAA1153; mRNA methyladenosine-N(1)-methyltransferase non-catalytic subunit TRM6; RP23-77H16.2; tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6; tRNA methyltransferase 6 homolog; tRNA(m1A58)-methyltransferase subunit TRM6; tRNA(m1A58)MTase subunit TRM6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,646,127 - 132,658,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,646,127 - 132,657,975 (-)EnsemblGRCm39 Ensembl
GRCm382132,804,207 - 132,816,054 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,804,207 - 132,816,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,629,951 - 132,641,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,495,656 - 132,507,496 (-)NCBIMGSCv36mm8
Celera2134,031,674 - 134,043,498 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:32325033   PMID:34321999   PMID:36138184  


Genomics

Comparative Map Data
Trmt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,646,127 - 132,658,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,646,127 - 132,657,975 (-)EnsemblGRCm39 Ensembl
GRCm382132,804,207 - 132,816,054 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,804,207 - 132,816,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,629,951 - 132,641,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,495,656 - 132,507,496 (-)NCBIMGSCv36mm8
Celera2134,031,674 - 134,043,498 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.74NCBI
TRMT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38205,937,228 - 5,950,533 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl205,937,228 - 5,950,558 (-)EnsemblGRCh38hg38GRCh38
GRCh37205,917,874 - 5,931,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,866,486 - 5,879,173 (-)NCBINCBI36Build 36hg18NCBI36
Celera205,990,095 - 6,002,785 (-)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef205,875,029 - 5,887,738 (-)NCBIHuRef
CHM1_1205,918,869 - 5,931,593 (-)NCBICHM1_1
T2T-CHM13v2.0205,977,563 - 5,990,868 (-)NCBIT2T-CHM13v2.0
Trmt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83140,527,785 - 140,539,520 (-)NCBIGRCr8
mRatBN7.23120,074,899 - 120,086,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3120,074,911 - 120,086,559 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3123,969,956 - 123,981,674 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03132,573,585 - 132,585,306 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03130,226,090 - 130,237,808 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03125,458,692 - 125,470,413 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,458,692 - 125,470,413 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,942,467 - 131,954,194 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,602,570 - 120,614,291 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13120,509,438 - 120,519,743 (-)NCBI
Celera3118,860,870 - 118,872,591 (-)NCBICelera
Cytogenetic Map3q36NCBI
Trmt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,330,482 - 16,344,973 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541516,333,766 - 16,390,112 (-)NCBIChiLan1.0ChiLan1.0
TRMT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,859,872 - 6,872,629 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,856,698 - 6,869,445 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0205,932,217 - 5,944,930 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1205,715,016 - 5,727,726 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl205,715,015 - 5,727,726 (-)Ensemblpanpan1.1panPan2
TRMT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12415,836,359 - 15,905,147 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2415,893,335 - 15,903,889 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2415,658,478 - 15,728,233 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,238,910 - 16,308,685 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,296,017 - 16,315,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12415,845,681 - 15,915,204 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02415,953,824 - 16,023,561 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,285,565 - 16,355,086 (+)NCBIUU_Cfam_GSD_1.0
Trmt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640164,677,074 - 164,689,921 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,108,588 - 13,119,939 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,108,450 - 13,121,276 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,777,683 - 14,965,130 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11714,777,683 - 14,790,318 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,885,122 - 15,896,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,181,276 - 32,195,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,181,279 - 32,195,019 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607112,346,452 - 12,360,021 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trmt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,775,944 - 6,788,161 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,774,767 - 6,787,461 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trmt6
487 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:689
Count of miRNA genes:422
Interacting mature miRNAs:488
Transcripts:ENSMUST00000039554, ENSMUST00000127855, ENSMUST00000136897, ENSMUST00000145117, ENSMUST00000147336, ENSMUST00000152836
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128173704132714157Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13207586Mwmlpt2_mMorris water maze latency to platform, training, 2 (mouse)2131616184139216184Mouse
13207590Mwmlpa2_mMorris water maze latency to platform, all, 2 (mouse)2131616184139616184Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse

Markers in Region
AW492787  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,804,357 - 132,804,436UniSTSGRCm38
MGSCv372132,630,093 - 132,630,172UniSTSGRCm37
Celera2134,031,816 - 134,031,895UniSTS
Cytogenetic Map2F2UniSTS
Whitehead/MRC_RH21641.69UniSTS
AU016412  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,804,412 - 132,804,613UniSTSGRCm38
MGSCv372132,630,148 - 132,630,349UniSTSGRCm37
Celera2134,031,871 - 134,032,072UniSTS
Cytogenetic Map2F2UniSTS
Whitehead/MRC_RH21641.31UniSTS
RH138707  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,811,041 - 132,812,154UniSTSGRCm38
MGSCv372132,636,777 - 132,637,890UniSTSGRCm37
Celera2134,038,483 - 134,039,596UniSTS
Cytogenetic Map2F2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000039554   ⟹   ENSMUSP00000044687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,646,127 - 132,657,974 (-)Ensembl
GRCm38.p6 Ensembl2132,804,207 - 132,816,054 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,653,687 - 132,657,933 (-)Ensembl
GRCm38.p6 Ensembl2132,811,767 - 132,816,013 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,652,362 - 132,654,427 (-)Ensembl
GRCm38.p6 Ensembl2132,810,442 - 132,812,507 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,652,337 - 132,657,678 (-)Ensembl
GRCm38.p6 Ensembl2132,810,417 - 132,815,758 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,646,127 - 132,657,975 (-)Ensembl
GRCm38.p6 Ensembl2132,804,207 - 132,816,055 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,646,127 - 132,652,555 (-)Ensembl
GRCm38.p6 Ensembl2132,804,207 - 132,810,635 (-)Ensembl
RefSeq Acc Id: NM_001356442   ⟹   NP_001343371
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,646,135 - 132,657,974 (-)NCBI
GRCm382132,804,215 - 132,816,054 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356443   ⟹   NP_001343372
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,646,135 - 132,657,974 (-)NCBI
GRCm382132,804,215 - 132,816,054 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356444   ⟹   NP_001343373
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,646,135 - 132,657,974 (-)NCBI
GRCm382132,804,215 - 132,816,054 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175113   ⟹   NP_780322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,646,135 - 132,657,974 (-)NCBI
GRCm382132,804,215 - 132,816,054 (-)NCBI
MGSCv372132,629,951 - 132,641,790 (-)RGD
Celera2134,031,674 - 134,043,498 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030251972   ⟹   XP_030107832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,646,127 - 132,657,957 (-)NCBI
GRCm382132,804,207 - 132,816,037 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162501   ⟹   XP_036018394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,646,127 - 132,658,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162502   ⟹   XP_036018395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,646,127 - 132,657,784 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780322   ⟸   NM_175113
- Peptide Label: isoform 1
- UniProtKB: Q80Y59 (UniProtKB/Swiss-Prot),   Q6ZPW8 (UniProtKB/Swiss-Prot),   Q3TME7 (UniProtKB/Swiss-Prot),   Q3TJZ8 (UniProtKB/Swiss-Prot),   Q8CEU0 (UniProtKB/Swiss-Prot),   Q8CE96 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030107832   ⟸   XM_030251972
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001343373   ⟸   NM_001356444
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001343371   ⟸   NM_001356442
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001343372   ⟸   NM_001356443
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000044687   ⟸   ENSMUST00000039554
RefSeq Acc Id: XP_036018394   ⟸   XM_036162501
- Peptide Label: isoform X1
- UniProtKB: Q8CE96 (UniProtKB/Swiss-Prot),   Q80Y59 (UniProtKB/Swiss-Prot),   Q6ZPW8 (UniProtKB/Swiss-Prot),   Q3TME7 (UniProtKB/Swiss-Prot),   Q3TJZ8 (UniProtKB/Swiss-Prot),   Q8CEU0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036018395   ⟸   XM_036162502
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CE96-F1-model_v2 AlphaFold Q8CE96 1-497 view protein structure

Promoters
RGD ID:6831780
Promoter ID:MM_KWN:31872
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000110126,   OTTMUST00000037177,   OTTMUST00000037178,   OTTMUST00000037180,   OTTMUST00000037181,   OTTMUST00000037183,   OTTMUST00000037184,   UC008MNJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362132,641,569 - 132,642,069 (+)MPROMDB
RGD ID:6878864
Promoter ID:EPDNEW_M2883
Type:initiation region
Name:Trmt6_1
Description:Mus musculus tRNA methyltransferase 6 , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,816,005 - 132,816,065EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914176 AgrOrtholog
Ensembl Genes ENSMUSG00000037376 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039554 ENTREZGENE
  ENSMUST00000039554.7 UniProtKB/Swiss-Prot
  ENSMUST00000147336 ENTREZGENE
InterPro TRM6 UniProtKB/Swiss-Prot
KEGG Report mmu:66926 UniProtKB/Swiss-Prot
MGD MGI:1914176 ENTREZGENE
NCBI Gene 66926 ENTREZGENE
PANTHER PTHR12945 UniProtKB/Swiss-Prot
  TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6 UniProtKB/Swiss-Prot
Pfam Gcd10p UniProtKB/Swiss-Prot
PhenoGen Trmt6 PhenoGen
PIRSF tRNA_m1A_mtfrase UniProtKB/Swiss-Prot
UniProt Q3TJZ8 ENTREZGENE
  Q3TME7 ENTREZGENE
  Q6ZPW8 ENTREZGENE
  Q80Y59 ENTREZGENE
  Q8CE96 ENTREZGENE
  Q8CEU0 ENTREZGENE
  TRM6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TJZ8 UniProtKB/Swiss-Prot
  Q3TME7 UniProtKB/Swiss-Prot
  Q6ZPW8 UniProtKB/Swiss-Prot
  Q80Y59 UniProtKB/Swiss-Prot
  Q8CEU0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Trmt6  tRNA methyltransferase 6    tRNA methyltransferase 6 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED