Gpc5 (glypican 5) - Rat Genome Database

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Gene: Gpc5 (glypican 5) Mus musculus
Analyze
Symbol: Gpc5
Name: glypican 5
RGD ID: 1318836
MGI Page MGI
Description: Predicted to be involved in cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of protein localization to membrane. Predicted to be located in plasma membrane. Predicted to be active in cell surface. Is expressed in brain; limb; lower jaw; metanephros; and spinal cord mantle layer. Orthologous to human GPC5 (glypican 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A230034F01Rik; glypican-5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914115,329,640 - 116,762,604 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14115,329,647 - 116,762,591 (+)EnsemblGRCm39 Ensembl
GRCm3814115,092,201 - 116,525,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14115,092,215 - 116,525,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714115,491,437 - 116,924,414 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614113,974,089 - 115,406,638 (+)NCBIMGSCv36mm8
Celera14113,683,044 - 115,103,380 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1459.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Localisation of specific heparan sulfate proteoglycans during the proliferative phase of brain development. Ford-Perriss M, etal., Dev Dyn 2003 Jun;227(2):170-84.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Dally-like core protein and its mammalian homologues mediate stimulatory and inhibitory effects on Hedgehog signal response. Williams EH, etal., Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5869-74. Epub 2010 Mar 15.
Additional References at PubMed
PMID:9331333   PMID:9438425   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17107664   PMID:18799693   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:21892160   PMID:22384374   PMID:23070814   PMID:23867465   PMID:23911103   PMID:24721909   PMID:25624497   PMID:25987249   PMID:26116392   PMID:26393505  
PMID:30578891   PMID:30973865   PMID:30977233   PMID:32201365   PMID:32220631   PMID:34474245   PMID:37408198  


Genomics

Comparative Map Data
Gpc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914115,329,640 - 116,762,604 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14115,329,647 - 116,762,591 (+)EnsemblGRCm39 Ensembl
GRCm3814115,092,201 - 116,525,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14115,092,215 - 116,525,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714115,491,437 - 116,924,414 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614113,974,089 - 115,406,638 (+)NCBIMGSCv36mm8
Celera14113,683,044 - 115,103,380 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1459.43NCBI
GPC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381391,398,621 - 92,867,237 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1391,398,621 - 92,873,682 (+)EnsemblGRCh38hg38GRCh38
GRCh371392,050,875 - 93,519,490 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361390,848,930 - 92,317,491 (+)NCBINCBI36Build 36hg18NCBI36
Build 341390,848,887 - 92,317,486NCBI
Celera1372,897,866 - 74,366,737 (+)NCBICelera
Cytogenetic Map13q31.3NCBI
HuRef1372,646,702 - 74,116,008 (+)NCBIHuRef
CHM1_11392,019,541 - 93,489,120 (+)NCBICHM1_1
T2T-CHM13v2.01390,601,154 - 92,070,908 (+)NCBIT2T-CHM13v2.0
Gpc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81598,614,499 - 100,051,285 (+)NCBIGRCr8
mRatBN7.21592,207,275 - 93,644,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1592,239,176 - 93,643,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1596,146,021 - 97,550,277 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01597,278,871 - 98,683,154 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01594,186,346 - 95,610,977 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015100,283,131 - 101,776,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015103,739,948 - 104,456,749 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.015105,221,065 - 105,224,752 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41599,917,274 - 101,353,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11599,932,834 - 100,716,974 (+)NCBI
Celera1591,103,971 - 92,504,072 (+)NCBICelera
Cytogenetic Map15q23-q24NCBI
Gpc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540416,827,833 - 18,091,256 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540416,824,366 - 18,091,464 (-)NCBIChiLan1.0ChiLan1.0
GPC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21492,946,967 - 94,407,470 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11391,613,624 - 92,365,064 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01372,588,968 - 74,051,961 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11391,755,264 - 93,206,407 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1391,755,623 - 93,205,610 (+)Ensemblpanpan1.1panPan2
GPC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12242,526,426 - 43,873,992 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2242,526,054 - 43,870,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2242,382,134 - 43,727,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02242,927,701 - 44,302,647 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2242,927,696 - 44,299,055 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12242,610,360 - 43,958,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02242,664,714 - 43,999,944 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02242,665,638 - 44,009,293 (+)NCBIUU_Cfam_GSD_1.0
Gpc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945178,229,811 - 178,459,961 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647217,492,183 - 17,708,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1160,791,363 - 62,147,239 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11160,791,000 - 62,149,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21166,666,602 - 67,323,189 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1370,294,405 - 71,729,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604626,678,549 - 28,148,799 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624779982,179 - 1,659,418 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624779982,178 - 1,712,772 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpc5
54185 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:356
Count of miRNA genes:261
Interacting mature miRNAs:281
Transcripts:ENSMUST00000022707, ENSMUST00000175665, ENSMUST00000176912, ENSMUST00000176993
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse
12798541Scvg3_msubcutaneous vessel growth QTL 3 (mouse)14105544636117275989Mouse
10755523Hgb2_mhemoglobin 2 (mouse)14105884654125139656Mouse
12903991Opfaq4_mopen field activity QTL 4 (mouse)14111211209118699845Mouse

Markers in Region
Gpc5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14E4UniSTS
cM Map14 UniSTS
BB303373  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814116,525,039 - 116,525,142UniSTSGRCm38
MGSCv3714116,924,261 - 116,924,364UniSTSGRCm37
Celera14115,103,227 - 115,103,330UniSTS
Cytogenetic Map14E4UniSTS
Whitehead/MRC_RH141195.44UniSTS
D14Mit118  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814116,226,745 - 116,226,882UniSTSGRCm38
MGSCv3714116,625,967 - 116,626,104UniSTSGRCm37
Celera14114,812,904 - 114,813,041UniSTS
Cytogenetic Map14E4UniSTS
cM Map1453.0UniSTS
Whitehead Genetic1462.3UniSTS
Whitehead/MRC_RH141195.74UniSTS
Whitehead_YAC14 UniSTS
D14Mit177  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814116,445,034 - 116,445,213UniSTSGRCm38
MGSCv3714116,844,256 - 116,844,435UniSTSGRCm37
Celera14115,026,773 - 115,026,960UniSTS
Cytogenetic Map14E4UniSTS
cM Map1454.0UniSTS
Whitehead Genetic1463.4UniSTS
Whitehead_YAC14 UniSTS
D14Mit199  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814116,353,862 - 116,354,036UniSTSGRCm38
MGSCv3714116,753,084 - 116,753,258UniSTSGRCm37
Celera14114,936,014 - 114,936,190UniSTS
Cytogenetic Map14E4UniSTS
cM Map1454.0UniSTS
Whitehead Genetic1463.4UniSTS
Whitehead/MRC_RH141198.18UniSTS
Whitehead_YAC14 UniSTS
D14Mit96  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814115,127,355 - 115,127,503UniSTSGRCm38
MGSCv3714115,526,577 - 115,526,725UniSTSGRCm37
Celera14113,717,935 - 113,718,083UniSTS
Cytogenetic Map14E4UniSTS
cM Map1454.0UniSTS
Whitehead Genetic1463.4UniSTS
Whitehead_YAC14 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC101744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02096285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF001463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ237840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT033762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT033786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000022707   ⟹   ENSMUSP00000022707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14115,330,058 - 116,761,849 (+)Ensembl
GRCm38.p6 Ensembl14115,092,626 - 116,524,437 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175665   ⟹   ENSMUSP00000135857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14115,329,704 - 115,655,233 (+)Ensembl
GRCm38.p6 Ensembl14115,092,272 - 115,417,821 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176912   ⟹   ENSMUSP00000135085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14115,329,682 - 116,762,591 (+)Ensembl
GRCm38.p6 Ensembl14115,092,250 - 116,525,179 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14115,329,647 - 115,371,622 (+)Ensembl
GRCm38.p6 Ensembl14115,092,215 - 115,134,210 (+)Ensembl
RefSeq Acc Id: NM_175500   ⟹   NP_780709
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,647 - 116,762,604 (+)NCBI
GRCm3814115,092,215 - 116,525,192 (+)NCBI
MGSCv3714115,491,437 - 116,924,414 (+)RGD
Celera14113,683,044 - 115,103,380 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518320   ⟹   XP_006518383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,640 - 116,066,280 (+)NCBI
GRCm3814115,092,201 - 115,828,874 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006518321   ⟹   XP_006518384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,640 - 116,074,487 (+)NCBI
GRCm3814115,092,201 - 115,837,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006518322   ⟹   XP_006518385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,640 - 115,657,064 (+)NCBI
GRCm3814115,092,201 - 115,419,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244875   ⟹   XP_011243177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,640 - 116,168,799 (+)NCBI
GRCm3814115,092,201 - 115,931,387 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244876   ⟹   XP_011243178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,640 - 116,762,602 (+)NCBI
GRCm3814115,092,201 - 116,524,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315745   ⟹   XP_017171234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,640 - 116,762,602 (+)NCBI
GRCm3814115,092,201 - 116,525,190 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158336   ⟹   XP_036014229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914115,329,640 - 116,066,280 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780709   ⟸   NM_175500
- Peptide Label: precursor
- UniProtKB: Q14BN1 (UniProtKB/Swiss-Prot),   Q8CAL5 (UniProtKB/Swiss-Prot),   H3BJQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518385   ⟸   XM_006518322
- Peptide Label: isoform X7
- UniProtKB: H3BLN8 (UniProtKB/TrEMBL),   Q8BNB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518384   ⟸   XM_006518321
- Peptide Label: isoform X5
- UniProtKB: H3BJQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518383   ⟸   XM_006518320
- Peptide Label: isoform X6
- UniProtKB: H3BJQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011243178   ⟸   XM_011244876
- Peptide Label: isoform X3
- UniProtKB: H3BJQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011243177   ⟸   XM_011244875
- Peptide Label: isoform X2
- UniProtKB: H3BJQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171234   ⟸   XM_017315745
- Peptide Label: isoform X4
- UniProtKB: H3BJQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000022707   ⟸   ENSMUST00000022707
RefSeq Acc Id: ENSMUSP00000135085   ⟸   ENSMUST00000176912
RefSeq Acc Id: ENSMUSP00000135857   ⟸   ENSMUST00000175665
RefSeq Acc Id: XP_036014229   ⟸   XM_036158336
- Peptide Label: isoform X1
- UniProtKB: H3BJQ8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CAL5-F1-model_v2 AlphaFold Q8CAL5 1-572 view protein structure

Promoters
RGD ID:8683180
Promoter ID:EPDNEW_M19620
Type:initiation region
Name:Gpc5_1
Description:Mus musculus glypican 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814115,092,272 - 115,092,332EPDNEW
RGD ID:6825046
Promoter ID:MM_KWN:17766
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Lung
Transcripts:NM_175500,   UC007UYH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3614115,491,344 - 115,491,844 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1194894 AgrOrtholog
Ensembl Genes ENSMUSG00000022112 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022707.7 UniProtKB/Swiss-Prot
  ENSMUST00000175665 ENTREZGENE
  ENSMUST00000175665.8 UniProtKB/TrEMBL
  ENSMUST00000176912 ENTREZGENE
  ENSMUST00000176912.8 UniProtKB/TrEMBL
InterPro Glypican UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glypican_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:103978 UniProtKB/Swiss-Prot
MGD MGI:1194894 ENTREZGENE
NCBI Gene 103978 ENTREZGENE
PANTHER PTHR10822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10822:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glypican UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpc5 PhenoGen
PROSITE GLYPICAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GPC5_MOUSE UniProtKB/Swiss-Prot
  H3BJQ8 ENTREZGENE, UniProtKB/TrEMBL
  H3BLN8 ENTREZGENE, UniProtKB/TrEMBL
  O70206_MOUSE UniProtKB/TrEMBL
  Q14BN1 ENTREZGENE
  Q8BNB0 ENTREZGENE, UniProtKB/TrEMBL
  Q8CAL5 ENTREZGENE
UniProt Secondary Q14BN1 UniProtKB/Swiss-Prot