Hgd (homogentisate 1, 2-dioxygenase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Hgd (homogentisate 1, 2-dioxygenase) Mus musculus
Analyze
Symbol: Hgd
Name: homogentisate 1, 2-dioxygenase
RGD ID: 1318714
MGI Page MGI
Description: Enables homogentisate 1,2-dioxygenase activity. Acts upstream of or within amino acid metabolic process. Is expressed in several structures, including alimentary system; brain; genitourinary system; liver; and sensory organ. Used to study alkaptonuria. Human ortholog(s) of this gene implicated in alkaptonuria. Orthologous to human HGD (homogentisate 1,2-dioxygenase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: aku; alkaptonuria; Hgo; homogentisate 1,2-dioxygenase; homogentisate oxygenase; homogentisic acid oxidase; homogentisicase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391637,400,104 - 37,452,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1637,400,515 - 37,452,382 (+)EnsemblGRCm39 Ensembl
GRCm381637,579,742 - 37,632,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1637,580,153 - 37,632,020 (+)EnsemblGRCm38mm10GRCm38
MGSCv371637,580,239 - 37,632,112 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361637,499,489 - 37,551,259 (+)NCBIMGSCv36mm8
Celera1637,988,030 - 38,039,914 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3-chloropropane-1,2-diol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-azacytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
amiodarone  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzbromarone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
ciguatoxin CTX1B  (EXP)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
dicrotophos  (ISO)
endosulfan  (ISO)
flutamide  (ISO)
furan  (ISO)
glafenine  (ISO)
GW 4064  (EXP)
inulin  (EXP)
isotretinoin  (ISO)
L-ethionine  (ISO)
lidocaine  (ISO)
lipopolysaccharide  (ISO)
methoxychlor  (ISO)
Monobutylphthalate  (ISO)
N-nitrosomorpholine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nitrofen  (ISO)
omeprazole  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (ISO)
potassium dichromate  (EXP)
progesterone  (ISO)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
tetrachloromethane  (EXP,ISO)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (EXP)
vancomycin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The molecular basis of alkaptonuria. Fernandez-Canon JM, etal., Nat Genet. 1996 Sep;14(1):19-24.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7705358   PMID:8188241   PMID:8188247   PMID:9069115   PMID:9154114   PMID:9892737   PMID:10083729   PMID:10094559   PMID:10349636   PMID:10518553   PMID:11042159   PMID:11076861  
PMID:12477932   PMID:14681479   PMID:14942747   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22496890   PMID:22863619   PMID:30928253   PMID:31600782  
PMID:38355793  


Genomics

Comparative Map Data
Hgd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391637,400,104 - 37,452,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1637,400,515 - 37,452,382 (+)EnsemblGRCm39 Ensembl
GRCm381637,579,742 - 37,632,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1637,580,153 - 37,632,020 (+)EnsemblGRCm38mm10GRCm38
MGSCv371637,580,239 - 37,632,112 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361637,499,489 - 37,551,259 (+)NCBIMGSCv36mm8
Celera1637,988,030 - 38,039,914 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.4NCBI
HGD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383120,628,172 - 120,682,239 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3120,628,172 - 120,682,269 (-)EnsemblGRCh38hg38GRCh38
GRCh373120,347,019 - 120,401,086 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363121,829,705 - 121,884,018 (-)NCBINCBI36Build 36hg18NCBI36
Celera3118,756,410 - 118,810,810 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3117,720,226 - 117,775,229 (-)NCBIHuRef
CHM1_13120,310,676 - 120,365,085 (-)NCBICHM1_1
T2T-CHM13v2.03123,348,044 - 123,402,117 (-)NCBIT2T-CHM13v2.0
Hgd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81176,592,202 - 76,643,776 (-)NCBIGRCr8
mRatBN7.21163,086,750 - 63,138,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,086,752 - 63,138,323 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,899,210 - 71,950,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01164,561,435 - 64,613,001 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,611,104 - 63,662,387 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01165,983,221 - 66,034,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1165,983,221 - 66,034,573 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,075,116 - 69,126,725 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,876,269 - 64,928,243 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,933,859 - 64,985,832 (-)NCBI
Celera1162,583,352 - 62,634,571 (-)NCBICelera
Cytogenetic Map11q21NCBI
Hgd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542720,137,861 - 20,188,700 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542720,141,522 - 20,188,700 (-)NCBIChiLan1.0ChiLan1.0
HGD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22118,590,548 - 118,644,540 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13118,595,326 - 118,649,318 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03117,735,772 - 117,790,096 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13124,646,431 - 124,700,733 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3124,646,431 - 124,700,733 (-)Ensemblpanpan1.1panPan2
HGD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13324,066,099 - 24,107,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3324,066,306 - 24,151,354 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3324,095,501 - 24,137,233 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03324,305,826 - 24,347,869 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3324,306,037 - 24,391,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13324,106,833 - 24,148,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03324,146,893 - 24,188,831 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03324,711,359 - 24,753,085 (-)NCBIUU_Cfam_GSD_1.0
Hgd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602130,162,151 - 130,207,463 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365367,314,754 - 7,352,222 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365367,314,548 - 7,359,426 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HGD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13139,660,343 - 139,710,404 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113139,660,315 - 139,710,402 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HGD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12260,136,293 - 60,192,275 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2260,137,532 - 60,192,430 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041106,112,902 - 106,170,562 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hgd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473127,548,922 - 27,604,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473127,549,245 - 27,604,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hgd
1361 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:705
Count of miRNA genes:417
Interacting mature miRNAs:472
Transcripts:ENSMUST00000159787, ENSMUST00000159938, ENSMUST00000160847, ENSMUST00000161193, ENSMUST00000162918
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
10412263Gvhd6_mgraft-versus host disease 6 (mouse)Not determined163606085745511148Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse

Markers in Region
AU021884  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,600,914 - 37,601,126UniSTSGRCm38
MGSCv371637,601,000 - 37,601,212UniSTSGRCm37
Celera1638,008,806 - 38,009,018UniSTS
Cytogenetic Map16B3UniSTS
cM Map1627.3UniSTS
Whitehead/MRC_RH16362.81UniSTS
RH124262  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,596,269 - 37,596,356UniSTSGRCm38
GRCm385124,462,004 - 124,462,091UniSTSGRCm38
MGSCv371637,596,355 - 37,596,442UniSTSGRCm37
MGSCv375124,912,013 - 124,912,100UniSTSGRCm37
Celera5121,535,433 - 121,535,521UniSTS
Celera1638,004,146 - 38,004,233UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5FUniSTS
cM Map1627.3UniSTS
Hgd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
cM Map1627.3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000159787   ⟹   ENSMUSP00000156254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1637,400,612 - 37,452,382 (+)Ensembl
GRCm38.p6 Ensembl1637,580,250 - 37,632,020 (+)Ensembl
Ensembl Acc Id: ENSMUST00000159938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1637,442,211 - 37,452,382 (+)Ensembl
GRCm38.p6 Ensembl1637,621,849 - 37,632,020 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160847   ⟹   ENSMUSP00000125492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1637,400,515 - 37,452,382 (+)Ensembl
GRCm38.p6 Ensembl1637,580,153 - 37,632,020 (+)Ensembl
Ensembl Acc Id: ENSMUST00000161193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1637,400,616 - 37,432,422 (+)Ensembl
GRCm38.p6 Ensembl1637,580,254 - 37,612,060 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1637,400,644 - 37,436,617 (+)Ensembl
GRCm38.p6 Ensembl1637,580,282 - 37,616,255 (+)Ensembl
RefSeq Acc Id: NM_013547   ⟹   NP_038575
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391637,400,515 - 37,452,388 (+)NCBI
GRCm381637,580,153 - 37,632,026 (+)ENTREZGENE
MGSCv371637,580,239 - 37,632,112 (+)RGD
Celera1637,988,030 - 38,039,914 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027778
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391637,400,515 - 37,452,388 (+)NCBI
GRCm381637,580,153 - 37,632,026 (+)ENTREZGENE
MGSCv371637,580,239 - 37,632,112 (+)RGD
Celera1637,988,030 - 38,039,914 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030248978   ⟹   XP_030104838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391637,400,104 - 37,452,388 (+)NCBI
GRCm381637,579,742 - 37,632,026 (+)NCBI
Sequence:
RefSeq Acc Id: NP_038575   ⟸   NM_013547
- UniProtKB: Q7TPP2 (UniProtKB/Swiss-Prot),   O09173 (UniProtKB/Swiss-Prot),   Q8CI38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104838   ⟸   XM_030248978
- Peptide Label: isoform X1
- UniProtKB: O09173 (UniProtKB/Swiss-Prot),   Q7TPP2 (UniProtKB/Swiss-Prot),   Q8CI38 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000156254   ⟸   ENSMUST00000159787
Ensembl Acc Id: ENSMUSP00000125492   ⟸   ENSMUST00000160847
Protein Domains
Homogentisate 1,2-dioxygenase C-terminal   Homogentisate 1,2-dioxygenase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O09173-F1-model_v2 AlphaFold O09173 1-445 view protein structure

Promoters
RGD ID:6827122
Promoter ID:MM_KWN:20946
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:NM_013547,   NR_027778,   UC007ZEF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361637,580,066 - 37,580,566 (+)MPROMDB
RGD ID:8686162
Promoter ID:EPDNEW_M21112
Type:initiation region
Name:Hgd_2
Description:Mus musculus homogentisate 1, 2-dioxygenase , transcript variant2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21113  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381637,580,146 - 37,580,206EPDNEW
RGD ID:8686164
Promoter ID:EPDNEW_M21113
Type:initiation region
Name:Hgd_1
Description:Mus musculus homogentisate 1, 2-dioxygenase , transcript variant2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21112  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381637,580,282 - 37,580,342EPDNEW
RGD ID:6827123
Promoter ID:MM_KWN:20947
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000023519
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361637,588,411 - 37,588,911 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96078 AgrOrtholog
Ensembl Genes ENSMUSG00000022821 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000159787 ENTREZGENE
  ENSMUST00000159787.8 UniProtKB/TrEMBL
  ENSMUST00000160847 ENTREZGENE
  ENSMUST00000160847.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HgmA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HgmA_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homogentis_dOase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC_Cupin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15233 UniProtKB/Swiss-Prot
MGD MGI:96078 ENTREZGENE
NCBI Gene 15233 ENTREZGENE
PANTHER HOMOGENTISATE 1,2-DIOXYGENASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11056 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HgmA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HgmA_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hgd PhenoGen
Superfamily-SCOP SSF51182 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt HGD_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q05BJ1_MOUSE UniProtKB/TrEMBL
  Q7TPP2 ENTREZGENE
  Q8CI38 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q7TPP2 UniProtKB/Swiss-Prot