Rmdn3 (regulator of microtubule dynamics 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rmdn3 (regulator of microtubule dynamics 3) Mus musculus
Analyze
Symbol: Rmdn3
Name: regulator of microtubule dynamics 3
RGD ID: 1318620
MGI Page MGI
Description: Predicted to enable microtubule binding activity. Predicted to be involved in intracellular calcium ion homeostasis. Predicted to act upstream of or within apoptotic process and cell differentiation. Located in mitochondrion. Is expressed in several structures, including eye. Orthologous to human RMDN3 (regulator of microtubule dynamics 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200015F23Rik; AI131757; Fam82; Fam82a2; family with sequence similarity 82, member A2; microtubule-associated protein; mRMD-3; protein tyrosine phosphatase-interacting protein 51; PTPIP51; regulator of microtubule dynamics protein 3; RMD-3; Rmd3; RP23-15I21.5; tyrosine phosphatase interacting protein 51
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,967,479 - 118,987,515 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,967,482 - 118,987,515 (-)EnsemblGRCm39 Ensembl
GRCm382119,136,998 - 119,157,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,137,001 - 119,157,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv372118,962,734 - 118,982,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,828,442 - 118,848,396 (-)NCBIMGSCv36mm8
Celera2120,287,522 - 120,307,997 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18070910   PMID:18084773  
PMID:18614015   PMID:18614564   PMID:18799693   PMID:19372376   PMID:19844996   PMID:20360068   PMID:21266951   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23533724   PMID:25496818  
PMID:26496610   PMID:28345618   PMID:31501572   PMID:32325033   PMID:32554809  


Genomics

Comparative Map Data
Rmdn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,967,479 - 118,987,515 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,967,482 - 118,987,515 (-)EnsemblGRCm39 Ensembl
GRCm382119,136,998 - 119,157,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,137,001 - 119,157,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv372118,962,734 - 118,982,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,828,442 - 118,848,396 (-)NCBIMGSCv36mm8
Celera2120,287,522 - 120,307,997 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.94NCBI
RMDN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,735,887 - 40,755,254 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,735,884 - 40,755,851 (-)EnsemblGRCh38hg38GRCh38
GRCh371541,028,085 - 41,047,452 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,815,378 - 38,834,750 (-)NCBINCBI36Build 36hg18NCBI36
Celera1517,795,976 - 17,815,353 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,876,217 - 17,895,600 (-)NCBIHuRef
CHM1_11541,148,086 - 41,167,485 (-)NCBICHM1_1
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBIT2T-CHM13v2.0
Rmdn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,579,811 - 126,601,016 (-)NCBIGRCr8
mRatBN7.23106,125,961 - 106,146,568 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,125,951 - 106,146,586 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,799,110 - 109,819,731 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,394,646 - 118,415,267 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,055,031 - 116,075,652 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,943,843 - 110,964,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,943,826 - 110,964,452 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,494,481 - 117,515,087 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,651,318 - 105,671,841 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,547,751 - 105,568,231 (-)NCBI
Celera3105,039,297 - 105,059,604 (-)NCBICelera
Cytogenetic Map3q35NCBI
Rmdn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,591,049 - 7,610,147 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,591,049 - 7,610,164 (-)NCBIChiLan1.0ChiLan1.0
RMDN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,976,840 - 29,996,369 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,128,288 - 34,147,804 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,676,789 - 19,696,297 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,928,987 - 37,948,407 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,929,628 - 37,947,856 (-)Ensemblpanpan1.1panPan2
RMDN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,878,525 - 7,895,457 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,851,605 - 7,896,873 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,932,525 - 7,949,439 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,005,436 - 8,022,398 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,996,329 - 8,022,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,928,954 - 7,945,875 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,035,981 - 8,053,148 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,165,022 - 8,181,946 (-)NCBIUU_Cfam_GSD_1.0
Rmdn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,291,900 - 86,310,485 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,139,583 - 4,158,491 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,139,963 - 4,158,519 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RMDN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,574,237 - 130,615,722 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,574,283 - 130,591,580 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,732,695 - 145,749,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RMDN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,243,832 - 42,282,811 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,256,613 - 42,278,771 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,699,200 - 98,737,589 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rmdn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,983,449 - 8,005,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,983,452 - 8,005,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rmdn3
616 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1264
Count of miRNA genes:524
Interacting mature miRNAs:611
Transcripts:ENSMUST00000094695, ENSMUST00000127965, ENSMUST00000129351, ENSMUST00000130249, ENSMUST00000135419, ENSMUST00000139519, ENSMUST00000156332
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112024987128173821Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112024987128173821Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115430481124741920Mouse
1558825Aabpr_maberrant activation of B cell proliferation (mouse)Not determined2116033229122207534Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118356772125048872Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse

Markers in Region
AI131757  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382119,137,219 - 119,137,414UniSTSGRCm38
MGSCv372118,962,955 - 118,963,150UniSTSGRCm37
Cytogenetic Map2E5UniSTS
Whitehead/MRC_RH21525.01UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_374514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK004786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BR000695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY453591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000094695   ⟹   ENSMUSP00000092283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2118,967,482 - 118,987,515 (-)Ensembl
GRCm38.p6 Ensembl2119,137,001 - 119,157,034 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2118,969,537 - 118,971,356 (-)Ensembl
GRCm38.p6 Ensembl2119,139,056 - 119,140,875 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129351   ⟹   ENSMUSP00000119498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2118,984,535 - 118,987,429 (-)Ensembl
GRCm38.p6 Ensembl2119,154,054 - 119,156,948 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2118,976,636 - 118,977,926 (-)Ensembl
GRCm38.p6 Ensembl2119,146,155 - 119,147,445 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135419   ⟹   ENSMUSP00000123373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2118,984,505 - 118,987,305 (-)Ensembl
GRCm38.p6 Ensembl2119,154,024 - 119,156,824 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139519   ⟹   ENSMUSP00000115973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2118,984,545 - 118,987,445 (-)Ensembl
GRCm38.p6 Ensembl2119,154,064 - 119,156,964 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2118,972,899 - 118,977,917 (-)Ensembl
GRCm38.p6 Ensembl2119,142,418 - 119,147,436 (-)Ensembl
RefSeq Acc Id: NM_001033136   ⟹   NP_001028308
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392118,967,479 - 118,987,515 (-)NCBI
GRCm382119,136,998 - 119,157,034 (-)ENTREZGENE
MGSCv372118,962,734 - 118,982,770 (-)RGD
Celera2120,287,522 - 120,307,997 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004940711
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392118,967,481 - 118,987,509 (-)NCBI
Sequence:
RefSeq Acc Id: XR_374514
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392118,967,481 - 118,987,509 (-)NCBI
GRCm382119,137,000 - 119,157,028 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001028308   ⟸   NM_001033136
- UniProtKB: Q6P8M2 (UniProtKB/Swiss-Prot),   Q3UB61 (UniProtKB/Swiss-Prot),   Q3U5Y8 (UniProtKB/Swiss-Prot),   A9UN03 (UniProtKB/Swiss-Prot),   Q7TNF2 (UniProtKB/Swiss-Prot),   Q3UJU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000115973   ⟸   ENSMUST00000139519
RefSeq Acc Id: ENSMUSP00000123373   ⟸   ENSMUST00000135419
RefSeq Acc Id: ENSMUSP00000119498   ⟸   ENSMUST00000129351
RefSeq Acc Id: ENSMUSP00000092283   ⟸   ENSMUST00000094695

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UJU9-F1-model_v2 AlphaFold Q3UJU9 1-470 view protein structure

Promoters
RGD ID:6831353
Promoter ID:MM_KWN:31215
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000037441
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362118,966,711 - 118,967,312 (-)MPROMDB
RGD ID:6831352
Promoter ID:MM_KWN:31216
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain
Transcripts:OTTMUST00000037439,   OTTMUST00000037440
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362118,973,141 - 118,973,762 (-)MPROMDB
RGD ID:6849107
Promoter ID:MM_XEF:4135
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:NM_001129926
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362118,979,361 - 118,979,861 (-)MPROMDB
RGD ID:6831354
Promoter ID:MM_KWN:31217
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000037435,   OTTMUST00000037436,   OTTMUST00000037437,   OTTMUST00000037438
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362118,982,471 - 118,982,971 (-)MPROMDB
RGD ID:6878328
Promoter ID:EPDNEW_M2615
Type:multiple initiation site
Name:Rmdn3_1
Description:Mus musculus regulator of microtubule dynamics 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382119,156,959 - 119,157,019EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915059 AgrOrtholog
Ensembl Genes ENSMUSG00000042135
  ENSMUSG00000070730 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094695 ENTREZGENE
  ENSMUST00000094695.12 UniProtKB/Swiss-Prot
  ENSMUST00000129351.2 UniProtKB/TrEMBL
  ENSMUST00000135419.8 UniProtKB/TrEMBL
  ENSMUST00000139519.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
InterPro RMD1-3_a_helical_rpt UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:67809 UniProtKB/Swiss-Prot
MGD MGI:1915059 ENTREZGENE
NCBI Gene 67809 ENTREZGENE
PANTHER REGULATOR OF MICROTUBULE DYNAMICS PROTEIN UniProtKB/Swiss-Prot
  REGULATOR OF MICROTUBULE DYNAMICS PROTEIN 3 UniProtKB/Swiss-Prot
Pfam RMD1-3 UniProtKB/Swiss-Prot
PhenoGen Rmdn3 PhenoGen
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot
UniProt A3KGH5_MOUSE UniProtKB/TrEMBL
  A3KGH6_MOUSE UniProtKB/TrEMBL
  A3KGH7_MOUSE UniProtKB/TrEMBL
  A9UN03 ENTREZGENE
  Q3U5Y8 ENTREZGENE
  Q3UB61 ENTREZGENE
  Q3UJU9 ENTREZGENE
  Q6P8M2 ENTREZGENE
  Q7TNF2 ENTREZGENE
  RMD3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A9UN03 UniProtKB/Swiss-Prot
  Q3U5Y8 UniProtKB/Swiss-Prot
  Q3UB61 UniProtKB/Swiss-Prot
  Q6P8M2 UniProtKB/Swiss-Prot
  Q7TNF2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-12 Rmdn3  regulator of microtubule dynamics 3  Fam82a2  family with sequence similarity 82, member A2  Symbol and/or name change 5135510 APPROVED