Ptp4a3 (protein tyrosine phosphatase 4a3) - Rat Genome Database

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Gene: Ptp4a3 (protein tyrosine phosphatase 4a3) Mus musculus
Analyze
Symbol: Ptp4a3
Name: protein tyrosine phosphatase 4a3
RGD ID: 1318605
MGI Page MGI
Description: Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within several processes, including cellular response to leukemia inhibitory factor; positive regulation of vascular permeability; and regulation of vascular endothelial growth factor signaling pathway. Predicted to be located in endosome and plasma membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; liver; metanephros; and retina layer. Orthologous to human PTP4A3 (protein tyrosine phosphatase 4A3).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AV088979; pPtp4a3; Pr; Prl-3; protein tyrosine phosphatase type IVA 3; protein-tyrosine phosphatase 4a3; protein-tyrosine phosphatase of regenerating liver 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391573,594,994 - 73,630,615 (+)NCBIGRCm39mm39
GRCm39 Ensembl1573,594,994 - 73,630,615 (+)Ensembl
GRCm381573,723,145 - 73,758,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1573,723,145 - 73,758,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv371573,553,575 - 73,589,196 (+)NCBIGRCm37mm9NCBIm37
MGSCv361573,575,667 - 73,586,021 (+)NCBImm8
Celera1575,228,105 - 75,263,862 (+)NCBICelera
Cytogenetic Map15D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:9514946   PMID:10349636   PMID:10725249   PMID:10747914   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12782572   PMID:14610273   PMID:15161639   PMID:15226823  
PMID:15326366   PMID:15489334   PMID:15673457   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16875667   PMID:17018620   PMID:17592549   PMID:17967808   PMID:18471976   PMID:18799693  
PMID:20375622   PMID:20439489   PMID:21267068   PMID:21873635   PMID:22028901   PMID:23117660   PMID:23554722   PMID:23555575   PMID:24403062   PMID:24909283   PMID:24950307   PMID:25139404  
PMID:27124574   PMID:29746167   PMID:32571875   PMID:32918875  


Genomics

Comparative Map Data
Ptp4a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391573,594,994 - 73,630,615 (+)NCBIGRCm39mm39
GRCm39 Ensembl1573,594,994 - 73,630,615 (+)Ensembl
GRCm381573,723,145 - 73,758,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1573,723,145 - 73,758,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv371573,553,575 - 73,589,196 (+)NCBIGRCm37mm9NCBIm37
MGSCv361573,575,667 - 73,586,021 (+)NCBImm8
Celera1575,228,105 - 75,263,862 (+)NCBICelera
Cytogenetic Map15D3NCBI
PTP4A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8141,391,995 - 141,432,454 (+)EnsemblGRCh38hg38GRCh38
GRCh388141,391,995 - 141,432,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh378142,402,121 - 142,442,554 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368142,501,189 - 142,510,802 (+)NCBINCBI36hg18NCBI36
Build 348142,501,188 - 142,510,802NCBI
Celera8138,607,734 - 138,608,044 (+)NCBI
Cytogenetic Map8q24.3NCBI
HuRef8137,748,484 - 137,759,930 (+)NCBIHuRef
CHM1_18142,471,719 - 142,482,782 (+)NCBICHM1_1
Ptp4a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27105,650,640 - 105,660,921 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7105,628,029 - 105,660,919 (+)Ensembl
Rnor_6.07114,969,699 - 115,002,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7114,997,103 - 115,002,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07114,892,674 - 114,924,154 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47111,462,191 - 111,468,045 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17111,467,866 - 111,502,275 (+)NCBI
Celera7102,062,262 - 102,068,065 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ptp4a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955454429,792 - 441,268 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955454429,051 - 440,328 (+)NCBIChiLan1.0ChiLan1.0
PTP4A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18141,166,898 - 141,187,383 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8141,166,898 - 141,188,314 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08138,062,418 - 138,108,281 (+)NCBIMhudiblu_PPA_v0panPan3
PTP4A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11335,875,467 - 35,886,330 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1335,880,005 - 35,886,324 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1335,734,643 - 35,745,436 (+)NCBI
ROS_Cfam_1.01336,261,162 - 36,271,948 (+)NCBI
ROS_Cfam_1.0 Ensembl1336,262,778 - 36,273,628 (+)Ensembl
UMICH_Zoey_3.11335,981,264 - 35,992,052 (+)NCBI
UNSW_CanFamBas_1.01336,071,127 - 36,081,934 (+)NCBI
UU_Cfam_GSD_1.01336,491,590 - 36,502,389 (+)NCBI
Ptp4a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053032,616,806 - 2,626,450 (-)NCBI
SpeTri2.0NW_00493647010,042,903 - 10,052,475 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTP4A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl42,345,118 - 2,364,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.142,345,119 - 2,376,765 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PTP4A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18135,663,128 - 135,672,523 (+)NCBIChlSab1.1chlSab2
ChlSab1.18135,663,128 - 135,672,523 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl8135,663,149 - 135,671,300 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660394,456,641 - 4,500,393 (-)NCBIVero_WHO_p1.0
Ptp4a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473514,964,403 - 14,977,441 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AU016354  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381573,757,095 - 73,757,205UniSTSGRCm38
MGSCv371573,587,525 - 73,587,635UniSTSGRCm37
Celera1575,262,188 - 75,262,298UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15618.46UniSTS
AV088979  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381573,757,095 - 73,757,187UniSTSGRCm38
MGSCv371573,587,525 - 73,587,617UniSTSGRCm37
Celera1575,262,188 - 75,262,280UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15613.6UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined346021278717086Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined346021278717086Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined346021278717086Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15346021278717086Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15346021278717086Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15610000076000000Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15610000076500000Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15610000078800000Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15690000076000000Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15690000076000000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927293679590561Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930000076200000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800000086800000Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154230000095600000Mouse
1300644Fob3_mF-line obesity QTL 3 (mouse)11.3Not determined154414443889377036Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154468146478681588Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154498729278987432Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154651779780517996Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154651779780517996Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154743448581434630Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154753774781537842Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154850000098500000Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154859351382593647Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155114129876910293Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155128885985288984Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155154651285546662Mouse
10412067Pain2_mpain 2 (mouse)Not determined155177349085773777Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155181398385822600Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155193466685934802Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155370000089700000Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155491728088917280Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155690000087800000Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155724515691245304Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155724515691245304Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156170000095700000Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156327970297279794Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156351779781202235Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156492762598927745Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156545237799456827Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156564117599641298Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
25671381Hrsq3_mhost response to SARS QTL 3, eosinophilia (mouse)157227269075972984Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
1300844Emo2_memotionality 2 (mouse)Not determined157250061076910293Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157250061080014977Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir495mmu-miR-495-3pOncomiRDBexternal_infoNANA22469786

Predicted Target Of
Summary Value
Count of predictions:2592
Count of miRNA genes:457
Interacting mature miRNAs:515
Transcripts:ENSMUST00000053232, ENSMUST00000163582, ENSMUST00000165541, ENSMUST00000167582
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA538895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ123367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK620602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK621052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000053232   ⟹   ENSMUSP00000060956
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,620,223 - 73,630,615 (+)Ensembl
GRCm38.p6 Ensembl1573,748,374 - 73,758,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163582   ⟹   ENSMUSP00000131281
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,596,779 - 73,629,077 (+)Ensembl
GRCm38.p6 Ensembl1573,724,930 - 73,757,228 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165541   ⟹   ENSMUSP00000132097
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,594,994 - 73,630,615 (+)Ensembl
GRCm38.p6 Ensembl1573,723,145 - 73,758,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167582   ⟹   ENSMUSP00000131036
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,594,994 - 73,630,615 (+)Ensembl
GRCm38.p6 Ensembl1573,723,145 - 73,758,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,619,875 - 73,629,075 (+)Ensembl
GRCm38.p6 Ensembl1573,748,026 - 73,757,226 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230044   ⟹   ENSMUSP00000155312
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,595,019 - 73,623,876 (+)Ensembl
GRCm38.p6 Ensembl1573,723,170 - 73,752,027 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230177   ⟹   ENSMUSP00000154829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,596,647 - 73,629,076 (+)Ensembl
GRCm38.p6 Ensembl1573,724,798 - 73,757,227 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230307   ⟹   ENSMUSP00000155324
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,619,483 - 73,623,876 (+)Ensembl
GRCm38.p6 Ensembl1573,747,634 - 73,752,027 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230864
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,594,994 - 73,627,920 (+)Ensembl
GRCm38.p6 Ensembl1573,723,145 - 73,756,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231209   ⟹   ENSMUSP00000155773
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,619,567 - 73,623,876 (+)Ensembl
GRCm38.p6 Ensembl1573,747,718 - 73,752,027 (+)Ensembl
RefSeq Acc Id: NM_001166388   ⟹   NP_001159860
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,596,779 - 73,630,615 (+)NCBI
GRCm381573,724,930 - 73,758,766 (+)NCBI
MGSCv371573,553,575 - 73,589,196 (+)RGD
Celera1575,228,105 - 75,263,862 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166389   ⟹   NP_001159861
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,594,994 - 73,630,615 (+)NCBI
GRCm381573,723,145 - 73,758,766 (+)ENTREZGENE
MGSCv371573,553,575 - 73,589,196 (+)RGD
Celera1575,228,105 - 75,263,862 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166390   ⟹   NP_001159862
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,594,994 - 73,630,615 (+)NCBI
GRCm381573,723,145 - 73,758,766 (+)ENTREZGENE
MGSCv371573,553,575 - 73,589,196 (+)RGD
Celera1575,228,105 - 75,263,862 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357591   ⟹   NP_001344520
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,596,646 - 73,630,615 (+)NCBI
GRCm381573,724,797 - 73,758,766 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008975   ⟹   NP_033001
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,619,875 - 73,630,615 (+)NCBI
GRCm381573,748,026 - 73,758,766 (+)NCBI
MGSCv371573,553,575 - 73,589,196 (+)RGD
Celera1575,228,105 - 75,263,862 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520642   ⟹   XP_006520705
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,619,325 - 73,629,077 (+)NCBI
GRCm381573,747,476 - 73,757,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245523   ⟹   XP_011243825
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,619,880 - 73,629,077 (+)NCBI
GRCm381573,748,031 - 73,757,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248427   ⟹   XP_030104287
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,602,008 - 73,629,077 (+)NCBI
GRCm381573,730,202 - 73,757,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159272   ⟹   XP_036015165
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,621,698 - 73,629,077 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033001   ⟸   NM_008975
- Peptide Label: isoform 1
- UniProtKB: Q9D658 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159861   ⟸   NM_001166389
- Peptide Label: isoform 1
- UniProtKB: Q9D658 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159862   ⟸   NM_001166390
- Peptide Label: isoform 2
- UniProtKB: Q9D658 (UniProtKB/Swiss-Prot),   E9PXS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001159860   ⟸   NM_001166388
- Peptide Label: isoform 1
- UniProtKB: Q9D658 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520705   ⟸   XM_006520642
- Peptide Label: isoform X1
- UniProtKB: Q9D658 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011243825   ⟸   XM_011245523
- Peptide Label: isoform X1
- UniProtKB: Q9D658 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344520   ⟸   NM_001357591
- Peptide Label: isoform 1
RefSeq Acc Id: XP_030104287   ⟸   XM_030248427
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000131281   ⟸   ENSMUST00000163582
RefSeq Acc Id: ENSMUSP00000155773   ⟸   ENSMUST00000231209
RefSeq Acc Id: ENSMUSP00000060956   ⟸   ENSMUST00000053232
RefSeq Acc Id: ENSMUSP00000155324   ⟸   ENSMUST00000230307
RefSeq Acc Id: ENSMUSP00000155312   ⟸   ENSMUST00000230044
RefSeq Acc Id: ENSMUSP00000154829   ⟸   ENSMUST00000230177
RefSeq Acc Id: ENSMUSP00000132097   ⟸   ENSMUST00000165541
RefSeq Acc Id: ENSMUSP00000131036   ⟸   ENSMUST00000167582
RefSeq Acc Id: XP_036015165   ⟸   XM_036159272
- Peptide Label: isoform X1
Promoters
RGD ID:6826393
Promoter ID:MM_KWN:18727
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Lung,   Spleen
Transcripts:NM_008975,   NM_008975_PTP4A3
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361573,578,404 - 73,578,904 (+)MPROMDB
RGD ID:8683926
Promoter ID:EPDNEW_M19994
Type:initiation region
Name:Ptp4a3_2
Description:Mus musculus protein tyrosine phosphatase 4a3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19995  EPDNEW_M19996  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381573,724,792 - 73,724,852EPDNEW
RGD ID:8683928
Promoter ID:EPDNEW_M19995
Type:initiation region
Name:Ptp4a3_3
Description:Mus musculus protein tyrosine phosphatase 4a3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19994  EPDNEW_M19996  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381573,748,054 - 73,748,114EPDNEW
RGD ID:8683930
Promoter ID:EPDNEW_M19996
Type:multiple initiation site
Name:Ptp4a3_1
Description:Mus musculus protein tyrosine phosphatase 4a3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19994  EPDNEW_M19995  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381573,748,373 - 73,748,433EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277098 AgrOrtholog
Ensembl Genes ENSMUSG00000059895 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000060956 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000131036 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000131281 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000132097 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000154829 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000155312 UniProtKB/TrEMBL
  ENSMUSP00000155324 UniProtKB/TrEMBL
  ENSMUSP00000155773 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053232 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000163582 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000165541 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000167582 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000230044 UniProtKB/TrEMBL
  ENSMUST00000230177 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000230307 UniProtKB/TrEMBL
  ENSMUST00000231209 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19245 UniProtKB/Swiss-Prot
MGD MGI:1277098 ENTREZGENE
NCBI Gene 19245 ENTREZGENE
Pfam DSPc UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/Swiss-Prot
PhenoGen Ptp4a3 PhenoGen
PROSITE TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VHQ8_MOUSE UniProtKB/TrEMBL
  E9PXS4 ENTREZGENE, UniProtKB/TrEMBL
  Q4FK37_MOUSE UniProtKB/TrEMBL
  Q9D658 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O70275 UniProtKB/Swiss-Prot
  Q3T9Z5 UniProtKB/Swiss-Prot
  Q9CTC8 UniProtKB/Swiss-Prot