Wars2 (tryptophanyl tRNA synthetase 2 (mitochondrial)) - Rat Genome Database

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Gene: Wars2 (tryptophanyl tRNA synthetase 2 (mitochondrial)) Mus musculus
Analyze
Symbol: Wars2
Name: tryptophanyl tRNA synthetase 2 (mitochondrial)
RGD ID: 1318472
MGI Page MGI
Description: Predicted to enable tryptophan-tRNA ligase activity. Acts upstream of or within vasculogenesis. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; ear; genitourinary system; and skeleton. Orthologous to human WARS2 (tryptophanyl tRNA synthetase 2, mitochondrial).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: (Mt)TrpRS; 5730427B17Rik; 9430020O07Rik; AI413375; T; TrpRS; tryptophan--tRNA ligase; tryptophan--tRNA ligase, mitochondrial; tryptophanyl-tRNA synthetase, mitochondrial
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39399,047,423 - 99,128,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl399,048,384 - 99,146,502 (+)EnsemblGRCm39 Ensembl
GRCm38399,140,107 - 99,221,230 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl399,141,068 - 99,239,186 (+)EnsemblGRCm38mm10GRCm38
MGSCv37398,945,013 - 99,024,126 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36399,270,151 - 99,349,264 (+)NCBIMGSCv36mm8
MGSCv36399,350,466 - 99,429,579 (+)NCBIMGSCv36mm8
Cytogenetic Map3F2.2NCBI
cM Map343.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrial matrix  (IBA,ISO)
mitochondrion  (HDA,IBA,ISO)
nucleoplasm  (ISO)
plasma membrane  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
tryptophan metabolic pathway  (IEA,ISO)

External Pathway Database Links

KEGG Pathway Tryptophan metabolism

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14651853   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16639024   PMID:18614015  
PMID:19941862   PMID:21873635   PMID:24194600   PMID:27534441   PMID:27626380   PMID:30566859   PMID:32968282   PMID:36091365  


Genomics

Comparative Map Data
Wars2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39399,047,423 - 99,128,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl399,048,384 - 99,146,502 (+)EnsemblGRCm39 Ensembl
GRCm38399,140,107 - 99,221,230 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl399,141,068 - 99,239,186 (+)EnsemblGRCm38mm10GRCm38
MGSCv37398,945,013 - 99,024,126 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36399,270,151 - 99,349,264 (+)NCBIMGSCv36mm8
MGSCv36399,350,466 - 99,429,579 (+)NCBIMGSCv36mm8
Cytogenetic Map3F2.2NCBI
cM Map343.03NCBI
WARS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,031,216 - 119,140,672 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,031,216 - 119,140,654 (-)EnsemblGRCh38hg38GRCh38
GRCh371119,573,839 - 119,683,295 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361119,375,362 - 119,484,818 (-)NCBINCBI36Build 36hg18NCBI36
Build 341119,285,882 - 119,395,329NCBI
Celera1117,804,670 - 117,914,139 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1117,432,899 - 117,542,355 (-)NCBIHuRef
CHM1_11119,689,114 - 119,798,567 (-)NCBICHM1_1
T2T-CHM13v2.01119,044,400 - 119,154,015 (-)NCBIT2T-CHM13v2.0
Wars2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82189,150,322 - 189,233,606 (+)NCBIGRCr8
mRatBN7.22186,459,744 - 186,543,581 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2186,459,444 - 186,543,571 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2194,125,237 - 194,209,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02191,938,946 - 192,023,252 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02186,757,892 - 186,841,864 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02201,170,363 - 201,256,115 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2201,172,312 - 201,255,703 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02220,638,872 - 220,721,873 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42193,819,862 - 193,902,421 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2178,941,140 - 179,020,771 (+)NCBICelera
Cytogenetic Map2q34NCBI
Wars2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543522,032,230 - 22,115,138 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543522,032,230 - 22,115,138 (-)NCBIChiLan1.0ChiLan1.0
WARS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,654,951 - 111,765,149 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11111,257,544 - 111,369,015 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0183,405,595 - 83,515,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11118,402,385 - 118,511,699 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1118,402,385 - 118,516,099 (+)Ensemblpanpan1.1panPan2
WARS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11756,229,175 - 56,322,688 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1756,229,769 - 56,322,638 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1755,877,127 - 55,971,652 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01757,100,900 - 57,195,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1757,100,941 - 57,195,693 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11756,136,854 - 56,231,602 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01756,169,008 - 56,263,812 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01756,758,810 - 56,853,584 (-)NCBIUU_Cfam_GSD_1.0
Wars2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505810,526,304 - 10,598,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366273,890,629 - 3,962,899 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366273,890,629 - 3,963,169 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WARS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4101,787,583 - 101,883,070 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14101,787,585 - 101,881,231 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24111,920,791 - 111,924,709 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WARS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12014,614,902 - 14,726,630 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2014,615,349 - 14,726,780 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603817,270,507 - 17,393,968 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wars2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477214,654,403 - 14,735,315 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477214,652,874 - 14,735,732 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wars2
2819 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1405
Count of miRNA genes:740
Interacting mature miRNAs:910
Transcripts:ENSMUST00000004343, ENSMUST00000126875, ENSMUST00000135960, ENSMUST00000145650
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1301277nctm1_mNakano cataract modifier 1 (mouse)Not determined397698638100373060Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse

Markers in Region
AI413375  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38399,218,217 - 99,218,302UniSTSGRCm38
MGSCv37399,022,140 - 99,022,225UniSTSGRCm37
Cytogenetic Map3F3UniSTS
Whitehead/MRC_RH31140.45UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001418997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC080018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000004343   ⟹   ENSMUSP00000004343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl399,048,384 - 99,127,519 (+)Ensembl
GRCm38.p6 Ensembl399,141,068 - 99,220,203 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl399,048,481 - 99,112,843 (+)Ensembl
GRCm38.p6 Ensembl399,141,165 - 99,205,527 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135960   ⟹   ENSMUSP00000142470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl399,048,388 - 99,126,519 (+)Ensembl
GRCm38.p6 Ensembl399,141,072 - 99,219,203 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145650   ⟹   ENSMUSP00000142723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl399,048,409 - 99,146,502 (+)Ensembl
GRCm38.p6 Ensembl399,141,093 - 99,239,186 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198044   ⟹   ENSMUSP00000142361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl399,048,412 - 99,123,917 (+)Ensembl
GRCm38.p6 Ensembl399,141,096 - 99,216,601 (+)Ensembl
RefSeq Acc Id: NM_001418997   ⟹   NP_001405926
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39399,048,406 - 99,128,159 (+)NCBI
RefSeq Acc Id: NM_027462   ⟹   NP_081738
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39399,048,406 - 99,128,159 (+)NCBI
GRCm38399,141,090 - 99,220,203 (+)NCBI
MGSCv37398,945,013 - 99,024,126 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185000
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39399,048,406 - 99,128,159 (+)NCBI
RefSeq Acc Id: XM_006502053   ⟹   XP_006502116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39399,047,423 - 99,128,546 (+)NCBI
GRCm38399,140,107 - 99,217,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319717   ⟹   XP_017175206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39399,047,423 - 99,123,616 (+)NCBI
GRCm38399,140,107 - 99,215,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252815   ⟹   XP_030108675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39399,048,460 - 99,128,546 (+)NCBI
GRCm38399,141,144 - 99,221,230 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001783742
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39399,047,423 - 99,128,546 (+)NCBI
GRCm38399,140,107 - 99,221,230 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081738   ⟸   NM_027462
- Peptide Label: isoform 1
- UniProtKB: Q8BFV8 (UniProtKB/Swiss-Prot),   Q9CYK1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502116   ⟸   XM_006502053
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JDR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175206   ⟸   XM_017319717
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030108675   ⟸   XM_030252815
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000142361   ⟸   ENSMUST00000198044
RefSeq Acc Id: ENSMUSP00000142723   ⟸   ENSMUST00000145650
RefSeq Acc Id: ENSMUSP00000142470   ⟸   ENSMUST00000135960
RefSeq Acc Id: ENSMUSP00000004343   ⟸   ENSMUST00000004343
RefSeq Acc Id: NP_001405926   ⟸   NM_001418997
- Peptide Label: isoform 2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CYK1-F1-model_v2 AlphaFold Q9CYK1 1-360 view protein structure

Promoters
RGD ID:6834616
Promoter ID:MM_KWN:35497
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107012,   OTTMUST00000015861,   OTTMUST00000015865,   OTTMUST00000015866,   OTTMUST00000015867
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36398,944,871 - 98,945,407 (+)MPROMDB
RGD ID:6881786
Promoter ID:EPDNEW_M4344
Type:multiple initiation site
Name:Wars2_1
Description:Mus musculus tryptophanyl tRNA synthetase 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38399,141,090 - 99,141,150EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917810 AgrOrtholog
Ensembl Genes ENSMUSG00000004233 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004343 ENTREZGENE
  ENSMUST00000004343.7 UniProtKB/Swiss-Prot
  ENSMUST00000135960.8 UniProtKB/TrEMBL
  ENSMUST00000145650.8 UniProtKB/TrEMBL
  ENSMUST00000198044.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.620 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyrosyl-Transfer RNA Synthetase UniProtKB/Swiss-Prot
InterPro aa-tRNA-synth_I_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  aa-tRNA-synth_Ic UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trp-tRNA-ligase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trp-tRNA-ligase_bac-type UniProtKB/Swiss-Prot
KEGG Report mmu:70560 UniProtKB/Swiss-Prot
MGD MGI:1917810 ENTREZGENE
NCBI Gene 70560 ENTREZGENE
PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL UniProtKB/Swiss-Prot
  TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL UniProtKB/Swiss-Prot
  TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL UniProtKB/TrEMBL
  TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam tRNA-synt_1b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wars2 PhenoGen
PRINTS TRNASYNTHTRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Nucleotidylyl transferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDG7_MOUSE UniProtKB/TrEMBL
  A0A0G2JDR5 ENTREZGENE, UniProtKB/TrEMBL
  Q8BFV8 ENTREZGENE
  Q8BZQ9_MOUSE UniProtKB/TrEMBL
  Q9CYK1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BFV8 UniProtKB/Swiss-Prot