Coch (cochlin) - Rat Genome Database

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Gene: Coch (cochlin) Mus musculus
Analyze
Symbol: Coch
Name: cochlin
RGD ID: 1318366
MGI Page MGI
Description: Predicted to enable collagen binding activity. Acts upstream of or within sensory perception of sound. Located in extracellular matrix. Is expressed in central nervous system; inner ear; olfactory epithelium; and vibrissa. Used to study autosomal dominant nonsyndromic deafness 9. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW122937; coagulation factor C homolog (Limulus polyphemus); Coch-5B; Coch-5B2; D12H14S564; D12H14S564E
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391251,640,156 - 51,652,558 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1251,640,124 - 51,652,554 (+)EnsemblGRCm39 Ensembl
GRCm381251,593,283 - 51,606,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,593,341 - 51,605,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv371252,694,442 - 52,706,760 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361252,515,075 - 52,527,393 (+)NCBIMGSCv36mm8
Celera1252,896,695 - 52,909,012 (+)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1222.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
aristolochic acid A  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
diazinon  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP)
epoxiconazole  (EXP)
ethanol  (EXP)
folic acid  (EXP)
gallic acid  (ISO)
genistein  (EXP)
ibuprofen  (ISO)
isotretinoin  (ISO)
lead(0)  (ISO)
methimazole  (ISO)
methoxyacetic acid  (ISO)
methylarsonic acid  (EXP)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
Monobutylphthalate  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (EXP)
phenylmercury acetate  (ISO)
potassium bromate  (ISO)
progesterone  (EXP)
SB 431542  (ISO)
scopolamine  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Mutations in a novel cochlear gene cause DFNA9, a human nonsyndromic deafness with vestibular dysfunction. Robertson NG, etal., Nat Genet. 1998 Nov;20(3):299-303.
Additional References at PubMed
PMID:8889548   PMID:9119401   PMID:9441737   PMID:9931344   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11278165   PMID:11709536   PMID:12477932   PMID:12642503  
PMID:14657014   PMID:15489334   PMID:15579465   PMID:16078052   PMID:16141072   PMID:16141073   PMID:16297912   PMID:16332271   PMID:16481359   PMID:16602821   PMID:18353863   PMID:18697796  
PMID:20097680   PMID:20228067   PMID:20346939   PMID:21073934   PMID:21267068   PMID:21308776   PMID:21873635   PMID:21925491   PMID:22496787   PMID:23344953   PMID:23426694   PMID:23684986  
PMID:24727668   PMID:24952082   PMID:24952961   PMID:25049087   PMID:30905438   PMID:32325033   PMID:34003106   PMID:34108864   PMID:34768980   PMID:34965426   PMID:36288084  


Genomics

Comparative Map Data
Coch
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391251,640,156 - 51,652,558 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1251,640,124 - 51,652,554 (+)EnsemblGRCm39 Ensembl
GRCm381251,593,283 - 51,606,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,593,341 - 51,605,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv371252,694,442 - 52,706,760 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361252,515,075 - 52,527,393 (+)NCBIMGSCv36mm8
Celera1252,896,695 - 52,909,012 (+)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1222.11NCBI
COCH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381430,874,559 - 30,895,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1430,874,514 - 30,895,065 (+)EnsemblGRCh38hg38GRCh38
GRCh371431,343,765 - 31,359,824 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361430,413,516 - 30,429,573 (+)NCBINCBI36Build 36hg18NCBI36
Build 341430,413,515 - 30,429,573NCBI
Celera1411,209,192 - 11,225,274 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1411,460,861 - 11,476,943 (+)NCBIHuRef
CHM1_11431,342,916 - 31,358,998 (+)NCBICHM1_1
T2T-CHM13v2.01425,072,046 - 25,093,101 (+)NCBIT2T-CHM13v2.0
Coch
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8674,766,485 - 74,780,504 (+)NCBIGRCr8
mRatBN7.2669,031,139 - 69,045,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,031,167 - 69,045,109 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,453,486 - 69,467,230 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0669,760,133 - 69,773,877 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,199,622 - 69,213,366 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,359,702 - 72,373,710 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,359,791 - 72,373,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0681,924,131 - 81,937,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4671,692,946 - 71,697,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1671,605,998 - 71,709,462 (+)NCBI
Celera667,908,175 - 67,912,285 (+)NCBICelera
Cytogenetic Map6q23NCBI
Coch
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540929,639,274 - 29,650,874 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540929,639,274 - 29,650,389 (-)NCBIChiLan1.0ChiLan1.0
COCH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,201,552 - 32,217,707 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11431,418,054 - 31,437,661 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01411,649,072 - 11,665,231 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11429,848,611 - 29,864,662 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1429,848,611 - 29,868,943 (+)Ensemblpanpan1.1panPan2
COCH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,215,101 - 10,230,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,214,536 - 10,233,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha810,141,496 - 10,159,279 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0810,316,037 - 10,333,827 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,316,040 - 10,334,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,000,301 - 10,018,042 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,076,429 - 10,094,218 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,351,979 - 10,369,756 (+)NCBIUU_Cfam_GSD_1.0
Coch
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,111,312 - 42,127,606 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364945,617,016 - 5,633,083 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364945,617,201 - 5,633,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COCH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl768,576,153 - 68,594,077 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1768,580,124 - 68,595,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Coch
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248201,366,384 - 1,381,099 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248201,367,582 - 1,381,630 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Coch
306 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:120
Interacting mature miRNAs:130
Transcripts:ENSMUST00000085412, ENSMUST00000164782
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse

Markers in Region
AW122937  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381251,604,983 - 51,605,073UniSTSGRCm38
MGSCv371252,705,970 - 52,706,060UniSTSGRCm37
Celera1252,908,222 - 52,908,312UniSTS
Cytogenetic Map12C1UniSTS
cM Map1223.0UniSTS
Whitehead/MRC_RH12431.59UniSTS
AF006741  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381251,605,314 - 51,605,432UniSTSGRCm38
MGSCv371252,706,301 - 52,706,419UniSTSGRCm37
Celera1252,908,553 - 52,908,671UniSTS
Cytogenetic Map12C1UniSTS
cM Map1223.0UniSTS
Whitehead/MRC_RH12431.26UniSTS
Coch  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381251,595,337 - 51,595,472UniSTSGRCm38
MGSCv371252,696,324 - 52,696,459UniSTSGRCm37
Celera1252,898,578 - 52,898,713UniSTS
Cytogenetic Map12C1UniSTS
cM Map1223.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001198835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF006741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z78163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000085412   ⟹   ENSMUSP00000082533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1251,640,140 - 51,652,544 (+)Ensembl
GRCm38.p6 Ensembl1251,593,357 - 51,605,761 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164782   ⟹   ENSMUSP00000128127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1251,640,124 - 51,652,554 (+)Ensembl
GRCm38.p6 Ensembl1251,593,341 - 51,605,771 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1251,640,157 - 51,640,853 (+)Ensembl
GRCm38.p6 Ensembl1251,593,374 - 51,594,070 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1251,640,162 - 51,640,891 (+)Ensembl
GRCm38.p6 Ensembl1251,593,379 - 51,594,108 (+)Ensembl
RefSeq Acc Id: NM_001198835   ⟹   NP_001185764
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
GRCm381251,593,341 - 51,605,773 (+)NCBI
Celera1252,896,581 - 52,909,012 (+)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001409459   ⟹   NP_001396388
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NM_001409460   ⟹   NP_001396389
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NM_001409461   ⟹   NP_001396390
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NM_001409462   ⟹   NP_001396391
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NM_001409463   ⟹   NP_001396392
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NM_001409464   ⟹   NP_001396393
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NM_007728   ⟹   NP_031754
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
GRCm381251,593,341 - 51,605,773 (+)NCBI
MGSCv371252,694,442 - 52,706,760 (+)RGD
Celera1252,896,581 - 52,909,012 (+)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176845
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NR_176846
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NR_176847
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391251,640,156 - 51,652,558 (+)NCBI
RefSeq Acc Id: NP_031754   ⟸   NM_007728
- Peptide Label: isoform 2 precursor
- UniProtKB: Q3TAF5 (UniProtKB/Swiss-Prot),   Q9QWK6 (UniProtKB/Swiss-Prot),   Q62507 (UniProtKB/Swiss-Prot),   Q3U0Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185764   ⟸   NM_001198835
- Peptide Label: isoform 2 precursor
- UniProtKB: Q3TAF5 (UniProtKB/Swiss-Prot),   Q9QWK6 (UniProtKB/Swiss-Prot),   Q62507 (UniProtKB/Swiss-Prot),   Q3U0Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128127   ⟸   ENSMUST00000164782
RefSeq Acc Id: ENSMUSP00000082533   ⟸   ENSMUST00000085412
RefSeq Acc Id: NP_001396388   ⟸   NM_001409459
- Peptide Label: isoform 1 precursor
- UniProtKB: Q3U0Z1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396390   ⟸   NM_001409461
- Peptide Label: isoform 4 precursor
- UniProtKB: Q3U0Z1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396392   ⟸   NM_001409463
- Peptide Label: isoform 6 precursor
- UniProtKB: Q3U0Z1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396393   ⟸   NM_001409464
- Peptide Label: isoform 7 precursor
- UniProtKB: Q3U0Z1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396391   ⟸   NM_001409462
- Peptide Label: isoform 5 precursor
- UniProtKB: Q3U0Z1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396389   ⟸   NM_001409460
- Peptide Label: isoform 3 precursor
- UniProtKB: Q3U0Z1 (UniProtKB/TrEMBL)
Protein Domains
LCCL   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62507-F1-model_v2 AlphaFold Q62507 1-552 view protein structure

Promoters
RGD ID:8678238
Promoter ID:EPDNEW_M17150
Type:multiple initiation site
Name:Coch_1
Description:Mus musculus cochlin , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381251,593,375 - 51,593,435EPDNEW
RGD ID:6822809
Promoter ID:MM_KWN:11610
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:NM_007728,   UC007NMR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361252,694,431 - 52,694,931 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1278313 AgrOrtholog
Ensembl Genes ENSMUSG00000020953 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000085412 ENTREZGENE
  ENSMUST00000085412.7 UniProtKB/Swiss-Prot
  ENSMUST00000164782 ENTREZGENE
  ENSMUST00000164782.10 UniProtKB/Swiss-Prot
Gene3D-CATH 2.170.130.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LCCL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LCCL_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12810 UniProtKB/Swiss-Prot
MGD MGI:1278313 ENTREZGENE
NCBI Gene 12810 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24020:SF36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LCCL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Coch PhenoGen
PRINTS VWFADOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LCCL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LCCL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF69848 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COCH_MOUSE UniProtKB/Swiss-Prot
  Q3TAF5 ENTREZGENE
  Q3U0Z1 ENTREZGENE, UniProtKB/TrEMBL
  Q62507 ENTREZGENE
  Q9QWK6 ENTREZGENE
UniProt Secondary Q3TAF5 UniProtKB/Swiss-Prot
  Q9QWK6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Coch  cochlin    coagulation factor C homolog (Limulus polyphemus)  Symbol and/or name change 5135510 APPROVED