Rbm38 (RNA binding motif protein 38)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Rbm38 (RNA binding motif protein 38) Mus musculus

Analyze

Symbol:

Rbm38

Name:

RNA binding motif protein 38

RGD ID:

1318309

MGI Page

MGI

Description:

Enables mRNA binding activity. Involved in regulation of myotube differentiation. Predicted to be located in nucleus. Predicted to be active in cytosol. Is expressed in several structures, including central nervous system; early embryo; limb; oocyte; and sensory organ. Orthologous to human RBM38 (RNA binding motif protein 38).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Rn; RNA-binding motif protein 38; RNA-binding protein 38; RNA-binding region (RNP1, RRM) containing 1; RNA-binding region-containing protein 1; Rnpc1; Seb; Seb4; seb4 mRNA; seb4-like; Seb4l; ssDNA-binding protein SEB4

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM38 (RNA binding motif protein 38)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rbm38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm38 (RNA binding motif protein 38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RBM24 (RNA binding motif protein 24)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rbm38 (RNA binding motif protein 38)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RBM38 (RNA binding motif protein 38)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	rbm38 (RNA binding motif protein 38)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|ZFIN)
Caenorhabditis elegans (roundworm):	sup-12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	172,863,680 - 172,876,527 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	172,862,291 - 172,876,527 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	173,021,891 - 173,034,734 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	173,020,498 - 173,034,734 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	172,847,403 - 172,860,235 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	172,664,872 - 172,677,673 (+)	NCBI		MGSCv36	mm8
Celera	2	178,987,275 - 179,000,104 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

Neoplasm Invasiveness (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP,ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

buta-1,3-diene (EXP)

cisplatin (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

endosulfan (ISO)

ethyl methanesulfonate (ISO)

fipronil (ISO)

flutamide (ISO)

folic acid (EXP)

glycidol (ISO)

ivermectin (ISO)

kojic acid (ISO)

Licochalcone B (ISO)

methapyrilene (ISO)

methoxyacetic acid (ISO)

methyl methanesulfonate (ISO)

Monobutylphthalate (ISO)

paracetamol (EXP,ISO)

quercetin (ISO)

quercitrin (ISO)

rotenone (ISO)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (ISO)

trichloroethene (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-UTR-mediated mRNA stabilization (ISO)

cell differentiation (IEA)

DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest (ISO)

DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (ISO)

mRNA processing (IEA)

mRNA stabilization (IBA)

negative regulation of cell population proliferation (ISO)

regulation of alternative mRNA splicing, via spliceosome (IBA)

regulation of cell cycle (ISO)

regulation of myotube differentiation (IDA)

regulation of RNA splicing (ISO)

RNA splicing (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IBA,ISO)

nucleus (ISO)

Molecular Function

mRNA 3'-UTR binding (ISO)

mRNA binding (IMP,ISO)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal erythrocyte morphology (IAGP)

abnormal spleen B cell follicle morphology (IAGP)

abnormal tumor susceptibility (IAGP)

anemia (IAGP)

decreased bone marrow cell number (IAGP)

decreased gonadal fat pad weight (IAGP)

decreased hematocrit (IAGP)

decreased hemoglobin content (IAGP)

decreased mortality induced by ionizing radiation (IAGP)

decreased sarcoma incidence (IAGP)

decreased total body fat amount (IAGP)

decreased tumor incidence (IAGP)

decreased tumor latency (IAGP)

enlarged spleen (IAGP)

extramedullary hematopoiesis (IAGP)

hepatic steatosis (IAGP)

increased hemangiosarcoma incidence (IAGP)

increased hepatoma incidence (IAGP)

increased lymphoma incidence (IAGP)

increased megakaryocyte cell number (IAGP)

increased mortality induced by gamma-irradiation (IAGP)

increased spleen white pulp amount (IAGP)

increased tumor incidence (IAGP)

lordokyphosis (IAGP)

premature aging (IAGP)

premature death (IAGP)

spontaneous skin ulceration (IAGP)

weight loss (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Somatic cell hybrids for high-density mapping of chromosome 2 breakpoints in radiation-induced myeloid leukemia cell lines from inbred mice.	Pazzaglia S, etal., Mol Carcinog 2000 Mar;27(3):219-28.
3.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10842088	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15489334	PMID:16033648	PMID:16141072	PMID:16141073
PMID:16930510	PMID:17015433	PMID:17050675	PMID:19817877	PMID:20059953	PMID:21267068	PMID:21764855	PMID:21873635	PMID:22371495	PMID:22508983	PMID:23630078	PMID:23836903
PMID:24142875	PMID:25142465	PMID:25512531	PMID:26902285	PMID:28850611	PMID:29330147	PMID:29520104	PMID:31077711	PMID:31777931	PMID:32774357	PMID:33664057	PMID:33749946
PMID:34133714	PMID:35476669	PMID:36478739

Genomics

Comparative Map Data

Rbm38
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	172,863,680 - 172,876,527 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	172,862,291 - 172,876,527 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	173,021,891 - 173,034,734 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	173,020,498 - 173,034,734 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	172,847,403 - 172,860,235 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	172,664,872 - 172,677,673 (+)	NCBI		MGSCv36	mm8
Celera	2	178,987,275 - 179,000,104 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI

RBM38
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	57,391,396 - 57,409,333 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	20	57,391,396 - 57,409,333 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	55,966,452 - 55,984,389 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	55,399,870 - 55,417,795 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	55,399,869 - 55,417,790	NCBI
Celera	20	52,706,709 - 52,724,603 (+)	NCBI		Celera
Cytogenetic Map	20	q13.31	NCBI
HuRef	20	52,749,536 - 52,765,964 (+)	NCBI		HuRef
CHM1_1	20	55,867,425 - 55,885,455 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	59,169,162 - 59,187,091 (+)	NCBI		T2T-CHM13v2.0

Rbm38
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	161,801,550 - 161,814,381 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	161,801,577 - 161,814,381 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	165,613,416 - 165,625,997 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	174,112,358 - 174,124,939 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	171,854,175 - 171,866,756 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	171,037,891 - 171,050,500 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	171,037,957 - 171,050,475 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	177,104,361 - 177,116,965 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	163,885,488 - 163,898,314 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	163,785,484 - 163,804,355 (+)	NCBI
Celera	3	160,995,091 - 161,007,892 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Rbm38
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	2,036,124 - 2,052,139 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	2,036,314 - 2,050,882 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBM38
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	20	55,010,623 - 55,027,746 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	20	53,731,641 - 53,749,688 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RBM38
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	42,396,356 - 42,410,543 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	42,396,352 - 42,409,240 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	41,643,647 - 41,658,028 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	43,261,581 - 43,275,949 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	43,261,408 - 43,275,957 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	42,346,444 - 42,360,811 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	42,486,219 - 42,500,591 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	43,144,439 - 43,158,828 (+)	NCBI		UU_Cfam_GSD_1.0

Rbm38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	183,056,936 - 183,072,570 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936530	227,266 - 249,285 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM38
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	57,783,154 - 57,797,990 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	57,783,156 - 57,802,495 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	64,947,372 - 64,962,216 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM38
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	6,709,975 - 6,727,534 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	6,711,458 - 6,727,353 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	54,772,349 - 54,789,867 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm38
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	23,854,023 - 23,868,345 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	23,854,069 - 23,868,016 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	4214
Count of miRNA genes:	729
Interacting mature miRNAs:	924
Transcripts:	ENSMUST00000029014, ENSMUST00000130430, ENSMUST00000155512, ENSMUST00000173393, ENSMUST00000173720, ENSMUST00000173878, ENSMUST00000173979, ENSMUST00000173997
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
1301618	Bglu1_m	blood glucose level 1 (mouse)			Not determined		2	117942930	174324863	Mouse
11341717	Rvfs1_m	Rift Valley fever susceptibility 1 (mouse)					2	135432544	173449616	Mouse
1300846	Pbwg11_m	postnatal body weight growth 11 (mouse)			Not determined		2	138966600	172966729	Mouse
11353826	Bdln10_m	body length 10 (mouse)					2	140441482	174441482	Mouse
12801461	Intim1_m	intima modifier 1 (mouse)					2	142428347	176428450	Mouse
12801456	Intmrm1_m	intima/media ratio modifier 1 (mouse)					2	142428347	176428450	Mouse
1301783	Bhr1_m	bronchial hyperresponsiveness 1 (mouse)			Not determined		2	142593476	178442452	Mouse
1300867	Lore2_m	loss of righting induced by ethanol 2 (mouse)			Not determined		2	144515861	180896594	Mouse
1302013	Tbbmd3_m	total body bone mineral density 3 (mouse)			Not determined		2	145196949	179197085	Mouse
1300806	Aod4_m	autoimmune ovarian dysgenesis 4 (mouse)			Not determined		2	145228719	179228841	Mouse
1301865	Hdlq19_m	HDL QTL 19 (mouse)			Not determined		2	145518775	179518926	Mouse
12790983	Bwq12_m	body weight QTL 12 (mouse)					2	148238204	181755017	Mouse
4142211	Nilac3_m	nicotine induced locomotor activity 3 (mouse)			Not determined		2	148664893	181755017	Mouse
1558917	Gct8_m	granulosa cell tumorigenesis 8 (mouse)			Not determined		2	149236907	181755017	Mouse
1300751	Bdt1_m	bone density traits 1 (mouse)			Not determined		2	149988902	181755017	Mouse
1301085	Lrnx10_m	learning-contextual 10 (mouse)			Not determined		2	150212221	181755017	Mouse
11038701	Ltpr2e_m	Leishmania tropica response 2e (mouse)					2	150212221	181755017	Mouse
4142450	Lmr16_m	leishmaniasis resistance 16 (mouse)			Not determined		2	150212221	181755017	Mouse
12910520	Scgq3_m	spontaneous crescentic glomerulonephritis QTL 3 (mouse)					2	151709273	174389124	Mouse
1301019	Bmd6_m	bone mineral density 6 (mouse)			Not determined		2	151778297	181755017	Mouse
14747002	Mancz3_m	mandible centroid size 3 (mouse)					2	152329820	181755017	Mouse
1300622	Cfld1_m	cystic fibrosis lung disease 1 (mouse)			Not determined		2	155823920	181755017	Mouse
1357537	Lith12_m	lithogenic gene 12 (mouse)			Not determined		2	156196464	181755017	Mouse
1300688	Nidd2k_m	Nidd2 on KK-A (mouse)			Not determined		2	158078337	178442452	Mouse
1302003	Sluc17_m	susceptibility to lung cancer 17 (mouse)			Not determined		2	162433493	181755017	Mouse
1558991	Tailq4_m	tail length QTL 4 (mouse)			Not determined		2	162736926	178442452	Mouse
1357435	Epfq2_m	epididymal fat pad weight QTL 2 (mouse)			Not determined		2	162736926	178442452	Mouse
1301677	Alcp6_m	alcohol preference locus 6 (mouse)			Not determined		2	163486407	181755017	Mouse
1301348	Alcp5_m	alcohol preference locus 5 (mouse)			Not determined		2	163486407	181755017	Mouse
1300676	Prdt2_m	prion disease incubation time 2 (mouse)			Not determined		2	164515154	181755017	Mouse
12738409	Lfibq1_m	liver fibrosis QTL 1 (mouse)					2	167716420	179207088	Mouse
12910811	Pwbwq3_m	pre-weaning body weight QTL 3 (mouse)					2	169794802	178920791	Mouse

Markers in Region

Rbm38

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	H3	UniSTS
cM Map	2		UniSTS

X75316

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,034,492 - 173,034,652	UniSTS	GRCm38
MGSCv37	2	172,859,993 - 172,860,153	UniSTS	GRCm37
Celera	2	178,999,862 - 179,000,022	UniSTS
Cytogenetic Map	2	H3	UniSTS
Whitehead/MRC_RH	2	1931.05	UniSTS
Whitehead_YAC	2		UniSTS

X75316

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,033,952 - 173,034,071	UniSTS	GRCm38
MGSCv37	2	172,859,453 - 172,859,572	UniSTS	GRCm37
Celera	2	178,999,322 - 178,999,441	UniSTS
Cytogenetic Map	2	H3	UniSTS
Whitehead/MRC_RH	2	1931.05	UniSTS

Rbm38

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	H3	UniSTS
cM Map	2		UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006499924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030251891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030251892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI573584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK162141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK166609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK172625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL928599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC006687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV644612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV653380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000029014 ⟹ ENSMUSP00000029014

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,863,695 - 172,876,518 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,021,902 - 173,034,725 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000130430

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,864,843 - 172,876,493 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,023,050 - 173,034,700 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000155512

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,863,706 - 172,876,521 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,021,913 - 173,034,728 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000173393 ⟹ ENSMUSP00000133816

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,862,291 - 172,876,527 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,020,498 - 173,034,734 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000173720 ⟹ ENSMUSP00000133757

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,863,904 - 172,875,443 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,022,111 - 173,033,650 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000173878 ⟹ ENSMUSP00000133388

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,863,692 - 172,875,706 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,021,899 - 173,033,913 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000173979 ⟹ ENSMUSP00000133681

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,864,624 - 172,875,971 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,022,831 - 173,034,178 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000173997 ⟹ ENSMUSP00000133464

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	172,864,231 - 172,875,502 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,022,438 - 173,033,709 (+)	Ensembl

RefSeq Acc Id:

NM_019547 ⟹ NP_062420

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	172,863,695 - 172,876,527 (+)	NCBI
GRCm38	2	173,021,902 - 173,034,734 (+)	NCBI
MGSCv37	2	172,847,403 - 172,860,235 (+)	RGD
Celera	2	178,987,275 - 179,000,104 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

AAAGGCGGCCGGCAGCTCGCAGGGCGCGGAGTAGACGCTTCGCGGCGGACGGAGAAGCGGCGCG
GGACAGCGTGGGGAACTCGGATTCGGCCTGGGACACCCCCGCATGCGCCGGCCGGCTCGGTAGC
GGCGGCCCCGATGCTGCTGCAGCCCGCGTGCTCCCCGAGTGTGTTTCCGCGGCCGTCCGCCGCC
CCCAGCGCCATGCACGGCTCACAGAAGGACACCACGTTCACCAAGATCTTCGTGGGCGGCCTGC
CCTACCACACCACCGACGCATCGCTCAGAAAGTACTTCGAGGGCTTCGGAGACATCGAGGAGGC
CGTGGTCATCACCGACCGCCAGACCGGCAAGTCCCGCGGCTACGGCTTCGTGACCATGGCAGAT
CGGGCAGCGGCTGATAGGGCTTGCAAAGACCCTAACCCTATCATCGATGGTCGCAAGGCCAATG
TGAACCTGGCCTACCTGGGTGCCAAGCCTAGGAGCTTACAGACGGGCTTTGCTGTTGGTGTGCA
GCAACTACACCCCACCTTGATCCAGCGCACCTACGGGCTGACTCCTCACTACATCTACCCACCA
GCCATTGTGCAGCCCAGCGTGGTGATCCCTGCCACCCCTGTCCCGTCACTGTCCTCGCCCTACC
TTGAGTATACACCAGCCAGCCCAGCCTACGCCCAGTACCCGCCAGCCACTTACGACCAGTACCC
ATATGCTGCCTCACCTGCTGCAGCCACCAGCTTCGTGGGCTACGGCTACCCTGCTGCCGTGCCC
CAAGCCTTGTCTGCTGCTGCACCTGCAGGCACCACCTTCGTGCAGTACCAGGCACCTCAGCTAC
AGCCTGACAGGATGCAGTGATGCGCGTCCTGCCCAGGGCCACAGCTGCCACCTGCCAGCCTCTG
GAGCCACCACCATTTGGGTCTCCTCAGGCCCCCGGGCCCACCTGCCCTGAAGGCAGCAGCAAGT
TTCTTCTGCAGCCCTGCCGTGCTTGAGGAAGGGCCTGAGGAGGAAGGGACACTCACTCTGGAAG
CTCTGCAGCCACTCCGTGCCAGGTGCCTTAACTCTGGGACGTGTACAGACGTCCTCCCTCCTCT
TTGGGAACTGTCCTCTTGGTGGATCCGGGTTCCTGACCCCACCTCCCCCCAGTTGCCCCTCAGT
CGAAGCACTGTGCCATGTCCTGCTGGGAATTTTCTGCCATGCAGGCAAGACCATCAGCACCGAG
AACCCCAAACCTGTTTTGTACTTAGAGACTGGCTTTGGTCAGTAGTTCACTGTGGAGACAATGA
CAGTATTCTCTGTGCCAGTGTCGCTGATGGAGCTCCCCCTCCCCACAGGGCTGCCATTACCAGA
CCACGGCCCTGCAGGGCCCTGGGCTCCTGTCTGCTGATGCTGCCCGCCTCACCTGCAGAGGTGC
CCATCAGGGCGAGTTCTCAGGTGTCTGTTGCTGTGCCATGGGGGCCTTCTTCCTGGCCCTGTGC
CCCTCAAGCAGGCTCTGCCCACCCACCCTCCCGTTGTCACCTGTGCCAGTCTGACCTAGCTGCA
CAGAGAGAAGGTCCAGCCCACGTCTAGGAGGGGAGGAGTGGGTATCTCTGGCAGCATGGGCTGC
CCGCAGGCTGGGCAGTGGGTCCCTCCACACCTACCTCAGGGAGCCAGTGTGCGGGCGGGAACTC
CACAGCATGCCTGTTAGTCAAGGCCTGGAGGACAGAGGGAGTAATGTTATAATAATATTTTTAT
TAGAATGTTCTGATTATAAAAAATAAAACTTGTTTTCTTTAAAGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006499924 ⟹ XP_006499987

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	172,863,680 - 172,876,527 (+)	NCBI
GRCm38	2	173,021,904 - 173,034,734 (+)	NCBI

Sequence:

show sequence

GGCGTGGCCGGCTACAAAGGCGGCCGGCAGCTCGCAGGGCGCGGAGTAGACGCTTCGCGGCGGA
CGGAGAAGCGGCGCGGGACAGCGTGGGGAACTCGGATTCGGCCTGGGACACCCCCGCATGCGCC
GGCCGGCTCGGTAGCGGCGGCCCCGATGCTGCTGCAGCCCGCGTGCTCCCCGAGTGTGTTTCCG
CGGCCGTCCGCCGCCCCCAGCGCCATGCACGGCTCACAGAAGGACACCACGTTCACCAAGATCT
TCGTGGGCGGCCTGCCCTACCACACCACCGACGCATCGCTCAGAAAGTACTTCGAGGGCTTCGG
AGACATCGAGGAGGCCGTGGTCATCACCGACCGCCAGACCGGTGACCATGGCAGATCGGGCAGC
GGCTGATAGGGCTTGCAAAGACCCTAACCCTATCATCGATGGTCGCAAGGCCAATGTGAACCTG
GCCTACCTGGGTGCCAAGCCTAGGAGCTTACAGACGGGCTTTGCTGTTGGTGTGCAGCAACTAC
ACCCCACCTTGATCCAGCGCACCTACGGGCTGACTCCTCACTACATCTACCCACCAGCCATTGT
GCAGCCCAGCGTGGTGATCCCTGCCACCCCTGTCCCGTCACTGTCCTCGCCCTACCTTGAGTAT
ACACCAGCCAGCCCAGCCTACGCCCAGTACCCGCCAGCCACTTACGACCAGTACCCATATGCTG
CCTCACCTGCTGCAGCCACCAGCTTCGTGGGCTACGGCTACCCTGCTGCCGTGCCCCAAGCCTT
GTCTGCTGCTGCACCTGCAGGCACCACCTTCGTGCAGTACCAGGCACCTCAGCTACAGCCTGAC
AGGATGCAGTGATGCGCGTCCTGCCCAGGGCCACAGCTGCCACCTGCCAGCCTCTGGAGCCACC
ACCATTTGGGTCTCCTCAGGCCCCCGGGCCCACCTGCCCTGAAGGCAGCAGCAAGTTTCTTCTG
CAGCCCTGCCGTGCTTGAGGAAGGGCCTGAGGAGGAAGGGACACTCACTCTGGAAGCTCTGCAG
CCACTCCGTGCCAGGTGCCTTAACTCTGGGACGTGTACAGACGTCCTCCCTCCTCTTTGGGAAC
TGTCCTCTTGGTGGATCCGGGTTCCTGACCCCACCTCCCCCCAGTTGCCCCTCAGTCGAAGCAC
TGTGCCATGTCCTGCTGGGAATTTTCTGCCATGCAGGCAAGACCATCAGCACCGAGAACCCCAA
ACCTGTTTTGTACTTAGAGACTGGCTTTGGTCAGTAGTTCACTGTGGAGACAATGACAGTATTC
TCTGTGCCAGTGTCGCTGATGGAGCTCCCCCTCCCCACAGGGCTGCCATTACCAGACCACGGCC
CTGCAGGGCCCTGGGCTCCTGTCTGCTGATGCTGCCCGCCTCACCTGCAGAGGTGCCCATCAGG
GCGAGTTCTCAGGTGTCTGTTGCTGTGCCATGGGGGCCTTCTTCCTGGCCCTGTGCCCCTCAAG
CAGGCTCTGCCCACCCACCCTCCCGTTGTCACCTGTGCCAGTCTGACCTAGCTGCACAGAGAGA
AGGTCCAGCCCACGTCTAGGAGGGGAGGAGTGGGTATCTCTGGCAGCATGGGCTGCCCGCAGGC
TGGGCAGTGGGTCCCTCCACACCTACCTCAGGGAGCCAGTGTGCGGGCGGGAACTCCACAGCAT
GCCTGTTAGTCAAGGCCTGGAGGACAGAGGGAGTAATGTTATAATAATATTTTTATTAGAATGT
TCTGATTATAAAAAATAAAACTTGTTTTCTTTAAAGAAAAA

hide sequence

RefSeq Acc Id:

XM_030251891 ⟹ XP_030107751

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	172,863,684 - 172,876,527 (+)	NCBI
GRCm38	2	173,021,891 - 173,034,734 (+)	NCBI

Sequence:

show sequence

TGGCCGGCTACAAAGGCGGCCGGCAGCTCGCAGGGCGCGGAGTAGACGCTTCGCGGCGGACGGA
GAAGCGGCGCGGGACAGCGTGGGGAACTCGGATTCGGCCTGGGACACCCCCGCATGCGCCGGCC
GGCTCGGTAGCGGCGGCCCCGATGCTGCTGCAGCCCGCGTGCTCCCCGAGTGTGTTTCCGCGGC
CGTCCGCCGCCCCCAGCGCCATGCACGGCTCACAGAAGGACACCACGTTCACCAAGATCTTCGT
GGGCGGCCTGCCCTACCACACCACCGACGCATCGCTCAGAAAGTACTTCGAGGGCTTCGGAGAC
ATCGAGGAGGCCGTGGTCATCACCGACCGCCAGACCGGCAAGTCCCGCGGCTACGGCTTCGTGA
GTGCCCGCGGCGCGCGCACCTGCCGCCGCCCCTCCCCCACCGCCTCCCAGACCCGCCGCGCGCA
GCCGGGACTCCGGGGCTTCCCGGGGCCGTCGGCCCTTCCCCCACACTTTCCAGCTGCCCCAAAG
AAGCGTGACCATGGCAGATCGGGCAGCGGCTGATAGGGCTTGCAAAGACCCTAACCCTATCATC
GATGGTCGCAAGGCCAATGTGAACCTGGCCTACCTGGGTGCCAAGCCTAGGAGCTTACAGACGG
GCTTTGCTGTTGGTGTGCAGCAACTACACCCCACCTTGATCCAGCGCACCTACGGGCTGACTCC
TCACTACATCTACCCACCAGCCATTGTGCAGCCCAGCGTGGTGATCCCTGCCACCCCTGTCCCG
TCACTGTCCTCGCCCTACCTTGAGTATACACCAGCCAGCCCAGCCTACGCCCAGTACCCGCCAG
CCACTTACGACCAGTACCCATATGCTGCCTCACCTGCTGCAGCCACCAGCTTCGTGGGCTACGG
CTACCCTGCTGCCGTGCCCCAAGCCTTGTCTGCTGCTGCACCTGCAGGCACCACCTTCGTGCAG
TACCAGGCACCTCAGCTACAGCCTGACAGGATGCAGTGATGCGCGTCCTGCCCAGGGCCACAGC
TGCCACCTGCCAGCCTCTGGAGCCACCACCATTTGGGTCTCCTCAGGCCCCCGGGCCCACCTGC
CCTGAAGGCAGCAGCAAGTTTCTTCTGCAGCCCTGCCGTGCTTGAGGAAGGGCCTGAGGAGGAA
GGGACACTCACTCTGGAAGCTCTGCAGCCACTCCGTGCCAGGTGCCTTAACTCTGGGACGTGTA
CAGACGTCCTCCCTCCTCTTTGGGAACTGTCCTCTTGGTGGATCCGGGTTCCTGACCCCACCTC
CCCCCAGTTGCCCCTCAGTCGAAGCACTGTGCCATGTCCTGCTGGGAATTTTCTGCCATGCAGG
CAAGACCATCAGCACCGAGAACCCCAAACCTGTTTTGTACTTAGAGACTGGCTTTGGTCAGTAG
TTCACTGTGGAGACAATGACAGTATTCTCTGTGCCAGTGTCGCTGATGGAGCTCCCCCTCCCCA
CAGGGCTGCCATTACCAGACCACGGCCCTGCAGGGCCCTGGGCTCCTGTCTGCTGATGCTGCCC
GCCTCACCTGCAGAGGTGCCCATCAGGGCGAGTTCTCAGGTGTCTGTTGCTGTGCCATGGGGGC
CTTCTTCCTGGCCCTGTGCCCCTCAAGCAGGCTCTGCCCACCCACCCTCCCGTTGTCACCTGTG
CCAGTCTGACCTAGCTGCACAGAGAGAAGGTCCAGCCCACGTCTAGGAGGGGAGGAGTGGGTAT
CTCTGGCAGCATGGGCTGCCCGCAGGCTGGGCAGTGGGTCCCTCCACACCTACCTCAGGGAGCC
AGTGTGCGGGCGGGAACTCCACAGCATGCCTGTTAGTCAAGGCCTGGAGGACAGAGGGAGTAAT
GTTATAATAATATTTTTATTAGAATGTTCTGATTATAAAAAATAAAACTTGTTTTCTTTAAAGA
AAAA

hide sequence

RefSeq Acc Id:

XM_030251892 ⟹ XP_030107752

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	172,863,697 - 172,876,527 (+)	NCBI
GRCm38	2	173,021,904 - 173,034,734 (+)	NCBI

Sequence:

show sequence

AGGCGGCCGGCAGCTCGCAGGGCGCGGAGTAGACGCTTCGCGGCGGACGGAGAAGCGGCGCGGG
ACAGCGTGGGGAACTCGGATTCGGCCTGGGACACCCCCGCATGCGCCGGCCGGCTCGGTAGCGG
CGGCCCCGATGCTGCTGCAGCCCGCGTGCTCCCCGAGTGTGTTTCCGCGGCCGTCCGCCGCCCC
CAGCGCCATGCACGGCTCACAGAAGGACACCACGTTCACCAAGATCTTCGTGGGCGGCCTGCCC
TACCACACCACCGACGCATCGCTCAGAAAGTACTTCGAGGGCTTCGGAGACATCGAGGAGGCCG
TGGTCATCACCGACCGCCAGACCGGCAAGTCCCGCGGCTACGGCTTCGTGAGTGCCCGCGGCGC
GCGCACCTGCCGCCGCCCCTCCCCCACCGCCTCCCAGACCCGCCGCGCGCAGCCGGGACTCCGG
GGCTTCCCGGGGCCGTCGGCCCTTCCCCCACACTTTCCAGCTGCCCCAAAGAAGCGTAAGCTGT
TAGCGCCAGCGACTTGAAGACGGTTTCCCACTTCCTTCCACTCTAGTGTCCCCAAACTAATTCT
CTGAGAAAGTTAACGGTGACCATGGCAGATCGGGCAGCGGCTGATAGGGCTTGCAAAGACCCTA
ACCCTATCATCGATGGTCGCAAGGCCAATGTGAACCTGGCCTACCTGGGTGCCAAGCCTAGGAG
CTTACAGACGGGCTTTGCTGTTGGTGTGCAGCAACTACACCCCACCTTGATCCAGCGCACCTAC
GGGCTGACTCCTCACTACATCTACCCACCAGCCATTGTGCAGCCCAGCGTGGTGATCCCTGCCA
CCCCTGTCCCGTCACTGTCCTCGCCCTACCTTGAGTATACACCAGCCAGCCCAGCCTACGCCCA
GTACCCGCCAGCCACTTACGACCAGTACCCATATGCTGCCTCACCTGCTGCAGCCACCAGCTTC
GTGGGCTACGGCTACCCTGCTGCCGTGCCCCAAGCCTTGTCTGCTGCTGCACCTGCAGGCACCA
CCTTCGTGCAGTACCAGGCACCTCAGCTACAGCCTGACAGGATGCAGTGATGCGCGTCCTGCCC
AGGGCCACAGCTGCCACCTGCCAGCCTCTGGAGCCACCACCATTTGGGTCTCCTCAGGCCCCCG
GGCCCACCTGCCCTGAAGGCAGCAGCAAGTTTCTTCTGCAGCCCTGCCGTGCTTGAGGAAGGGC
CTGAGGAGGAAGGGACACTCACTCTGGAAGCTCTGCAGCCACTCCGTGCCAGGTGCCTTAACTC
TGGGACGTGTACAGACGTCCTCCCTCCTCTTTGGGAACTGTCCTCTTGGTGGATCCGGGTTCCT
GACCCCACCTCCCCCCAGTTGCCCCTCAGTCGAAGCACTGTGCCATGTCCTGCTGGGAATTTTC
TGCCATGCAGGCAAGACCATCAGCACCGAGAACCCCAAACCTGTTTTGTACTTAGAGACTGGCT
TTGGTCAGTAGTTCACTGTGGAGACAATGACAGTATTCTCTGTGCCAGTGTCGCTGATGGAGCT
CCCCCTCCCCACAGGGCTGCCATTACCAGACCACGGCCCTGCAGGGCCCTGGGCTCCTGTCTGC
TGATGCTGCCCGCCTCACCTGCAGAGGTGCCCATCAGGGCGAGTTCTCAGGTGTCTGTTGCTGT
GCCATGGGGGCCTTCTTCCTGGCCCTGTGCCCCTCAAGCAGGCTCTGCCCACCCACCCTCCCGT
TGTCACCTGTGCCAGTCTGACCTAGCTGCACAGAGAGAAGGTCCAGCCCACGTCTAGGAGGGGA
GGAGTGGGTATCTCTGGCAGCATGGGCTGCCCGCAGGCTGGGCAGTGGGTCCCTCCACACCTAC
CTCAGGGAGCCAGTGTGCGGGCGGGAACTCCACAGCATGCCTGTTAGTCAAGGCCTGGAGGACA
GAGGGAGTAATGTTATAATAATATTTTTATTAGAATGTTCTGATTATAAAAAATAAAACTTGTT
TTCTTTAAAGAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_062420	(Get FASTA)	NCBI Sequence Viewer
	XP_006499987	(Get FASTA)	NCBI Sequence Viewer
	XP_030107751	(Get FASTA)	NCBI Sequence Viewer
	XP_030107752	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85307	(Get FASTA)	NCBI Sequence Viewer
	BAE26841	(Get FASTA)	NCBI Sequence Viewer
	BAE36749	(Get FASTA)	NCBI Sequence Viewer
	BAE38891	(Get FASTA)	NCBI Sequence Viewer
	BAE43103	(Get FASTA)	NCBI Sequence Viewer
	EDL06620	(Get FASTA)	NCBI Sequence Viewer
	EDL06621	(Get FASTA)	NCBI Sequence Viewer
	EDL06622	(Get FASTA)	NCBI Sequence Viewer
	EDL06623	(Get FASTA)	NCBI Sequence Viewer
	Q62176	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_062420 ⟸ NM_019547

- UniProtKB:

Q922Z2 (UniProtKB/Swiss-Prot), Q62176 (UniProtKB/Swiss-Prot), A0A8C6I756 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLLQPACSPSVFPRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI
TDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLH
PTLIQRTYGLTPHYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYPPATYDQYPYAA
SPAAATSFVGYGYPAAVPQALSAAAPAGTTFVQYQAPQLQPDRMQ

hide sequence

RefSeq Acc Id:	XP_006499987 ⟸ XM_006499924
- Peptide Label:	isoform X1
- Sequence:	show sequence MADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYI YPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYPPATYDQYPYAASPAAATSFVGYGYPA AVPQALSAAAPAGTTFVQYQAPQLQPDRMQ hide sequence

RefSeq Acc Id:	XP_030107751 ⟸ XM_030251891
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_030107752 ⟸ XM_030251892
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSMUSP00000029014 ⟸ ENSMUST00000029014

RefSeq Acc Id:

ENSMUSP00000133816 ⟸ ENSMUST00000173393

RefSeq Acc Id:

ENSMUSP00000133757 ⟸ ENSMUST00000173720

RefSeq Acc Id:

ENSMUSP00000133388 ⟸ ENSMUST00000173878

RefSeq Acc Id:

ENSMUSP00000133681 ⟸ ENSMUST00000173979

RefSeq Acc Id:

ENSMUSP00000133464 ⟸ ENSMUST00000173997

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62176-F1-model_v2	AlphaFold	Q62176	1-237	view protein structure

Promoters

RGD ID:

6832283

Promoter ID:

MM_KWN:33258

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000040393, OTTMUST00000040394, OTTMUST00000040395

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	172,847,234 - 172,847,734 (+)	MPROMDB

RGD ID:

6879942

Promoter ID:

EPDNEW_M3407

Type:

initiation region

Name:

Rbm38_1

Description:

Mus musculus RNA binding motif protein 38 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	173,021,929 - 173,021,989	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1889294	AgrOrtholog
Ensembl Genes	ENSMUSG00000027510	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000029014	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000133388.2	UniProtKB/TrEMBL
	ENSMUSP00000133464.2	UniProtKB/TrEMBL
	ENSMUSP00000133681.2	UniProtKB/TrEMBL
	ENSMUSP00000133757.2	UniProtKB/TrEMBL
	ENSMUSP00000133816	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000029014	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000155512	ENTREZGENE
	ENSMUST00000173393	UniProtKB/Swiss-Prot
	ENSMUST00000173720.2	UniProtKB/TrEMBL
	ENSMUST00000173878.8	UniProtKB/TrEMBL
	ENSMUST00000173979.2	UniProtKB/TrEMBL
	ENSMUST00000173997.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:56190	UniProtKB/Swiss-Prot
MGD	MGI:1889294	ENTREZGENE
NCBI Gene	56190	ENTREZGENE
Pfam	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rbm38	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8C6I756	ENTREZGENE
	G3UWQ8_MOUSE	UniProtKB/TrEMBL
	G3UWX7_MOUSE	UniProtKB/TrEMBL
	G3UXG4_MOUSE	UniProtKB/TrEMBL
	G3UXN1_MOUSE	UniProtKB/TrEMBL
	Q3TLA1_MOUSE	UniProtKB/TrEMBL
	Q62176	ENTREZGENE
	Q922Z2	ENTREZGENE
	RBM38_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q5U418	UniProtKB/Swiss-Prot
	Q922Z2	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD

Mammalian Phenotype