Sfxn1 (sideroflexin 1) - Rat Genome Database

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Gene: Sfxn1 (sideroflexin 1) Mus musculus
Analyze
Symbol: Sfxn1
Name: sideroflexin 1
RGD ID: 1318277
MGI Page MGI
Description: Predicted to enable L-alanine transmembrane transporter activity and L-serine transmembrane transporter activity. Acts upstream of or within erythrocyte differentiation and iron ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and integumental system. Orthologous to human SFXN1 (sideroflexin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810002O05Rik; A930015P12Rik; f; flexed tail; flexed-tail; sideroflexin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,225,675 - 54,262,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,225,888 - 54,262,361 (+)EnsemblGRCm39 Ensembl
GRCm381354,071,656 - 54,108,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,071,869 - 54,108,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,167,214 - 54,203,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,081,490 - 54,117,966 (+)NCBIMGSCv36mm8
Celera1355,144,580 - 55,182,917 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,2,2-tetramine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (EXP,ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
diethyl maleate  (EXP)
diethylstilbestrol  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glutathione  (ISO)
indole-3-methanol  (ISO)
ivermectin  (ISO)
L-ethionine  (ISO)
lamivudine  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
omeprazole  (ISO)
p-toluidine  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
Propiverine  (ISO)
rifampicin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
streptozocin  (ISO)
sulfadimethoxine  (ISO)
tamoxifen  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (ISO)
zidovudine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
mitochondrial inner membrane  (HDA,IBA,ISO)
mitochondrion  (HDA,IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:390999   PMID:559515   PMID:1194836   PMID:1201223   PMID:1276083   PMID:2077114   PMID:4404581   PMID:4596202   PMID:5367369   PMID:5393940   PMID:5929249   PMID:6062373  
PMID:7690622   PMID:8879267   PMID:8889548   PMID:8962054   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11274051   PMID:12477932   PMID:12865426  
PMID:14610273   PMID:15489334   PMID:15591122   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16897342   PMID:17246696   PMID:18060457   PMID:18374325   PMID:18614015  
PMID:18799693   PMID:19375646   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22001906   PMID:22794259   PMID:23590695   PMID:23604909   PMID:24194600   PMID:24457600   PMID:26287972  
PMID:28378742   PMID:29111324   PMID:30068389   PMID:30196744   PMID:30457570   PMID:30550785   PMID:30562941   PMID:32325033   PMID:33378226   PMID:34321999   PMID:36114006   PMID:36417873  
PMID:38187761  


Genomics

Comparative Map Data
Sfxn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,225,675 - 54,262,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,225,888 - 54,262,361 (+)EnsemblGRCm39 Ensembl
GRCm381354,071,656 - 54,108,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,071,869 - 54,108,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,167,214 - 54,203,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,081,490 - 54,117,966 (+)NCBIMGSCv36mm8
Celera1355,144,580 - 55,182,917 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.4NCBI
SFXN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385175,478,560 - 175,529,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5175,477,062 - 175,529,742 (+)EnsemblGRCh38hg38GRCh38
GRCh375174,905,563 - 174,956,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365174,838,189 - 174,888,218 (+)NCBINCBI36Build 36hg18NCBI36
Build 345174,838,188 - 174,888,218NCBI
Celera5170,944,525 - 170,994,642 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5170,004,689 - 170,054,733 (+)NCBIHuRef
CHM1_15174,337,958 - 174,388,345 (+)NCBICHM1_1
T2T-CHM13v2.05176,022,352 - 176,073,526 (+)NCBIT2T-CHM13v2.0
Sfxn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81710,491,315 - 10,527,793 (-)NCBIGRCr8
mRatBN7.21710,486,250 - 10,522,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1710,486,271 - 10,522,529 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1710,500,879 - 10,536,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01712,035,078 - 12,070,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01710,497,317 - 10,532,759 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01711,046,588 - 11,082,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1711,045,761 - 11,082,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01713,157,817 - 13,193,253 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,601,066 - 16,636,502 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11716,601,065 - 16,636,502 (-)NCBI
Celera1710,555,805 - 10,591,237 (-)NCBICelera
Cytogenetic Map17p14NCBI
Sfxn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,054,211 - 28,106,175 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,054,211 - 28,105,294 (+)NCBIChiLan1.0ChiLan1.0
SFXN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24170,608,863 - 170,660,457 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15168,748,446 - 168,798,866 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05170,825,507 - 170,876,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15177,726,518 - 177,776,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5177,738,961 - 177,775,212 (+)Ensemblpanpan1.1panPan2
SFXN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1437,485,360 - 37,517,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl437,487,438 - 37,512,289 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha437,431,872 - 37,472,432 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,851,035 - 37,891,568 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,851,044 - 37,891,597 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1437,675,678 - 37,716,181 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,863,646 - 37,904,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0438,373,604 - 38,414,131 (-)NCBIUU_Cfam_GSD_1.0
Sfxn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936609729,589 - 754,774 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFXN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,025,820 - 82,057,564 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1282,025,799 - 82,057,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,647,666 - 83,679,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SFXN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12377,625,740 - 77,675,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2377,625,775 - 77,674,907 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666034912,795 - 964,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sfxn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473314,403,957 - 14,452,280 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473314,404,646 - 14,451,943 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sfxn1
1282 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:584
Count of miRNA genes:396
Interacting mature miRNAs:459
Transcripts:ENSMUST00000021930
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
25671382Hrsq4_mhost response to SARS QTL 4, vascular cuffing (mouse)135288165154992738Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_027324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF325260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000021930   ⟹   ENSMUSP00000021930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1354,225,888 - 54,262,361 (+)Ensembl
GRCm38.p6 Ensembl1354,071,869 - 54,108,342 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1354,246,730 - 54,250,243 (+)Ensembl
GRCm38.p6 Ensembl1354,092,711 - 54,096,224 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1354,239,965 - 54,243,893 (+)Ensembl
GRCm38.p6 Ensembl1354,085,946 - 54,089,874 (+)Ensembl
RefSeq Acc Id: NM_027324   ⟹   NP_081600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,864 - 54,262,365 (+)NCBI
GRCm381354,071,845 - 54,108,346 (+)NCBI
MGSCv371354,167,214 - 54,203,715 (+)RGD
Celera1355,144,580 - 55,182,917 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516849   ⟹   XP_006516912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,829 - 54,262,365 (+)NCBI
GRCm381354,071,820 - 54,108,346 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516850   ⟹   XP_006516913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,910 - 54,262,365 (+)NCBI
GRCm381354,071,891 - 54,108,321 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950424
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,834 - 54,262,365 (+)NCBI
GRCm381354,071,826 - 54,108,346 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950425
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,675 - 54,262,365 (+)NCBI
GRCm381354,071,656 - 54,108,346 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937936
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,834 - 54,262,365 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937937
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,675 - 54,262,365 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937938
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,913 - 54,262,365 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937939
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391354,225,913 - 54,262,365 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081600   ⟸   NM_027324
- UniProtKB: Q3UB44 (UniProtKB/Swiss-Prot),   Q9CZG4 (UniProtKB/Swiss-Prot),   Q99JR1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516912   ⟸   XM_006516849
- Peptide Label: isoform X1
- UniProtKB: Q3UB44 (UniProtKB/Swiss-Prot),   Q9CZG4 (UniProtKB/Swiss-Prot),   Q99JR1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516913   ⟸   XM_006516850
- Peptide Label: isoform X1
- UniProtKB: Q3UB44 (UniProtKB/Swiss-Prot),   Q9CZG4 (UniProtKB/Swiss-Prot),   Q99JR1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000021930   ⟸   ENSMUST00000021930

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99JR1-F1-model_v2 AlphaFold Q99JR1 1-322 view protein structure

Promoters
RGD ID:8680374
Promoter ID:EPDNEW_M18218
Type:initiation region
Name:Sfxn1_1
Description:Mus musculus sideroflexin 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381354,071,869 - 54,071,929EPDNEW
RGD ID:6824378
Promoter ID:MM_KWN:14172
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_027324,   NM_027324_SFXN1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361354,167,184 - 54,167,684 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137677 AgrOrtholog
Ensembl Genes ENSMUSG00000021474 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021930 ENTREZGENE
  ENSMUST00000021930.10 UniProtKB/Swiss-Prot
InterPro Mtc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14057 UniProtKB/Swiss-Prot
MGD MGI:2137677 ENTREZGENE
NCBI Gene 14057 ENTREZGENE
PANTHER PTHR11153 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SIDEROFLEXIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mtc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sfxn1 PhenoGen
UniProt Q3UB44 ENTREZGENE
  Q8BPC9_MOUSE UniProtKB/TrEMBL
  Q99JR1 ENTREZGENE
  Q9CZG4 ENTREZGENE
  SFXN1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UB44 UniProtKB/Swiss-Prot
  Q9CZG4 UniProtKB/Swiss-Prot