Polm (polymerase (DNA directed), mu) - Rat Genome Database

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Gene: Polm (polymerase (DNA directed), mu) Mus musculus
Analyze
Symbol: Polm
Name: polymerase (DNA directed), mu
RGD ID: 1317913
MGI Page MGI
Description: Predicted to enable DNA-directed DNA polymerase activity. Acts upstream of or within B cell differentiation and somatic hypermutation of immunoglobulin genes. Predicted to be active in nucleus. Is expressed in muscle tissue and retina. Orthologous to human POLM (DNA polymerase mu).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI462166; B230309I03Rik; DNA polymerase mu; DNA-directed DNA polymerase mu; DNA-directed DNA/RNA polymerase mu; pol Mu; Tdt-; Tdt-N; terminal transferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,777,860 - 5,788,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,777,860 - 5,788,016 (-)EnsemblGRCm39 Ensembl
GRCm38115,827,860 - 5,838,832 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,827,860 - 5,838,016 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,727,863 - 5,738,019 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,727,863 - 5,737,763 (-)NCBIMGSCv36mm8
Celera116,319,454 - 6,329,603 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Lieber MR Annu Rev Biochem. 2010;79:181-211. doi: 10.1146/annurev.biochem.052308.093131.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10747040   PMID:10982892   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11937519   PMID:12477932   PMID:12932354   PMID:15782199   PMID:15789338   PMID:16061182  
PMID:16141072   PMID:16141073   PMID:16860755   PMID:17159995   PMID:19103746   PMID:19229323   PMID:19805281   PMID:20947452   PMID:21081096   PMID:21677750   PMID:21873635   PMID:22071146  
PMID:23301049   PMID:24691161   PMID:25871848   PMID:26240371   PMID:27172884   PMID:28460268   PMID:31138645   PMID:31811168  


Genomics

Comparative Map Data
Polm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,777,860 - 5,788,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,777,860 - 5,788,016 (-)EnsemblGRCm39 Ensembl
GRCm38115,827,860 - 5,838,832 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,827,860 - 5,838,016 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,727,863 - 5,738,019 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,727,863 - 5,737,763 (-)NCBIMGSCv36mm8
Celera116,319,454 - 6,329,603 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
POLM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,072,062 - 44,082,530 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,072,062 - 44,082,530 (-)EnsemblGRCh38hg38GRCh38
GRCh37744,111,661 - 44,122,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,078,371 - 44,088,607 (-)NCBINCBI36Build 36hg18NCBI36
Build 34743,885,085 - 43,895,322NCBI
Celera744,209,796 - 44,220,079 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef743,997,135 - 44,007,419 (-)NCBIHuRef
CHM1_1744,115,725 - 44,126,007 (-)NCBICHM1_1
T2T-CHM13v2.0744,230,561 - 44,241,032 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,151,339 - 44,161,618 (-)NCBI
Polm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,921,039 - 84,930,649 (-)NCBIGRCr8
mRatBN7.21480,707,075 - 80,716,677 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,706,345 - 80,717,086 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,109,494 - 85,119,056 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,349,591 - 86,359,153 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,798,913 - 82,808,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,069,378 - 86,079,327 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,069,016 - 86,078,954 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,761,187 - 86,771,152 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,491,716 - 86,501,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11486,510,861 - 86,520,439 (-)NCBI
Celera1479,591,849 - 79,601,427 (-)NCBICelera
Cytogenetic Map14q21NCBI
Polm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,886,291 - 7,895,085 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,886,182 - 7,893,800 (+)NCBIChiLan1.0ChiLan1.0
POLM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2648,983,399 - 48,993,783 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1797,306,089 - 97,318,530 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0744,785,797 - 44,796,624 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1744,852,594 - 44,862,816 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl744,852,594 - 44,862,816 (-)Ensemblpanpan1.1panPan2
POLM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,018,930 - 2,026,262 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,835,737 - 14,843,073 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,835,697 - 14,845,960 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01614,466,925 - 14,474,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,447,398 - 14,454,737 (+)NCBIUU_Cfam_GSD_1.0
Polm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511899,821,348 - 99,830,709 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,032,920 - 19,042,432 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,032,995 - 19,042,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1851,079,503 - 51,088,781 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11851,077,845 - 51,091,354 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,971,589 - 55,982,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,585,912 - 14,596,127 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2114,586,164 - 14,599,248 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660627,918,848 - 7,928,889 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,932,064 - 7,938,365 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,932,179 - 7,939,133 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Polm
383 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1838
Count of miRNA genes:603
Interacting mature miRNAs:724
Transcripts:ENSMUST00000020767, ENSMUST00000109837, ENSMUST00000124564, ENSMUST00000143478, ENSMUST00000153987, ENSMUST00000156913
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse

Markers in Region
BB314690  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38115,838,507 - 5,838,627UniSTSGRCm38
MGSCv37115,738,510 - 5,738,630UniSTSGRCm37
Celera116,330,094 - 6,330,215UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH4982.01UniSTS
AI462166  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38115,828,055 - 5,828,151UniSTSGRCm38
MGSCv37115,728,058 - 5,728,154UniSTSGRCm37
Celera116,319,649 - 6,319,745UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1126.59UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF176098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ251804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ312903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ130894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020767   ⟹   ENSMUSP00000020767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,777,861 - 5,788,016 (-)Ensembl
GRCm38.p6 Ensembl115,827,861 - 5,838,016 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109837   ⟹   ENSMUSP00000105463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,777,860 - 5,787,789 (-)Ensembl
GRCm38.p6 Ensembl115,827,860 - 5,837,789 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,786,278 - 5,787,752 (-)Ensembl
GRCm38.p6 Ensembl115,836,278 - 5,837,752 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,779,215 - 5,780,200 (-)Ensembl
GRCm38.p6 Ensembl115,829,215 - 5,830,200 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,786,301 - 5,787,793 (-)Ensembl
GRCm38.p6 Ensembl115,836,301 - 5,837,793 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,784,800 - 5,786,485 (-)Ensembl
GRCm38.p6 Ensembl115,834,800 - 5,836,485 (-)Ensembl
RefSeq Acc Id: NM_017401   ⟹   NP_059097
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,777,860 - 5,788,016 (-)NCBI
GRCm38115,827,860 - 5,838,016 (-)NCBI
MGSCv37115,727,863 - 5,738,019 (-)RGD
Celera116,319,454 - 6,329,603 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514758   ⟹   XP_006514821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,777,860 - 5,788,008 (-)NCBI
GRCm38115,827,860 - 5,838,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514759   ⟹   XP_006514822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,780,074 - 5,788,831 (-)NCBI
GRCm38115,830,074 - 5,838,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246158   ⟹   XP_030102018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,777,860 - 5,787,815 (-)NCBI
GRCm38115,827,860 - 5,837,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156851   ⟹   XP_036012744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,777,860 - 5,787,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156852   ⟹   XP_036012745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,777,860 - 5,788,568 (-)NCBI
Sequence:
RefSeq Acc Id: NP_059097   ⟸   NM_017401
- UniProtKB: G5E840 (UniProtKB/Swiss-Prot),   Q9JJW9 (UniProtKB/Swiss-Prot),   Q9JIW4 (UniProtKB/Swiss-Prot),   Q7TN90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514821   ⟸   XM_006514758
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514822   ⟸   XM_006514759
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030102018   ⟸   XM_030246158
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000020767   ⟸   ENSMUST00000020767
RefSeq Acc Id: ENSMUSP00000105463   ⟸   ENSMUST00000109837
RefSeq Acc Id: XP_036012745   ⟸   XM_036156852
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036012744   ⟸   XM_036156851
- Peptide Label: isoform X1
- UniProtKB: Q7TN90 (UniProtKB/TrEMBL)
Protein Domains
BRCT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIW4-F1-model_v2 AlphaFold Q9JIW4 1-496 view protein structure

Promoters
RGD ID:6821587
Promoter ID:MM_KWN:6318
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:OTTMUST00000011410
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36115,736,156 - 5,736,656 (-)MPROMDB
RGD ID:6821585
Promoter ID:MM_KWN:6319
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000109837,   OTTMUST00000011407,   OTTMUST00000011411,   UC007HXF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36115,737,609 - 5,738,109 (-)MPROMDB
RGD ID:8673864
Promoter ID:EPDNEW_M14962
Type:multiple initiation site
Name:Polm_1
Description:Mus musculus polymerase , mu , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38115,838,004 - 5,838,064EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860191 AgrOrtholog
Ensembl Genes ENSMUSG00000020474 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020767 ENTREZGENE
  ENSMUST00000020767.4 UniProtKB/Swiss-Prot
  ENSMUST00000109837.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.210.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  5' to 3' exonuclease, C-terminal subdomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA-dir_DNA_pol_X UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA/RNApol_mu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol-X_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_b-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_B_palm_palm UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_lambd_fingers_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_lamdba_lyase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_Pol_thumb_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_X UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PolB_thumb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TdT/Mu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54125 UniProtKB/Swiss-Prot
MGD MGI:1860191 ENTREZGENE
NCBI Gene 54125 ENTREZGENE
PANTHER DNA-DIRECTED DNA/RNA POLYMERASE MU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11276 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DNA_pol_B_palm UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_B_thumb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_lambd_f UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HHH_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Polm PhenoGen
PIRSF DNA_NT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNApol_mu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS DNAPOLX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAPOLXTDT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_POLYMERASE_X UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART POLXc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PsbU/PolX domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47802 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81301 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt DPOLM_MOUSE UniProtKB/Swiss-Prot
  G5E840 ENTREZGENE
  Q5NCI3_MOUSE UniProtKB/TrEMBL
  Q7TN90 ENTREZGENE, UniProtKB/TrEMBL
  Q9JIW4 ENTREZGENE
  Q9JJW9 ENTREZGENE
UniProt Secondary G5E840 UniProtKB/Swiss-Prot
  Q9JJW9 UniProtKB/Swiss-Prot