Rnf213 (ring finger protein 213) - Rat Genome Database

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Gene: Rnf213 (ring finger protein 213) Mus musculus
Analyze
Symbol: Rnf213
Name: ring finger protein 213
RGD ID: 1317788
MGI Page MGI
Description: Predicted to enable ATP hydrolysis activity and ubiquitin protein ligase activity. Involved in angiogenesis; defense response to bacterium; and lipid ubiquitination. Predicted to be located in cytoplasm and lipid droplet. Predicted to be active in cytosol and nucleolus. Is expressed in genitourinary system; gut; heart; and pericardial component. Human ortholog(s) of this gene implicated in Moyamoya disease. Orthologous to human RNF213 (ring finger protein 213).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6030403J01; D11Ertd759; D11Ertd759e; E3 ubiquitin-lipopolysaccharide ligase RNF213; E3 ubiquitin-protein ligase RNF213; KIAA1554; mKIAA1554; mysterin; protein ALO17; RING-type E3 ubiquitin transferase RNF213
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,280,778 - 119,378,245 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,283,926 - 119,378,244 (+)EnsemblGRCm39 Ensembl
GRCm3811119,389,950 - 119,487,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,393,100 - 119,487,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,254,414 - 119,348,739 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,342,115 - 119,348,729 (+)NCBIMGSCv36mm8
Celera11131,141,037 - 131,235,450 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
7,12-dimethyltetraphene  (EXP)
aconitine  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
dextran sulfate  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
fenthion  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gentamycin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
potassium chromate  (ISO)
potassium dichromate  (EXP)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,ISO)
lipid droplet  (ISO)
nucleolus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10547268   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15368895   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635   PMID:23410753   PMID:24440776   PMID:25383461   PMID:25446450   PMID:26126547   PMID:26315378   PMID:26556774  
PMID:26972532   PMID:27323329   PMID:28190767   PMID:28378742   PMID:29483617   PMID:29718794   PMID:29859889   PMID:30550785   PMID:30696811   PMID:31999304   PMID:32342250   PMID:32554809  
PMID:32573437   PMID:33230847   PMID:33420513   PMID:33973242   PMID:34012115   PMID:35413541   PMID:36114006   PMID:37399508   PMID:37438553   PMID:37778692  


Genomics

Comparative Map Data
Rnf213
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,280,778 - 119,378,245 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,283,926 - 119,378,244 (+)EnsemblGRCm39 Ensembl
GRCm3811119,389,950 - 119,487,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,393,100 - 119,487,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,254,414 - 119,348,739 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,342,115 - 119,348,729 (+)NCBIMGSCv36mm8
Celera11131,141,037 - 131,235,450 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.48NCBI
RNF213
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381780,260,852 - 80,398,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1780,260,852 - 80,398,794 (+)EnsemblGRCh38hg38GRCh38
GRCh371778,234,651 - 78,372,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361775,928,321 - 75,984,681 (+)NCBINCBI36Build 36hg18NCBI36
Celera1774,864,699 - 74,998,227 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1773,676,973 - 73,810,563 (+)NCBIHuRef
CHM1_11778,320,628 - 78,458,825 (+)NCBICHM1_1
T2T-CHM13v2.01781,161,115 - 81,300,623 (+)NCBIT2T-CHM13v2.0
Rnf213
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,154,873 - 105,254,148 (+)NCBIGRCr8
mRatBN7.210104,656,329 - 104,755,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,656,883 - 104,757,918 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010108,527,351 - 108,626,372 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,527,740 - 108,624,688 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010108,134,305 - 108,230,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,765,490 - 108,862,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110108,778,807 - 108,875,755 (+)NCBI
Celera10103,204,438 - 103,300,991 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Rnf213
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555062,499,770 - 2,596,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555062,498,339 - 2,598,363 (-)NCBIChiLan1.0ChiLan1.0
RNF213
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21996,840,037 - 96,976,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117101,739,813 - 101,874,913 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01774,688,130 - 74,823,973 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11780,421,373 - 80,556,570 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1780,421,373 - 80,556,570 (+)Ensemblpanpan1.1panPan2
RNF213
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,439,061 - 1,506,658 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,440,364 - 1,506,951 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,056,478 - 2,154,125 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.092,048,400 - 2,146,573 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl92,047,972 - 2,145,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.192,071,964 - 2,170,024 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.092,197,505 - 2,295,458 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.092,278,468 - 2,376,800 (-)NCBIUU_Cfam_GSD_1.0
Rnf213
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056022,082,963 - 2,171,115 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365944,241,396 - 4,331,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365944,241,006 - 4,331,841 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF213
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11672,241,519 - 72,370,710 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1672,244,245 - 72,369,859 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607743,548,858 - 43,678,882 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf213
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248019,472,891 - 9,574,511 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf213
3505 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1384
Count of miRNA genes:337
Interacting mature miRNAs:392
Transcripts:ENSMUST00000093902, ENSMUST00000131035, ENSMUST00000172235
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse

Markers in Region
RH128310  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811119,486,642 - 119,486,846UniSTSGRCm38
MGSCv3711119,347,956 - 119,348,160UniSTSGRCm37
Celera11131,234,667 - 131,234,871UniSTS
Cytogenetic Map11E2UniSTS
cM Map1175.0UniSTS
D11Ertd759e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811119,487,192 - 119,487,402UniSTSGRCm38
MGSCv3711119,348,506 - 119,348,716UniSTSGRCm37
Celera11131,235,217 - 131,235,427UniSTS
Cytogenetic Map11E2UniSTS
cM Map1175.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001040005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK037444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU019778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV319021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U76754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U76755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000093902   ⟹   ENSMUSP00000091429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,283,926 - 119,378,241 (+)Ensembl
GRCm38.p6 Ensembl11119,393,100 - 119,487,415 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131035   ⟹   ENSMUSP00000115063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,283,926 - 119,378,244 (+)Ensembl
GRCm38.p6 Ensembl11119,393,100 - 119,487,418 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172235   ⟹   ENSMUSP00000130027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,368,883 - 119,378,243 (+)Ensembl
GRCm38.p6 Ensembl11119,478,057 - 119,487,417 (+)Ensembl
RefSeq Acc Id: NM_001040005   ⟹   NP_001035094
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,280,925 - 119,378,244 (+)NCBI
GRCm3811119,390,099 - 119,487,418 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534630   ⟹   XP_006534693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,280,782 - 119,378,245 (+)NCBI
GRCm3811119,389,954 - 119,487,418 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534631   ⟹   XP_006534694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,280,782 - 119,378,245 (+)NCBI
GRCm3811119,389,954 - 119,487,418 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534632   ⟹   XP_006534695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,280,782 - 119,378,245 (+)NCBI
GRCm3811119,389,954 - 119,487,418 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534633   ⟹   XP_006534696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,280,778 - 119,359,830 (+)NCBI
GRCm3811119,389,950 - 119,468,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246242   ⟹   XP_030102102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,281,189 - 119,378,245 (+)NCBI
GRCm3811119,390,367 - 119,487,418 (+)NCBI
Sequence:
RefSeq Acc Id: XP_006534696   ⟸   XM_006534633
- Peptide Label: isoform X4
- UniProtKB: A0A8I4P9C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534693   ⟸   XM_006534630
- Peptide Label: isoform X1
- UniProtKB: A0A8I4P9C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534694   ⟸   XM_006534631
- Peptide Label: isoform X2
- UniProtKB: A0A8I4P9C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534695   ⟸   XM_006534632
- Peptide Label: isoform X3
- UniProtKB: A0A8I4P9C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001035094   ⟸   NM_001040005
- UniProtKB: F7A6H4 (UniProtKB/Swiss-Prot),   E9Q555 (UniProtKB/Swiss-Prot),   Q8BVK6 (UniProtKB/Swiss-Prot),   A0A8I4P9C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030102102   ⟸   XM_030246242
- Peptide Label: isoform X1
- UniProtKB: A0A8I4P9C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000130027   ⟸   ENSMUST00000172235
RefSeq Acc Id: ENSMUSP00000091429   ⟸   ENSMUST00000093902
RefSeq Acc Id: ENSMUSP00000115063   ⟸   ENSMUST00000131035
Protein Domains
RING-type   RZ-type

Promoters
RGD ID:6821749
Promoter ID:MM_KWN:10848
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:UC007MQS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611119,341,181 - 119,342,542 (+)MPROMDB
RGD ID:8677608
Promoter ID:EPDNEW_M16833
Type:multiple initiation site
Name:Rnf213_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811119,426,016 - 119,426,076EPDNEW
RGD ID:8677606
Promoter ID:EPDNEW_M16834
Type:initiation region
Name:AK217856_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811119,469,061 - 119,469,121EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289196 AgrOrtholog
Ensembl Genes ENSMUSG00000070327 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000093902 ENTREZGENE
  ENSMUST00000093902.12 UniProtKB/TrEMBL
  ENSMUST00000131035.10 UniProtKB/TrEMBL
  ENSMUST00000172235.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNF213 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1289196 ENTREZGENE
NCBI Gene 672511 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF213 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22605 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF6539 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf213 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A171EBL2_MOUSE UniProtKB/TrEMBL
  A0A8I4P9C4 ENTREZGENE, UniProtKB/TrEMBL
  E9Q555 ENTREZGENE
  F7A6H4 ENTREZGENE
  O55132_MOUSE UniProtKB/TrEMBL
  Q0VEC6_MOUSE UniProtKB/TrEMBL
  Q3U0U2_MOUSE UniProtKB/TrEMBL
  Q3UD49_MOUSE UniProtKB/TrEMBL
  Q8BVK6 ENTREZGENE
  Q8CAX5_MOUSE UniProtKB/TrEMBL
  Q8CI06_MOUSE UniProtKB/TrEMBL
  RN213_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary F7A6H4 UniProtKB/Swiss-Prot
  Q8BVK6 UniProtKB/Swiss-Prot